* installing *source* package ‘multinet’ ...
** this is package ‘multinet’ version ‘4.3.2’
** package ‘multinet’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 21.1.8’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/multinet/src'
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c init.cpp -o init.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c r_functions.cpp -o r_functions.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c rcpp_module_definition.cpp -o rcpp_module_definition.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c rcpp_utils.cpp -o rcpp_utils.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/community/_impl/common.cpp -o src/community/_impl/common.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/community/_impl/glouvain2_utils.cpp -o src/community/_impl/glouvain2_utils.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/community/_impl/MetaNetwork.cpp -o src/community/_impl/MetaNetwork.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/community/_impl/GMetaNetwork.cpp -o src/community/_impl/GMetaNetwork.o
In file included from r_functions.cpp:9:
In file included from src/community/infomap.hpp:18:
In file included from infomap/infomap/InfomapContext.h:31:
In file included from infomap/infomap/InfomapBase.h:33:
infomap/infomap/../utils/MersenneTwister.h:333:17: warning: arithmetic between different enumeration types ('MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:60:5)' and 'MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:64:5)') is deprecated [-Wdeprecated-anon-enum-enum-conversion]
  333 |     for ( i = N - M; i--; ++p )
      |               ~ ^ ~
infomap/infomap/../utils/MersenneTwister.h:340:24: warning: arithmetic between different enumeration types ('MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:64:5)' and 'MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:60:5)') is deprecated [-Wdeprecated-anon-enum-enum-conversion]
  340 |         *p = twist( p[M-N], p[0], p[1] );
      |                       ~^~
infomap/infomap/../utils/MersenneTwister.h:343:20: warning: arithmetic between different enumeration types ('MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:64:5)' and 'MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:60:5)') is deprecated [-Wdeprecated-anon-enum-enum-conversion]
  343 |     *p = twist( p[M-N], p[0], state[0] );
      |                   ~^~
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/community/_impl/louvain_utils.cpp -o src/community/_impl/louvain_utils.o
In file included from r_functions.cpp:1:
In file included from /usr/local/clang21/bin/../include/c++/v1/sstream:327:
In file included from /usr/local/clang21/bin/../include/c++/v1/istream:1411:
In file included from /usr/local/clang21/bin/../include/c++/v1/ostream:201:
In file included from /usr/local/clang21/bin/../include/c++/v1/format:251:
In file included from /usr/local/clang21/bin/../include/c++/v1/queue:276:
In file included from /usr/local/clang21/bin/../include/c++/v1/deque:2656:
In file included from /usr/local/clang21/bin/../include/c++/v1/functional:601:
In file included from /usr/local/clang21/bin/../include/c++/v1/vector:314:
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:388:48: error: arithmetic on a pointer to an incomplete type 'infomap::PerIterationStats'
  388 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                   ~~~~~~~~~~~~ ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:542:28: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::size' requested here
  542 |     size_type __old_size = size();
      |                            ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:251:16: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::clear' requested here
  251 |         __vec_.clear();
      |                ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
In file included from r_functions.cpp:1:
In file included from /usr/local/clang21/bin/../include/c++/v1/sstream:327:
In file included from /usr/local/clang21/bin/../include/c++/v1/istream:1411:
In file included from /usr/local/clang21/bin/../include/c++/v1/ostream:201:
In file included from /usr/local/clang21/bin/../include/c++/v1/format:251:
In file included from /usr/local/clang21/bin/../include/c++/v1/queue:276:
In file included from /usr/local/clang21/bin/../include/c++/v1/deque:2656:
In file included from /usr/local/clang21/bin/../include/c++/v1/functional:601:
In file included from /usr/local/clang21/bin/../include/c++/v1/vector:314:
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:763:65: error: arithmetic on a pointer to an incomplete type 'infomap::PerIterationStats'
  763 |       __alloc_traits::destroy(this->__alloc_, std::__to_address(--__soon_to_be_end));
      |                                                                 ^ ~~~~~~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:543:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__base_destruct_at_end' requested here
  543 |     __base_destruct_at_end(this->__begin_);
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:251:16: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::clear' requested here
  251 |         __vec_.clear();
      |                ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
In file included from r_functions.cpp:1:
In file included from /usr/local/clang21/bin/../include/c++/v1/sstream:327:
In file included from /usr/local/clang21/bin/../include/c++/v1/istream:1411:
In file included from /usr/local/clang21/bin/../include/c++/v1/ostream:201:
In file included from /usr/local/clang21/bin/../include/c++/v1/format:251:
In file included from /usr/local/clang21/bin/../include/c++/v1/queue:276:
In file included from /usr/local/clang21/bin/../include/c++/v1/deque:2656:
In file included from /usr/local/clang21/bin/../include/c++/v1/functional:601:
In file included from /usr/local/clang21/bin/../include/c++/v1/vector:314:
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:391:48: error: arithmetic on a pointer to an incomplete type 'infomap::PerIterationStats'
  391 |     return static_cast<size_type>(this->__cap_ - this->__begin_);
      |                                   ~~~~~~~~~~~~ ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:720:71: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::capacity' requested here
  720 |     std::__annotate_contiguous_container<_Allocator>(data(), data() + capacity(), __old_mid, __new_mid);
      |                                                                       ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:736:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__annotate_contiguous_container' requested here
  736 |     __annotate_contiguous_container(data() + __old_size, data() + size());
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:544:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__annotate_shrink' requested here
  544 |     __annotate_shrink(__old_size);
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:251:16: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::clear' requested here
  251 |         __vec_.clear();
      |                ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
In file included from r_functions.cpp:1:
In file included from /usr/local/clang21/bin/../include/c++/v1/sstream:327:
In file included from /usr/local/clang21/bin/../include/c++/v1/istream:1411:
In file included from /usr/local/clang21/bin/../include/c++/v1/ostream:201:
In file included from /usr/local/clang21/bin/../include/c++/v1/format:251:
In file included from /usr/local/clang21/bin/../include/c++/v1/queue:276:
In file included from /usr/local/clang21/bin/../include/c++/v1/deque:2656:
In file included from /usr/local/clang21/bin/../include/c++/v1/functional:601:
In file included from /usr/local/clang21/bin/../include/c++/v1/vector:314:
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:720:69: error: arithmetic on a pointer to an incomplete type 'const value_type' (aka 'const infomap::PerIterationStats')
  720 |     std::__annotate_contiguous_container<_Allocator>(data(), data() + capacity(), __old_mid, __new_mid);
      |                                                              ~~~~~~ ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:736:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__annotate_contiguous_container' requested here
  736 |     __annotate_contiguous_container(data() + __old_size, data() + size());
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:544:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__annotate_shrink' requested here
  544 |     __annotate_shrink(__old_size);
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:251:16: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::clear' requested here
  251 |         __vec_.clear();
      |                ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
In file included from r_functions.cpp:1:
In file included from /usr/local/clang21/bin/../include/c++/v1/sstream:327:
In file included from /usr/local/clang21/bin/../include/c++/v1/istream:1411:
In file included from /usr/local/clang21/bin/../include/c++/v1/ostream:201:
In file included from /usr/local/clang21/bin/../include/c++/v1/format:251:
In file included from /usr/local/clang21/bin/../include/c++/v1/queue:276:
In file included from /usr/local/clang21/bin/../include/c++/v1/deque:2656:
In file included from /usr/local/clang21/bin/../include/c++/v1/functional:601:
In file included from /usr/local/clang21/bin/../include/c++/v1/vector:314:
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:736:44: error: arithmetic on a pointer to an incomplete type 'const value_type' (aka 'const infomap::PerIterationStats')
  736 |     __annotate_contiguous_container(data() + __old_size, data() + size());
      |                                     ~~~~~~ ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:544:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__annotate_shrink' requested here
  544 |     __annotate_shrink(__old_size);
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:251:16: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::clear' requested here
  251 |         __vec_.clear();
      |                ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
In file included from r_functions.cpp:1:
In file included from /usr/local/clang21/bin/../include/c++/v1/sstream:323:
In file included from /usr/local/clang21/bin/../include/c++/v1/__ostream/basic_ostream.h:19:
In file included from /usr/local/clang21/bin/../include/c++/v1/__locale_dir/num.h:19:
In file included from /usr/local/clang21/bin/../include/c++/v1/__locale_dir/check_grouping.h:14:
In file included from /usr/local/clang21/bin/../include/c++/v1/ios:228:
In file included from /usr/local/clang21/bin/../include/c++/v1/__locale:20:
In file included from /usr/local/clang21/bin/../include/c++/v1/__mutex/once_flag.h:22:
In file included from /usr/local/clang21/bin/../include/c++/v1/tuple:1438:
In file included from /usr/local/clang21/bin/../include/c++/v1/exception:97:
In file included from /usr/local/clang21/bin/../include/c++/v1/new:94:
/usr/local/clang21/bin/../include/c++/v1/__new/allocate.h:56:59: error: invalid application of 'alignof' to an incomplete type 'infomap::PerIterationStats'
   56 |                     [[__maybe_unused__]] size_t __align = _LIBCPP_ALIGNOF(_Tp)) _NOEXCEPT {
      |                                                           ^~~~~~~~~~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__config:351:34: note: expanded from macro '_LIBCPP_ALIGNOF'
  351 | #    define _LIBCPP_ALIGNOF(_Tp) alignof(_Tp)
      |                                  ^~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__memory/allocator.h:120:7: note: in instantiation of default function argument expression for '__libcpp_deallocate<infomap::PerIterationStats>' required here
  120 |       std::__libcpp_deallocate<_Tp>(__p, __element_count(__n));
      |       ^
/usr/local/clang21/bin/../include/c++/v1/__memory/allocator_traits.h:289:9: note: in instantiation of member function 'std::allocator<infomap::PerIterationStats>::deallocate' requested here
  289 |     __a.deallocate(__p, __n);
      |         ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:253:25: note: in instantiation of member function 'std::allocator_traits<std::allocator<infomap::PerIterationStats>>::deallocate' requested here
  253 |         __alloc_traits::deallocate(__vec_.__alloc_, __vec_.__begin_, __vec_.capacity());
      |                         ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/community/optimize_slices.cpp -o src/community/optimize_slices.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/arules/generate_subsets.cpp -o src/core/arules/generate_subsets.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/arules/bottom_up_search.cpp -o src/core/arules/bottom_up_search.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/arules/join_itemsets.cpp -o src/core/arules/join_itemsets.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/arules/read_transactions.cpp -o src/core/arules/read_transactions.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/arules/join_items.cpp -o src/core/arules/join_items.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/arules/eclat.cpp -o src/core/arules/eclat.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/arules/freq_itemset.cpp -o src/core/arules/freq_itemset.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/arules/intersect_tids.cpp -o src/core/arules/intersect_tids.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/objects/Object.cpp -o src/core/objects/Object.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/utils/random.cpp -o src/core/utils/random.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/utils/NameIterator.cpp -o src/core/utils/NameIterator.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/utils/string.cpp -o src/core/utils/string.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/utils/CSVReader.cpp -o src/core/utils/CSVReader.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/utils/vector.cpp -o src/core/utils/vector.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/exceptions/NullPtrException.cpp -o src/core/exceptions/NullPtrException.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/exceptions/FileNotFoundException.cpp -o src/core/exceptions/FileNotFoundException.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/exceptions/assert_not_null.cpp -o src/core/exceptions/assert_not_null.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/exceptions/DuplicateElementException.cpp -o src/core/exceptions/DuplicateElementException.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/exceptions/ExternalLibException.cpp -o src/core/exceptions/ExternalLibException.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/exceptions/ElementNotFoundException.cpp -o src/core/exceptions/ElementNotFoundException.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/exceptions/OutOfBoundsException.cpp -o src/core/exceptions/OutOfBoundsException.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/exceptions/OperationNotSupportedException.cpp -o src/core/exceptions/OperationNotSupportedException.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/exceptions/WrongParameterException.cpp -o src/core/exceptions/WrongParameterException.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/exceptions/WrongFormatException.cpp -o src/core/exceptions/WrongFormatException.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/attributes/Text.cpp -o src/core/attributes/Text.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/attributes/Attribute.cpp -o src/core/attributes/Attribute.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/attributes/conversion.cpp -o src/core/attributes/conversion.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/attributes/AttributeType.cpp -o src/core/attributes/AttributeType.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/attributes/Time.cpp -o src/core/attributes/Time.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/core/observers/ObserverStore.cpp -o src/core/observers/ObserverStore.o
In file included from r_functions.cpp:13:
In file included from src/community/modularity.hpp:47:
src/community/modularity.ipp:149:15: warning: unused variable 'actor' [-Wunused-variable]
  149 |     for (auto actor: *mnet->actors())
      |               ^~~~~
r_functions.cpp:3234:21: note: in instantiation of function template specialization 'uu::net::modularity<uu::net::MultilayerNetwork, uu::net::CommunityStructure<uu::net::MultilayerNetwork>>' requested here
 3234 |     return uu::net::modularity(mnet, communities.get(), omega);
      |                     ^
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/generation/communities.cpp -o src/generation/communities.o
4 warnings and 6 errors generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:201: r_functions.o] Error 1
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/generation/erdos_renyi.cpp -o src/generation/erdos_renyi.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/generation/standard_graphs.cpp -o src/generation/standard_graphs.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/io/_impl/parser/mlpass2/parser.cpp -o src/io/_impl/parser/mlpass2/parser.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/io/_impl/parser/mlpass1/utility_functions.cpp -o src/io/_impl/parser/mlpass1/utility_functions.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/io/_impl/parser/mlpass1/parser.cpp -o src/io/_impl/parser/mlpass1/parser.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/io/_impl/read_common.cpp -o src/io/_impl/read_common.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/io/_impl/GraphIOFileSection.cpp -o src/io/_impl/GraphIOFileSection.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/io/read_network.cpp -o src/io/read_network.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/io/write_multilayer_network.cpp -o src/io/write_multilayer_network.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/io/read_probabilistic_network.cpp -o src/io/read_probabilistic_network.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/io/read_weighted_network.cpp -o src/io/read_weighted_network.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/io/read_multilayer_network.cpp -o src/io/read_multilayer_network.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/io/read_temporal_network.cpp -o src/io/read_temporal_network.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/layout/multiforce.cpp -o src/layout/multiforce.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/networks/MultilayerNetwork.cpp -o src/networks/MultilayerNetwork.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/networks/Network.cpp -o src/networks/Network.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/networks/_impl/stores/LayerStore.cpp -o src/networks/_impl/stores/LayerStore.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/networks/_impl/stores/MLECubeStore.cpp -o src/networks/_impl/stores/MLECubeStore.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/networks/_impl/stores/VertexStore.cpp -o src/networks/_impl/stores/VertexStore.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/networks/_impl/stores/SimpleEdgeStore.cpp -o src/networks/_impl/stores/SimpleEdgeStore.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/networks/_impl/stores/MultiEdgeStore.cpp -o src/networks/_impl/stores/MultiEdgeStore.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/networks/_impl/stores/EdgeStore.cpp -o src/networks/_impl/stores/EdgeStore.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/networks/_impl/observers/CheckVerticesExistObserver.cpp -o src/networks/_impl/observers/CheckVerticesExistObserver.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/networks/_impl/observers/NoLoopCheckObserver2.cpp -o src/networks/_impl/observers/NoLoopCheckObserver2.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/networks/OrderedMultiplexNetwork.cpp -o src/networks/OrderedMultiplexNetwork.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/networks/MultiNetwork.cpp -o src/networks/MultiNetwork.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/networks/weight.cpp -o src/networks/weight.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/networks/probability.cpp -o src/networks/probability.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/networks/time.cpp -o src/networks/time.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/objects/Dyad.cpp -o src/objects/Dyad.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/objects/Walk.cpp -o src/objects/Walk.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/objects/Triad.cpp -o src/objects/Triad.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/objects/Path.cpp -o src/objects/Path.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/objects/MLVertex.cpp -o src/objects/MLVertex.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/objects/Trail.cpp -o src/objects/Trail.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/objects/Vertex.cpp -o src/objects/Vertex.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/objects/Edge.cpp -o src/objects/Edge.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/olap/MECube.cpp -o src/olap/MECube.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/olap/indexing.cpp -o src/olap/indexing.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/olap/VCube.cpp -o src/olap/VCube.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/olap/sel/Indexes.cpp -o src/olap/sel/Indexes.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/olap/sel/Range.cpp -o src/olap/sel/Range.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/olap/sel/Set.cpp -o src/olap/sel/Set.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/olap/sel/All.cpp -o src/olap/sel/All.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/olap/sel/IndexIterator.cpp -o src/olap/sel/IndexIterator.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/olap/ECube.cpp -o src/olap/ECube.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/olap/time.cpp -o src/olap/time.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/operations/slice.cpp -o src/operations/slice.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/operations/sample.cpp -o src/operations/sample.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c src/utils/summary.cpp -o src/utils/summary.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c infomap/infomap/Network.cpp -o infomap/infomap/Network.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c infomap/infomap/FlowNetwork.cpp -o infomap/infomap/FlowNetwork.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c infomap/infomap/Node.cpp -o infomap/infomap/Node.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c infomap/infomap/TreeData.cpp -o infomap/infomap/TreeData.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c infomap/infomap/InfomapContext.cpp -o infomap/infomap/InfomapContext.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c infomap/infomap/NetworkAdapter.cpp -o infomap/infomap/NetworkAdapter.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c infomap/infomap/MultiplexNetwork.cpp -o infomap/infomap/MultiplexNetwork.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c infomap/infomap/MemoryNetworkAdapter.cpp -o infomap/infomap/MemoryNetworkAdapter.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c infomap/infomap/MemNetwork.cpp -o infomap/infomap/MemNetwork.o
infomap/infomap/Network.cpp:1259:18: warning: unused variable 'numNodesIgnored' [-Wunused-variable]
 1259 |     unsigned int numNodesIgnored = m_numNodesFound - m_numNodes;
      |                  ^~~~~~~~~~~~~~~
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c infomap/infomap/MemFlowNetwork.cpp -o infomap/infomap/MemFlowNetwork.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c infomap/infomap/InfomapBase.cpp -o infomap/infomap/InfomapBase.o
In file included from infomap/infomap/Node.cpp:31:
In file included from infomap/infomap/InfomapBase.h:33:
infomap/infomap/../utils/MersenneTwister.h:333:17: warning: arithmetic between different enumeration types ('MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:60:5)' and 'MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:64:5)') is deprecated [-Wdeprecated-anon-enum-enum-conversion]
  333 |     for ( i = N - M; i--; ++p )
      |               ~ ^ ~
infomap/infomap/../utils/MersenneTwister.h:340:24: warning: arithmetic between different enumeration types ('MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:64:5)' and 'MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:60:5)') is deprecated [-Wdeprecated-anon-enum-enum-conversion]
  340 |         *p = twist( p[M-N], p[0], p[1] );
      |                       ~^~
infomap/infomap/../utils/MersenneTwister.h:343:20: warning: arithmetic between different enumeration types ('MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:64:5)' and 'MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:60:5)') is deprecated [-Wdeprecated-anon-enum-enum-conversion]
  343 |     *p = twist( p[M-N], p[0], state[0] );
      |                   ~^~
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c infomap/io/HierarchicalNetwork.cpp -o infomap/io/HierarchicalNetwork.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c infomap/io/TreeDataWriter.cpp -o infomap/io/TreeDataWriter.o
In file included from infomap/infomap/InfomapContext.cpp:28:
In file included from infomap/infomap/InfomapContext.h:31:
In file included from infomap/infomap/InfomapBase.h:33:
infomap/infomap/../utils/MersenneTwister.h:333:17: warning: arithmetic between different enumeration types ('MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:60:5)' and 'MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:64:5)') is deprecated [-Wdeprecated-anon-enum-enum-conversion]
  333 |     for ( i = N - M; i--; ++p )
      |               ~ ^ ~
infomap/infomap/../utils/MersenneTwister.h:340:24: warning: arithmetic between different enumeration types ('MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:64:5)' and 'MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:60:5)') is deprecated [-Wdeprecated-anon-enum-enum-conversion]
  340 |         *p = twist( p[M-N], p[0], p[1] );
      |                       ~^~
infomap/infomap/../utils/MersenneTwister.h:343:20: warning: arithmetic between different enumeration types ('MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:64:5)' and 'MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:60:5)') is deprecated [-Wdeprecated-anon-enum-enum-conversion]
