Install log for 'mr.mashr'

* installing *source* package ‘mr.mashr’ ...
** this is package ‘mr.mashr’ version ‘0.3.44’
** package ‘mr.mashr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 21.1.8’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/mr.mashr/src'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -fopenmp -DARMA_WARN_LEVEL=1 -DARMA_64BIT_WORD -DARMA_DONT_USE_OPENMP -DARMA_USE_TBB_ALLOC -DARMA_NO_DEBUG -DARMA_USE_BLAS -DARMA_USE_LAPACK -DRCPP_PARALLEL_USE_TBB=1 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -fopenmp -DARMA_WARN_LEVEL=1 -DARMA_64BIT_WORD -DARMA_DONT_USE_OPENMP -DARMA_USE_TBB_ALLOC -DARMA_NO_DEBUG -DARMA_USE_BLAS -DARMA_USE_LAPACK -DRCPP_PARALLEL_USE_TBB=1 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c bayes_reg_mv.cpp -o bayes_reg_mv.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -fopenmp -DARMA_WARN_LEVEL=1 -DARMA_64BIT_WORD -DARMA_DONT_USE_OPENMP -DARMA_USE_TBB_ALLOC -DARMA_NO_DEBUG -DARMA_USE_BLAS -DARMA_USE_LAPACK -DRCPP_PARALLEL_USE_TBB=1 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c misc.cpp -o misc.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -fopenmp -DARMA_WARN_LEVEL=1 -DARMA_64BIT_WORD -DARMA_DONT_USE_OPENMP -DARMA_USE_TBB_ALLOC -DARMA_NO_DEBUG -DARMA_USE_BLAS -DARMA_USE_LAPACK -DRCPP_PARALLEL_USE_TBB=1 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c mr_mash_updates.cpp -o mr_mash_updates.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -fopenmp -DARMA_WARN_LEVEL=1 -DARMA_64BIT_WORD -DARMA_DONT_USE_OPENMP -DARMA_USE_TBB_ALLOC -DARMA_NO_DEBUG -DARMA_USE_BLAS -DARMA_USE_LAPACK -DRCPP_PARALLEL_USE_TBB=1 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c scale.cpp -o scale.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -fopenmp -DARMA_WARN_LEVEL=1 -DARMA_64BIT_WORD -DARMA_DONT_USE_OPENMP -DARMA_USE_TBB_ALLOC -DARMA_NO_DEBUG -DARMA_USE_BLAS -DARMA_USE_LAPACK -DRCPP_PARALLEL_USE_TBB=1 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c update_order.cpp -o update_order.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o mr.mashr.so RcppExports.o bayes_reg_mv.o misc.o mr_mash_updates.o scale.o update_order.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/mr.mashr/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/mr.mashr/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/mr.mashr/src'
installing to /data/gannet/ripley/R/packages/tests-clang/mr.mashr.Rcheck/00LOCK-mr.mashr/00new/mr.mashr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mr.mashr)