- using R Under development (unstable) (2026-01-05 r89271)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 21.1.8
flang version 21.1.8
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘motherduck/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘motherduck’ version ‘0.2.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘motherduck’ can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [9s/15s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [27s/44s] ERROR
Running ‘testthat.R’ [26s/44s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(motherduck)
> library(DBI)
> library(openxlsx)
>
> test_check("motherduck")
-- Status: ---------------------------------------------------------------------
-- Connection Status Report: --
! You are not connected to MotherDuck
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "main"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 0
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 0
* # Tables in this catalog & schema you have access to: 0
-- Action Report: --
v Inserted into existing database "memory"
v Created new schema "test_schema"
> Current role: `duckdb`
-- Status: ---------------------------------------------------------------------
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "test_schema"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 0
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 0
* # Tables in this catalog & schema you have access to: 0
> Current role: `duckdb`
> Current role: `duckdb`
> Current role: `duckdb`
-- Status: ---------------------------------------------------------------------
-- Connection Status Report: --
! You are not connected to MotherDuck
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "main"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 1
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 1
* # Tables in this catalog & schema you have access to: 1
-- Action Report: --
v Inserted into existing database "memory"
v Using existing schema "main"
-- Status: ---------------------------------------------------------------------
-- Connection Status Report: --
! You are not connected to MotherDuck
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "main"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 1
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 1
* # Tables in this catalog & schema you have access to: 1
-- Action Report: --
v Inserted into existing database "memory"
v Using existing schema "main"
-- Status: ---------------------------------------------------------------------
-- Connection Status Report: --
! You are not connected to MotherDuck
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "main"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 1
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 1
* # Tables in this catalog & schema you have access to: 1
-- Action Report: --
v Inserted into existing database "memory"
v Using existing schema "main"
-- Status: ---------------------------------------------------------------------
-- Connection Status Report: --
! You are not connected to MotherDuck
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "main"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 3
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 3
* # Tables in this catalog & schema you have access to: 3
-- Action Report: --
v Inserted into existing database "memory"
v Using existing schema "main"
-- Status: ---------------------------------------------------------------------
-- Connection Status Report: --
! You are not connected to MotherDuck
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "main"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 3
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 3
* # Tables in this catalog & schema you have access to: 3
-- Action Report: --
v Inserted into existing database "memory"
v Using existing schema "main"
Note: method with signature 'DBIConnection#Id' chosen for function 'dbExistsTable',
target signature 'duckdb_connection#Id'.
"duckdb_connection#ANY" would also be valid
-- Status: ---------------------------------------------------------------------
-- Connection Status Report: --
! You are not connected to MotherDuck
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "main"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 0
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 0
* # Tables in this catalog & schema you have access to: 0
-- Action Report:
* Deleted "delete_table" from "[database_name]" in "main"
-- