• using R Under development (unstable) (2022-06-27 r82528)
• using platform: x86_64-pc-linux-gnu (64-bit)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘mptools/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘mptools’ version ‘1.0.1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘mptools’ can be installed ... [45s/119s] OK
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [63s/163s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking LazyData ... NOTE
    'LazyData' is specified without a 'data' directory
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [15s/38s] ERROR
  Running examples in ‘mptools-Ex.R’ failed
  The error most likely occurred in:
  
  > ### Name: kch
  > ### Title: Extract Metapop KCH
  > ### Aliases: kch
  >
  > ### ** Examples
  >
  > mp <- system.file('example.mp', package='mptools')
  > k <- kch(meta=meta(mp), path=dirname(mp))
  Extracting population metadata from file:
  /data/gannet/ripley/R/packages/tests-clang/mptools.Rcheck/mptools/example.mp
  Warning in gsub("[^[:print:]]", "", metapop[1]) :
    unable to translate 'Metapopulation input file (5.1) map=<ff>' to a wide string
  Error in gsub("[^[:print:]]", "", metapop[1]) : input string 1 is invalid
  Calls: kch ... path.expand -> file.path -> meta -> check_mp -> gsub
  Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking re-building of vignette outputs ... [16s/41s] ERROR
  Error(s) in re-building vignettes:
  --- re-building ‘intro.Rmd’ using rmarkdown
  Extracting simulation results from file:
  /data/gannet/ripley/R/packages/tests-clang/mptools.Rcheck/mptools/example.mp
  Quitting from lines 77-79 (intro.Rmd)
  Error: processing vignette 'intro.Rmd' failed with diagnostics:
  input string 1 is invalid
  --- failed re-building ‘intro.Rmd’
  
  SUMMARY: processing the following file failed:
    ‘intro.Rmd’
  
  Error: Vignette re-building failed.
  Execution halted
  
• checking PDF version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 2 ERRORs, 1 NOTE