  343 |     *p = twist( p[M-N], p[0], state[0] );
      |                   ~^~
In file included from infomap/infomap/Node.cpp:28:
In file included from infomap/infomap/Node.h:30:
In file included from /usr/local/clang21/bin/../include/c++/v1/vector:314:
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:388:48: error: arithmetic on a pointer to an incomplete type 'infomap::PerIterationStats'
  388 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                   ~~~~~~~~~~~~ ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:542:28: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::size' requested here
  542 |     size_type __old_size = size();
      |                            ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:251:16: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::clear' requested here
  251 |         __vec_.clear();
      |                ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
In file included from infomap/infomap/Node.cpp:28:
In file included from infomap/infomap/Node.h:30:
In file included from /usr/local/clang21/bin/../include/c++/v1/vector:314:
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:763:65: error: arithmetic on a pointer to an incomplete type 'infomap::PerIterationStats'
  763 |       __alloc_traits::destroy(this->__alloc_, std::__to_address(--__soon_to_be_end));
      |                                                                 ^ ~~~~~~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:543:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__base_destruct_at_end' requested here
  543 |     __base_destruct_at_end(this->__begin_);
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:251:16: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::clear' requested here
  251 |         __vec_.clear();
      |                ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
In file included from infomap/infomap/Node.cpp:28:
In file included from infomap/infomap/Node.h:30:
In file included from /usr/local/clang21/bin/../include/c++/v1/vector:314:
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:391:48: error: arithmetic on a pointer to an incomplete type 'infomap::PerIterationStats'
  391 |     return static_cast<size_type>(this->__cap_ - this->__begin_);
      |                                   ~~~~~~~~~~~~ ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:720:71: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::capacity' requested here
  720 |     std::__annotate_contiguous_container<_Allocator>(data(), data() + capacity(), __old_mid, __new_mid);
      |                                                                       ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:736:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__annotate_contiguous_container' requested here
  736 |     __annotate_contiguous_container(data() + __old_size, data() + size());
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:544:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__annotate_shrink' requested here
  544 |     __annotate_shrink(__old_size);
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:251:16: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::clear' requested here
  251 |         __vec_.clear();
      |                ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
In file included from infomap/infomap/Node.cpp:28:
In file included from infomap/infomap/Node.h:30:
In file included from /usr/local/clang21/bin/../include/c++/v1/vector:314:
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:720:69: error: arithmetic on a pointer to an incomplete type 'const value_type' (aka 'const infomap::PerIterationStats')
  720 |     std::__annotate_contiguous_container<_Allocator>(data(), data() + capacity(), __old_mid, __new_mid);
      |                                                              ~~~~~~ ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:736:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__annotate_contiguous_container' requested here
  736 |     __annotate_contiguous_container(data() + __old_size, data() + size());
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:544:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__annotate_shrink' requested here
  544 |     __annotate_shrink(__old_size);
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:251:16: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::clear' requested here
  251 |         __vec_.clear();
      |                ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
In file included from infomap/infomap/Node.cpp:28:
In file included from infomap/infomap/Node.h:30:
In file included from /usr/local/clang21/bin/../include/c++/v1/vector:314:
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:736:44: error: arithmetic on a pointer to an incomplete type 'const value_type' (aka 'const infomap::PerIterationStats')
  736 |     __annotate_contiguous_container(data() + __old_size, data() + size());
      |                                     ~~~~~~ ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:544:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__annotate_shrink' requested here
  544 |     __annotate_shrink(__old_size);
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:251:16: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::clear' requested here
  251 |         __vec_.clear();
      |                ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
In file included from infomap/infomap/Node.cpp:28:
In file included from infomap/infomap/Node.h:30:
In file included from /usr/local/clang21/bin/../include/c++/v1/vector:314:
In file included from /usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:37:
In file included from /usr/local/clang21/bin/../include/c++/v1/__memory/allocator.h:19:
/usr/local/clang21/bin/../include/c++/v1/__new/allocate.h:56:59: error: invalid application of 'alignof' to an incomplete type 'infomap::PerIterationStats'
   56 |                     [[__maybe_unused__]] size_t __align = _LIBCPP_ALIGNOF(_Tp)) _NOEXCEPT {
      |                                                           ^~~~~~~~~~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__config:351:34: note: expanded from macro '_LIBCPP_ALIGNOF'
  351 | #    define _LIBCPP_ALIGNOF(_Tp) alignof(_Tp)
      |                                  ^~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__memory/allocator.h:120:7: note: in instantiation of default function argument expression for '__libcpp_deallocate<infomap::PerIterationStats>' required here
  120 |       std::__libcpp_deallocate<_Tp>(__p, __element_count(__n));
      |       ^
/usr/local/clang21/bin/../include/c++/v1/__memory/allocator_traits.h:289:9: note: in instantiation of member function 'std::allocator<infomap::PerIterationStats>::deallocate' requested here
  289 |     __a.deallocate(__p, __n);
      |         ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:253:25: note: in instantiation of member function 'std::allocator_traits<std::allocator<infomap::PerIterationStats>>::deallocate' requested here
  253 |         __alloc_traits::deallocate(__vec_.__alloc_, __vec_.__begin_, __vec_.capacity());
      |                         ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
In file included from infomap/infomap/InfomapContext.cpp:28:
In file included from infomap/infomap/InfomapContext.h:30:
In file included from infomap/infomap/../io/Config.h:31:
In file included from /usr/local/clang21/bin/../include/c++/v1/iomanip:558:
In file included from /usr/local/clang21/bin/../include/c++/v1/deque:2656:
In file included from /usr/local/clang21/bin/../include/c++/v1/functional:601:
In file included from /usr/local/clang21/bin/../include/c++/v1/vector:314:
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:388:48: error: arithmetic on a pointer to an incomplete type 'infomap::PerIterationStats'
  388 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                   ~~~~~~~~~~~~ ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:542:28: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::size' requested here
  542 |     size_type __old_size = size();
      |                            ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:251:16: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::clear' requested here
  251 |         __vec_.clear();
      |                ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
In file included from infomap/infomap/InfomapContext.cpp:28:
In file included from infomap/infomap/InfomapContext.h:30:
In file included from infomap/infomap/../io/Config.h:31:
In file included from /usr/local/clang21/bin/../include/c++/v1/iomanip:558:
In file included from /usr/local/clang21/bin/../include/c++/v1/deque:2656:
In file included from /usr/local/clang21/bin/../include/c++/v1/functional:601:
In file included from /usr/local/clang21/bin/../include/c++/v1/vector:314:
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:763:65: error: arithmetic on a pointer to an incomplete type 'infomap::PerIterationStats'
  763 |       __alloc_traits::destroy(this->__alloc_, std::__to_address(--__soon_to_be_end));
      |                                                                 ^ ~~~~~~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:543:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__base_destruct_at_end' requested here
  543 |     __base_destruct_at_end(this->__begin_);
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:251:16: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::clear' requested here
  251 |         __vec_.clear();
      |                ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
In file included from infomap/infomap/InfomapContext.cpp:28:
In file included from infomap/infomap/InfomapContext.h:30:
In file included from infomap/infomap/../io/Config.h:31:
In file included from /usr/local/clang21/bin/../include/c++/v1/iomanip:558:
In file included from /usr/local/clang21/bin/../include/c++/v1/deque:2656:
In file included from /usr/local/clang21/bin/../include/c++/v1/functional:601:
In file included from /usr/local/clang21/bin/../include/c++/v1/vector:314:
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:391:48: error: arithmetic on a pointer to an incomplete type 'infomap::PerIterationStats'
  391 |     return static_cast<size_type>(this->__cap_ - this->__begin_);
      |                                   ~~~~~~~~~~~~ ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:720:71: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::capacity' requested here
  720 |     std::__annotate_contiguous_container<_Allocator>(data(), data() + capacity(), __old_mid, __new_mid);
      |                                                                       ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:736:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__annotate_contiguous_container' requested here
  736 |     __annotate_contiguous_container(data() + __old_size, data() + size());
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:544:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__annotate_shrink' requested here
  544 |     __annotate_shrink(__old_size);
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:251:16: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::clear' requested here
  251 |         __vec_.clear();
      |                ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
In file included from infomap/infomap/InfomapContext.cpp:28:
In file included from infomap/infomap/InfomapContext.h:30:
In file included from infomap/infomap/../io/Config.h:31:
In file included from /usr/local/clang21/bin/../include/c++/v1/iomanip:558:
In file included from /usr/local/clang21/bin/../include/c++/v1/deque:2656:
In file included from /usr/local/clang21/bin/../include/c++/v1/functional:601:
In file included from /usr/local/clang21/bin/../include/c++/v1/vector:314:
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:720:69: error: arithmetic on a pointer to an incomplete type 'const value_type' (aka 'const infomap::PerIterationStats')
  720 |     std::__annotate_contiguous_container<_Allocator>(data(), data() + capacity(), __old_mid, __new_mid);
      |                                                              ~~~~~~ ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:736:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__annotate_contiguous_container' requested here
  736 |     __annotate_contiguous_container(data() + __old_size, data() + size());
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:544:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__annotate_shrink' requested here
  544 |     __annotate_shrink(__old_size);
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:251:16: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::clear' requested here
  251 |         __vec_.clear();
      |                ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
In file included from infomap/infomap/InfomapContext.cpp:28:
In file included from infomap/infomap/InfomapContext.h:30:
In file included from infomap/infomap/../io/Config.h:31:
In file included from /usr/local/clang21/bin/../include/c++/v1/iomanip:558:
In file included from /usr/local/clang21/bin/../include/c++/v1/deque:2656:
In file included from /usr/local/clang21/bin/../include/c++/v1/functional:601:
In file included from /usr/local/clang21/bin/../include/c++/v1/vector:314:
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:736:44: error: arithmetic on a pointer to an incomplete type 'const value_type' (aka 'const infomap::PerIterationStats')
  736 |     __annotate_contiguous_container(data() + __old_size, data() + size());
      |                                     ~~~~~~ ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:544:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__annotate_shrink' requested here
  544 |     __annotate_shrink(__old_size);
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:251:16: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::clear' requested here
  251 |         __vec_.clear();
      |                ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
In file included from infomap/infomap/InfomapContext.cpp:28:
In file included from infomap/infomap/InfomapContext.h:30:
In file included from infomap/infomap/../io/Config.h:31:
In file included from /usr/local/clang21/bin/../include/c++/v1/iomanip:53:
In file included from /usr/local/clang21/bin/../include/c++/v1/__locale_dir/money.h:17:
In file included from /usr/local/clang21/bin/../include/c++/v1/__locale:20:
In file included from /usr/local/clang21/bin/../include/c++/v1/__mutex/once_flag.h:22:
In file included from /usr/local/clang21/bin/../include/c++/v1/tuple:1438:
In file included from /usr/local/clang21/bin/../include/c++/v1/exception:97:
In file included from /usr/local/clang21/bin/../include/c++/v1/new:94:
/usr/local/clang21/bin/../include/c++/v1/__new/allocate.h:56:59: error: invalid application of 'alignof' to an incomplete type 'infomap::PerIterationStats'
   56 |                     [[__maybe_unused__]] size_t __align = _LIBCPP_ALIGNOF(_Tp)) _NOEXCEPT {
      |                                                           ^~~~~~~~~~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__config:351:34: note: expanded from macro '_LIBCPP_ALIGNOF'
  351 | #    define _LIBCPP_ALIGNOF(_Tp) alignof(_Tp)
      |                                  ^~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__memory/allocator.h:120:7: note: in instantiation of default function argument expression for '__libcpp_deallocate<infomap::PerIterationStats>' required here
  120 |       std::__libcpp_deallocate<_Tp>(__p, __element_count(__n));
      |       ^
/usr/local/clang21/bin/../include/c++/v1/__memory/allocator_traits.h:289:9: note: in instantiation of member function 'std::allocator<infomap::PerIterationStats>::deallocate' requested here
  289 |     __a.deallocate(__p, __n);
      |         ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:253:25: note: in instantiation of member function 'std::allocator_traits<std::allocator<infomap::PerIterationStats>>::deallocate' requested here
  253 |         __alloc_traits::deallocate(__vec_.__alloc_, __vec_.__begin_, __vec_.capacity());
      |                         ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
3 warnings and 6 errors generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:201: infomap/infomap/Node.o] Error 1
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c infomap/io/BipartiteClusterReader.cpp -o infomap/io/BipartiteClusterReader.o
1 warning generated.
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c infomap/io/version.cpp -o infomap/io/version.o
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c infomap/io/ClusterReader.cpp -o infomap/io/ClusterReader.o
In file included from infomap/infomap/InfomapBase.cpp:28:
In file included from infomap/infomap/InfomapBase.h:33:
infomap/infomap/../utils/MersenneTwister.h:333:17: warning: arithmetic between different enumeration types ('MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:60:5)' and 'MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:64:5)') is deprecated [-Wdeprecated-anon-enum-enum-conversion]
  333 |     for ( i = N - M; i--; ++p )
      |               ~ ^ ~
infomap/infomap/../utils/MersenneTwister.h:340:24: warning: arithmetic between different enumeration types ('MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:64:5)' and 'MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:60:5)') is deprecated [-Wdeprecated-anon-enum-enum-conversion]
  340 |         *p = twist( p[M-N], p[0], p[1] );
      |                       ~^~
infomap/infomap/../utils/MersenneTwister.h:343:20: warning: arithmetic between different enumeration types ('MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:64:5)' and 'MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:60:5)') is deprecated [-Wdeprecated-anon-enum-enum-conversion]
  343 |     *p = twist( p[M-N], p[0], state[0] );
      |                   ~^~
In file included from infomap/infomap/MultiplexNetwork.cpp:39:
In file included from infomap/infomap/../utils/infomath.h:33:
infomap/infomap/../utils/MersenneTwister.h:333:17: warning: arithmetic between different enumeration types ('MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:60:5)' and 'MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:64:5)') is deprecated [-Wdeprecated-anon-enum-enum-conversion]
  333 |     for ( i = N - M; i--; ++p )
      |               ~ ^ ~
infomap/infomap/../utils/MersenneTwister.h:340:24: warning: arithmetic between different enumeration types ('MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:64:5)' and 'MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:60:5)') is deprecated [-Wdeprecated-anon-enum-enum-conversion]
  340 |         *p = twist( p[M-N], p[0], p[1] );
      |                       ~^~
infomap/infomap/../utils/MersenneTwister.h:343:20: warning: arithmetic between different enumeration types ('MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:64:5)' and 'MTRand::(unnamed enum at infomap/infomap/../utils/MersenneTwister.h:60:5)') is deprecated [-Wdeprecated-anon-enum-enum-conversion]
  343 |     *p = twist( p[M-N], p[0], state[0] );
      |                   ~^~
infomap/infomap/MultiplexNetwork.cpp:270:22: warning: variable 'numAdjusted' set but not used [-Wunused-but-set-variable]
  270 |         unsigned int numAdjusted = 0;
      |                      ^
infomap/infomap/MemNetwork.cpp:445:18: warning: variable 'numExactMatches' set but not used [-Wunused-but-set-variable]
  445 |     unsigned int numExactMatches = 0;
      |                  ^
infomap/infomap/MemNetwork.cpp:446:18: warning: variable 'numPartialMatches' set but not used [-Wunused-but-set-variable]
  446 |     unsigned int numPartialMatches = 0;
      |                  ^
infomap/infomap/MemNetwork.cpp:447:18: warning: variable 'numShiftedMatches' set but not used [-Wunused-but-set-variable]
  447 |     unsigned int numShiftedMatches = 0;
      |                  ^
infomap/infomap/MemNetwork.cpp:525:18: warning: unused variable 'numStateLinksBefore' [-Wunused-variable]
  525 |     unsigned int numStateLinksBefore = m_numStateLinks;
      |                  ^~~~~~~~~~~~~~~~~~~
infomap/infomap/MemNetwork.cpp:528:18: warning: unused variable 'numAggregatedLinksBefore' [-Wunused-variable]
  528 |     unsigned int numAggregatedLinksBefore = m_numAggregatedStateLinks;
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~
infomap/infomap/MemNetwork.cpp:529:18: warning: variable 'numExactLinksAdded' set but not used [-Wunused-but-set-variable]
  529 |     unsigned int numExactLinksAdded = 0;
      |                  ^
infomap/infomap/MemNetwork.cpp:530:18: warning: variable 'numPartialLinksAdded' set but not used [-Wunused-but-set-variable]
  530 |     unsigned int numPartialLinksAdded = 0;
      |                  ^
infomap/infomap/MemNetwork.cpp:531:18: warning: variable 'numShiftedLinksAdded' set but not used [-Wunused-but-set-variable]
  531 |     unsigned int numShiftedLinksAdded = 0;
      |                  ^
infomap/infomap/MemNetwork.cpp:532:18: warning: variable 'numExactAggregations' set but not used [-Wunused-but-set-variable]
  532 |     unsigned int numExactAggregations = 0;
      |                  ^
infomap/infomap/MemNetwork.cpp:533:18: warning: variable 'numPartialAggregations' set but not used [-Wunused-but-set-variable]
  533 |     unsigned int numPartialAggregations = 0;
      |                  ^
infomap/infomap/MemNetwork.cpp:534:18: warning: variable 'numShiftedAggregations' set but not used [-Wunused-but-set-variable]
  534 |     unsigned int numShiftedAggregations = 0;
      |                  ^
infomap/infomap/MemNetwork.cpp:535:18: warning: variable 'numIncompleteLinksWithExactMatches' set but not used [-Wunused-but-set-variable]
  535 |     unsigned int numIncompleteLinksWithExactMatches = 0;
      |                  ^
infomap/infomap/MemNetwork.cpp:536:18: warning: variable 'numIncompleteLinksWithPartialMatches' set but not used [-Wunused-but-set-variable]
  536 |     unsigned int numIncompleteLinksWithPartialinfomap/infomap/MemFlowNetwork.cppM:a176t:c22h:e swarning:  variable 'numDanglingStateNodes' set but not used [-Wunused-but-set-variable]=
 0;
      |                  ^
infomap/infomap/MemNetwork.cpp  :176537 | : 18 :   warning:  variable 'numIncompleteLinksWithShiftedMatches' set but not used [-Wunused-but-set-variable] 
  unsig  n537e | d   i n tu nnsuimgDnaendg liinntg SntuamtIenNcoodmepsl e=t e0L;i
n      k| s                     ^W
ithShinfomap/infomap/MemFlowNetwork.cppi:f177t:e22d:M awarning: tvariable 'numDanglingStateNodesCompleted' set but not used [-Wunused-but-set-variable]c
hes =   1770 | ; 
        |                   ^ 
   unsigned int numDanglingStateNodesCompleted = 0;
      |                      ^
In file included from infomap/infomap/InfomapBase.cpp:28:
In file included from infomap/infomap/InfomapBase.h:30:
In file included from infomap/infomap/TreeData.h:31:
In file included from /usr/local/clang21/bin/../include/c++/v1/vector:314:
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:388:48: error: arithmetic on a pointer to an incomplete type 'infomap::PerIterationStats'
  388 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                   ~~~~~~~~~~~~ ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:542:28: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::size' requested here
  542 |     size_type __old_size = size();
      |                            ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:251:16: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::clear' requested here
  251 |         __vec_.clear();
      |                ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
In file included from infomap/infomap/InfomapBase.cpp:28:
In file included from infomap/infomap/InfomapBase.h:30:
In file included from infomap/infomap/TreeData.h:31:
In file included from /usr/local/clang21/bin/../include/c++/v1/vector:314:
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:763:65: error: arithmetic on a pointer to an incomplete type 'infomap::PerIterationStats'
  763 |       __alloc_traits::destroy(this->__alloc_, std::__to_address(--__soon_to_be_end));
      |                                                                 ^ ~~~~~~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:543:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__base_destruct_at_end' requested here
  543 |     __base_destruct_at_end(this->__begin_);
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:251:16: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::clear' requested here
  251 |         __vec_.clear();
      |                ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
In file included from infomap/infomap/InfomapBase.cpp:28:
In file included from infomap/infomap/InfomapBase.h:30:
In file included from infomap/infomap/TreeData.h:31:
In file included from /usr/local/clang21/bin/../include/c++/v1/vector:314:
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:391:48: error: arithmetic on a pointer to an incomplete type 'infomap::PerIterationStats'
  391 |     return static_cast<size_type>(this->__cap_ - this->__begin_);
      |                                   ~~~~~~~~~~~~ ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:720:71: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::capacity' requested here
  720 |     std::__annotate_contiguous_container<_Allocator>(data(), data() + capacity(), __old_mid, __new_mid);
      |                                                                       ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:736:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__annotate_contiguous_container' requested here
  736 |     __annotate_contiguous_container(data() + __old_size, data() + size());
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:544:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__annotate_shrink' requested here
  544 |     __annotate_shrink(__old_size);
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:251:16: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::clear' requested here
  251 |         __vec_.clear();
      |                ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
In file included from infomap/infomap/InfomapBase.cpp:28:
In file included from infomap/infomap/InfomapBase.h:30:
In file included from infomap/infomap/TreeData.h:31:
In file included from /usr/local/clang21/bin/../include/c++/v1/vector:314:
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:720:69: error: arithmetic on a pointer to an incomplete type 'const value_type' (aka 'const infomap::PerIterationStats')
  720 |     std::__annotate_contiguous_container<_Allocator>(data(), data() + capacity(), __old_mid, __new_mid);
      |                                                              ~~~~~~ ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:736:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__annotate_contiguous_container' requested here
  736 |     __annotate_contiguous_container(data() + __old_size, data() + size());
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:544:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__annotate_shrink' requested here
  544 |     __annotate_shrink(__old_size);
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:251:16: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::clear' requested here
  251 |         __vec_.clear();
      |                ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
In file included from infomap/infomap/InfomapBase.cpp:28:
In file included from infomap/infomap/InfomapBase.h:30:
In file included from infomap/infomap/TreeData.h:31:
In file included from /usr/local/clang21/bin/../include/c++/v1/vector:314:
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:736:44: error: arithmetic on a pointer to an incomplete type 'const value_type' (aka 'const infomap::PerIterationStats')
  736 |     __annotate_contiguous_container(data() + __old_size, data() + size());
      |                                     ~~~~~~ ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:544:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__annotate_shrink' requested here
  544 |     __annotate_shrink(__old_size);
      |     ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:251:16: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::clear' requested here
  251 |         __vec_.clear();
      |                ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
In file included from infomap/infomap/InfomapBase.cpp:28:
In file included from infomap/infomap/InfomapBase.h:30:
In file included from infomap/infomap/TreeData.h:30:
In file included from /usr/local/clang21/bin/../include/c++/v1/string:611:
In file included from /usr/local/clang21/bin/../include/c++/v1/__memory/allocator.h:19:
/usr/local/clang21/bin/../include/c++/v1/__new/allocate.h:56:59: error: invalid application of 'alignof' to an incomplete type 'infomap::PerIterationStats'
   56 |                     [[__maybe_unused__]] size_t __align = _LIBCPP_ALIGNOF(_Tp)) _NOEXCEPT {
      |                                                           ^~~~~~~~~~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__config:351:34: note: expanded from macro '_LIBCPP_ALIGNOF'
  351 | #    define _LIBCPP_ALIGNOF(_Tp) alignof(_Tp)
      |                                  ^~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__memory/allocator.h:120:7: note: in instantiation of default function argument expression for '__libcpp_deallocate<infomap::PerIterationStats>' required here
  120 |       std::__libcpp_deallocate<_Tp>(__p, __element_count(__n));
      |       ^
/usr/local/clang21/bin/../include/c++/v1/__memory/allocator_traits.h:289:9: note: in instantiation of member function 'std::allocator<infomap::PerIterationStats>::deallocate' requested here
  289 |     __a.deallocate(__p, __n);
      |         ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:253:25: note: in instantiation of member function 'std::allocator_traits<std::allocator<infomap::PerIterationStats>>::deallocate' requested here
  253 |         __alloc_traits::deallocate(__vec_.__alloc_, __vec_.__begin_, __vec_.capacity());
      |                         ^
/usr/local/clang21/bin/../include/c++/v1/__vector/vector.h:262:67: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::__destroy_vector::operator()' requested here
  262 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
infomap/infomap/InfomapBase.h:54:5: note: in instantiation of member function 'std::vector<infomap::PerIterationStats>::~vector' requested here
   54 |     InfomapBase(const Config& conf, NodeFactoryBase* nodeFactory)
      |     ^
infomap/infomap/InfomapBase.h:46:8: note: forward declaration of 'infomap::PerIterationStats'
   46 | struct PerIterationStats;
      |        ^
3 warnings and 6 errors generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:201: infomap/infomap/InfomapContext.o] Error 1
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c infomap/io/ProgramInterface.cpp -o infomap/io/ProgramInterface.o
infomap/infomap/InfomapBase.cpp:329:28: warning: unused variable 's' [-Wunused-variable]
  329 |         PerIterationStats& s = m_iterationStats[i];
      |                            ^
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c infomap/utils/FileURI.cpp -o infomap/utils/FileURI.o
infomap/infomap/InfomapBase.cpp:372:22: warning: unused variable 'numFields' [-Wunused-variable]
  372 |         unsigned int numFields = 5 + ((2 + (m_config.isMemoryNetwork() ? 1 : 0)) * (m_config.twoLevel ? 1 : 2));
      |                      ^~~~~~~~~
infomap/infomap/InfomapBase.cpp:376:16: warning: unused variable 'secondsMin' [-Wunused-variable]
  376 |         double secondsMin = m_iterationStats[0].seconds;
      |                ^~~~~~~~~~
infomap/infomap/InfomapBase.cpp:377:16: warning: unused variable 'secondsMax' [-Wunused-variable]
  377 |         double secondsMax = m_iterationStats[iLast].seconds;
      |                ^~~~~~~~~~
infomap/infomap/InfomapBase.cpp:378:16: warning: unused variable 'secondsMedian' [-Wunused-variable]
  378 |         double secondsMedian = m_iterationStats[numTrials / 2].seconds;
      |                ^~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:379:16: warning: unused variable 'secondsAverage' [-Wunused-variable]
  379 |         double secondsAverage = std::accumulate(m_iterationStats.begin(),
      |                ^~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:383:22: warning: unused variable 'numTopModulesMin' [-Wunused-variable]
  383 |         unsigned int numTopModulesMin = m_iterationStats[0].numTopModules;
      |                      ^~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:384:22: warning: unused variable 'numTopModulesMax' [-Wunused-variable]
  384 |         unsigned int numTopModulesMax = m_iterationStats[iLast].numTopModules;
      |                      ^~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:385:22: warning: unused variable 'numTopModulesMedian' [-Wunused-variable]
  385 |         unsigned int numTopModulesMedian = m_iterationStats[numTrials / 2].numTopModules;
      |                      ^~~~~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:386:16: warning: unused variable 'numTopModulesAverage' [-Wunused-variable]
  386 |         double numTopModulesAverage = std::accumulate(m_iterationStats.begin(),
      |                ^~~~~~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:390:16: warning: unused variable 'topPerplexityMin' [-Wunused-variable]
  390 |         double topPerplexityMin = m_iterationStats[0].topPerplexity;
      |                ^~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:391:16: warning: unused variable 'topPerplexityMax' [-Wunused-variable]
  391 |         double topPerplexityMax = m_iterationStats[iLast].topPerplexity;
      |                ^~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:392:16: warning: unused variable 'topPerplexityMedian' [-Wunused-variable]
  392 |         double topPerplexityMedian = m_iterationStats[numTrials / 2].topPerplexity;
      |                ^~~~~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:393:16: warning: unused variable 'topPerplexityAverage' [-Wunused-variable]
  393 |         double topPerplexityAverage = std::accumulate(m_iterationStats.begin(),
      |                ^~~~~~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:397:16: warning: unused variable 'topOverlapMin' [-Wunused-variable]
  397 |         double topOverlapMin = m_iterationStats[0].topOverlap;
      |                ^~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:398:16: warning: unused variable 'topOverlapMax' [-Wunused-variable]
  398 |         double topOverlapMax = m_iterationStats[iLast].topOverlap;
      |                ^~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:399:16: warning: unused variable 'topOverlapMedian' [-Wunused-variable]
  399 |         double topOverlapMedian = m_iterationStats[numTrials / 2].topOverlap;
      |                ^~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:400:16: warning: unused variable 'topOverlapAverage' [-Wunused-variable]
  400 |         double topOverlapAverage = std::accumulate(m_iterationStats.begin(),
      |                ^~~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:404:22: warning: unused variable 'numBottomModulesMin' [-Wunused-variable]
  404 |         unsigned int numBottomModulesMin = m_iterationStats[0].numBottomModules;
      |                      ^~~~~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:405:22: warning: unused variable 'numBottomModulesMax' [-Wunused-variable]
  405 |         unsigned int numBottomModulesMax = m_iterationStats[iLast].numBottomModules;
      |                      ^~~~~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:406:22: warning: unused variable 'numBottomModulesMedian' [-Wunused-variable]
  406 |         unsigned int numBottomModulesMedian = m_iterationStats[numTrials / 2].numBottomModules;
      |                      ^~~~~~~~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:407:16: warning: unused variable 'numBottomModulesAverage' [-Wunused-variable]
  407 |         double numBottomModulesAverage = std::accumulate(m_iterationStats.begin(),
      |                ^~~~~~~~~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:411:16: warning: unused variable 'bottomPerplexityMin' [-Wunused-variable]
  411 |         double bottomPerplexityMin = m_iterationStats[0].bottomPerplexity;
      |                ^~~~~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:412:16: warning: unused variable 'bottomPerplexityMax' [-Wunused-variable]
  412 |         double bottomPerplexityMax = m_iterationStats[iLast].bottomPerplexity;
      |                ^~~~~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:413:16: warning: unused variable 'bottomPerplexityMedian' [-Wunused-variable]
  413 |         double bottomPerplexityMedian = m_iterationStats[numTrials / 2].bottomPerplexity;
      |                ^~~~~~~~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:414:16: warning: unused variable 'bottomPerplexityAverage' [-Wunused-variable]
  414 |         double bottomPerplexityAverage = std::accumulate(m_iterationStats.begin(),
      |                ^~~~~~~~~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:418:16: warning: unused variable 'bottomOverlapMin' [-Wunused-variable]
  418 |         double bottomOverlapMin = m_iterationStats[0].bottomOverlap;
      |                ^~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:419:16: warning: unused variable 'bottomOverlapMax' [-Wunused-variable]
  419 |         double bottomOverlapMax = m_iterationStats[iLast].bottomOverlap;
      |                ^~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:420:16: warning: unused variable 'bottomOverlapMedian' [-Wunused-variable]
  420 |         double bottomOverlapMedian = m_iterationStats[numTrials / 2].bottomOverlap;
      |                ^~~~~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:421:16: warning: unused variable 'bottomOverlapAverage' [-Wunused-variable]
  421 |         double bottomOverlapAverage = std::accumulate(m_iterationStats.begin(),
      |                ^~~~~~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:425:22: warning: unused variable 'maxDepthMin' [-Wunused-variable]
  425 |         unsigned int maxDepthMin = m_iterationStats[0].maxDepth;
      |                      ^~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:426:22: warning: unused variable 'maxDepthMax' [-Wunused-variable]
  426 |         unsigned int maxDepthMax = m_iterationStats[iLast].maxDepth;
      |                      ^~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:427:22: warning: unused variable 'maxDepthMedian' [-Wunused-variable]
  427 |         unsigned int maxDepthMedian = m_iterationStats[numTrials / 2].maxDepth;
      |                      ^~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:428:16: warning: unused variable 'maxDepthAverage' [-Wunused-variable]
  428 |         double maxDepthAverage = std::accumulate(m_iterationStats.begin(),
      |                ^~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:432:16: warning: unused variable 'weightedDepthMin' [-Wunused-variable]
  432 |         double weightedDepthMin = m_iterationStats[0].weightedDepth;
      |                ^~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:433:16: warning: unused variable 'weightedDepthMax' [-Wunused-variable]
  433 |         double weightedDepthMax = m_iterationStats[iLast].weightedDepth;
      |                ^~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:434:16: warning: unused variable 'weightedDepthMedian' [-Wunused-variable]
  434 |         double weightedDepthMedian = m_iterationStats[numTrials / 2].weightedDepth;
      |                ^~~~~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:435:16: warning: unused variable 'weightedDepthAverage' [-Wunused-variable]
  435 |         double weightedDepthAverage = std::accumulate(m_iterationStats.begin(),
      |                ^~~~~~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:439:16: warning: unused variable 'codelengthMin' [-Wunused-variable]
  439 |         double codelengthMin = m_iterationStats[0].codelength;
      |                ^~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:440:16: warning: unused variable 'codelengthMax' [-Wunused-variable]
  440 |         double codelengthMax = m_iterationStats[iLast].codelength;
      |                ^~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:441:16: warning: unused variable 'codelengthMedian' [-Wunused-variable]
  441 |         double codelengthMedian = m_iterationStats[numTrials / 2].codelength;
      |                ^~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:442:16: warning: unused variable 'codelengthAverage' [-Wunused-variable]
  442 |         double codelengthAverage = std::accumulate(m_iterationStats.begin(),
      |                ^~~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:128:18: warning: variable 'bestNumLevels' set but not used [-Wunused-but-set-variable]
  128 |     unsigned int bestNumLevels = 0;
      |                  ^
infomap/infomap/InfomapBase.cpp:270:18: warning: unused variable 'fieldWidth' [-Wunused-variable]
  270 |     unsigned int fieldWidth = 16;
      |                  ^~~~~~~~~~
infomap/infomap/InfomapBase.cpp:622:12: warning: variable 'entropyRate' set but not used [-Wunused-but-set-variable]
  622 |     double entropyRate = 0.0;
      |            ^
infomap/infomap/InfomapBase.cpp:623:12: warning: variable 'physEntropyRate' set but not used [-Wunused-but-set-variable]
  623 |     double physEntropyRate = 0.0;
      |            ^
infomap/infomap/InfomapBase.cpp:1096:22: warning: unused variable 'numOptimizationLoops' [-Wunused-variable]
 1096 |         unsigned int numOptimizationLoops = optimizeModules();
      |                      ^~~~~~~~~~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:1066:18: warning: unused variable 'networkLevel' [-Wunused-variable]
 1066 |     unsigned int networkLevel = 0;
      |                  ^~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:1468:12: warning: variable 'compression' set but not used [-Wunused-but-set-variable]
 1468 |     double compression = (oldCodelength - codelength)/oldCodelength;
      |            ^
infomap/infomap/InfomapBase.cpp:1597:22: warning: unused variable 'numFastLoops' [-Wunused-variable]
 1597 |         unsigned int numFastLoops = optimizeModulesCrude();
      |                      ^~~~~~~~~~~~
infomap/infomap/InfomapBase.cpp:1623:18: warning: variable 'numOptimizationLoops' set but not used [-Wunused-but-set-variable]
 1623 |     unsigned int numOptimizationLoops = optimizeModules();
      |                  ^
infomap/infomap/InfomapBase.cpp:2627:14: warning: unused variable 'writeEdges' [-Wunused-variable]
 2627 |         bool writeEdges = m_config.printBinaryFlowTree || m_config.printFlowTree || m_config.printMap || m_externalOutput;
      |              ^~~~~~~~~~
infomap/io/HierarchicalNetwork.cpp:274:18: warning: variable 'numEdges' set but not used [-Wunused-but-set-variable]
  274 |     unsigned int numEdges = 0;
      |                  ^
2 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DCRAN  -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c infomap/utils/Logger.cpp -o infomap/utils/Logger.o
55 warnings and 6 errors generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:201: infomap/infomap/InfomapBase.o] Error 1
14 warnings generated.
1 warning generated.
4 warnings generated.
infomap/io/ProgramInterface.cpp:128:32: warning: unused variable 'numSpaces' [-Wunused-variable]
  128 |         std::string::size_type numSpaces = maxLength + 3 - optionStrings[i].length();
      |                                ^~~~~~~~~
1 warning generated.
make[1]: Target 'all' not remade because of errors.
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/multinet/src'
ERROR: compilation failed for package ‘multinet’
* removing ‘/data/gannet/ripley/R/packages/tests-clang/multinet.Rcheck/multinet’