* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/motherduck.Rcheck’ * using R Under development (unstable) (2026-01-05 r89271) * using platform: x86_64-pc-linux-gnu * R was compiled by clang version 21.1.8 flang version 21.1.8 * running under: Fedora Linux 42 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘motherduck/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘motherduck’ version ‘0.2.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘motherduck’ can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/motherduck-00install.html' for details. * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [9s/15s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [27s/44s] ERROR Running ‘testthat.R’ [26s/44s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(motherduck) > library(DBI) > library(openxlsx) > > test_check("motherduck") -- Status: --------------------------------------------------------------------- -- Connection Status Report: -- ! You are not connected to MotherDuck -- User Report: -- * User Name: "duckdb" * Role: "duckdb" -- Catalog Report: -- * Current Database: "memory" * Current Schema: "main" * # Total Catalogs you have access to: 3 * # Total Tables you have access to: 0 * # Total Shares you have access to: 0 * # Tables in this catalog you have access to: 0 * # Tables in this catalog & schema you have access to: 0 -- Action Report: -- v Inserted into existing database "memory" v Created new schema "test_schema" > Current role: `duckdb` -- Status: --------------------------------------------------------------------- -- User Report: -- * User Name: "duckdb" * Role: "duckdb" -- Catalog Report: -- * Current Database: "memory" * Current Schema: "test_schema" * # Total Catalogs you have access to: 3 * # Total Tables you have access to: 0 * # Total Shares you have access to: 0 * # Tables in this catalog you have access to: 0 * # Tables in this catalog & schema you have access to: 0 > Current role: `duckdb` > Current role: `duckdb` > Current role: `duckdb` -- Status: --------------------------------------------------------------------- -- Connection Status Report: -- ! You are not connected to MotherDuck -- User Report: -- * User Name: "duckdb" * Role: "duckdb" -- Catalog Report: -- * Current Database: "memory" * Current Schema: "main" * # Total Catalogs you have access to: 3 * # Total Tables you have access to: 1 * # Total Shares you have access to: 0 * # Tables in this catalog you have access to: 1 * # Tables in this catalog & schema you have access to: 1 -- Action Report: -- v Inserted into existing database "memory" v Using existing schema "main" -- Status: --------------------------------------------------------------------- -- Connection Status Report: -- ! You are not connected to MotherDuck -- User Report: -- * User Name: "duckdb" * Role: "duckdb" -- Catalog Report: -- * Current Database: "memory" * Current Schema: "main" * # Total Catalogs you have access to: 3 * # Total Tables you have access to: 1 * # Total Shares you have access to: 0 * # Tables in this catalog you have access to: 1 * # Tables in this catalog & schema you have access to: 1 -- Action Report: -- v Inserted into existing database "memory" v Using existing schema "main" -- Status: --------------------------------------------------------------------- -- Connection Status Report: -- ! You are not connected to MotherDuck -- User Report: -- * User Name: "duckdb" * Role: "duckdb" -- Catalog Report: -- * Current Database: "memory" * Current Schema: "main" * # Total Catalogs you have access to: 3 * # Total Tables you have access to: 1 * # Total Shares you have access to: 0 * # Tables in this catalog you have access to: 1 * # Tables in this catalog & schema you have access to: 1 -- Action Report: -- v Inserted into existing database "memory" v Using existing schema "main" -- Status: --------------------------------------------------------------------- -- Connection Status Report: -- ! You are not connected to MotherDuck -- User Report: -- * User Name: "duckdb" * Role: "duckdb" -- Catalog Report: -- * Current Database: "memory" * Current Schema: "main" * # Total Catalogs you have access to: 3 * # Total Tables you have access to: 3 * # Total Shares you have access to: 0 * # Tables in this catalog you have access to: 3 * # Tables in this catalog & schema you have access to: 3 -- Action Report: -- v Inserted into existing database "memory" v Using existing schema "main" -- Status: --------------------------------------------------------------------- -- Connection Status Report: -- ! You are not connected to MotherDuck -- User Report: -- * User Name: "duckdb" * Role: "duckdb" -- Catalog Report: -- * Current Database: "memory" * Current Schema: "main" * # Total Catalogs you have access to: 3 * # Total Tables you have access to: 3 * # Total Shares you have access to: 0 * # Tables in this catalog you have access to: 3 * # Tables in this catalog & schema you have access to: 3 -- Action Report: -- v Inserted into existing database "memory" v Using existing schema "main" Note: method with signature 'DBIConnection#Id' chosen for function 'dbExistsTable', target signature 'duckdb_connection#Id'. "duckdb_connection#ANY" would also be valid -- Status: --------------------------------------------------------------------- -- Connection Status Report: -- ! You are not connected to MotherDuck -- User Report: -- * User Name: "duckdb" * Role: "duckdb" -- Catalog Report: -- * Current Database: "memory" * Current Schema: "main" * # Total Catalogs you have access to: 3 * # Total Tables you have access to: 0 * # Total Shares you have access to: 0 * # Tables in this catalog you have access to: 0 * # Tables in this catalog & schema you have access to: 0 -- Action Report: * Deleted "delete_table" from "[database_name]" in "main" -- Status: --------------------------------------------------------------------- -- Connection Status Report: -- ! You are not connected to MotherDuck -- User Report: -- * User Name: "duckdb" * Role: "duckdb" -- Catalog Report: -- * Current Database: "memory" * Current Schema: "main" * # Total Catalogs you have access to: 3 * # Total Tables you have access to: 0 * # Total Shares you have access to: 0 * # Tables in this catalog you have access to: 0 * # Tables in this catalog & schema you have access to: 0 -- Action Report: -- v Inserted into existing database "memory" v Created new schema "test_schema" -- Status: --------------------------------------------------------------------- -- Connection Status Report: -- ! You are not connected to MotherDuck -- User Report: -- * User Name: "duckdb" * Role: "duckdb" -- Catalog Report: -- * Current Database: "memory" * Current Schema: "main" * # Total Catalogs you have access to: 3 * # Total Tables you have access to: 1 * # Total Shares you have access to: 0 * # Tables in this catalog you have access to: 1 * # Tables in this catalog & schema you have access to: 0 -- Action Report: -- * Deleted "test_schema" schema and 1 tables -- Status: --------------------------------------------------------------------- -- Connection Status Report: -- ! You are not connected to MotherDuck -- User Report: -- * User Name: "duckdb" * Role: "duckdb" -- Catalog Report: -- * Current Database: "memory" * Current Schema: "main" * # Total Catalogs you have access to: 3 * # Total Tables you have access to: 0 * # Total Shares you have access to: 0 * # Tables in this catalog you have access to: 0 * # Tables in this catalog & schema you have access to: 0 -- Action Report: -- * Deleted "test_schema" schema and 1 tables -- Action Report: -- v Inserted into existing database "memory" v Using existing schema "main" v Overwrite existing table "mtcars_csv" Saving _problems/test-motherduck-405.R [ FAIL 1 | WARN 0 | SKIP 1 | PASS 22 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • empty test (1): 'test-motherduck.R:259:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-motherduck.R:405:7'): read_excel / successfully reads a excel and copies table to database ── Error in `purrr::map(ext_lst$valid_ext, function(x) DBI::dbExecute(.con, glue::glue("LOAD {x};")))`: i In index: 1. Caused by error in `duckdb_result()`: ! Invalid Error: Invalid Input Error: Initialization function "excel_duckdb_cpp_init" from file "/data/gannet/ripley/.local/share/R/duckdb/extensions/v1.4.3/linux_amd64/excel.duckdb_extension" threw an exception: "Missing DB manager" i Context: rapi_execute i Error type: INVALID [ FAIL 1 | WARN 0 | SKIP 1 | PASS 22 ] Error: ! Test failures. Execution halted * checking PDF version of manual ... [11s/15s] OK * checking HTML version of manual ... [9s/16s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR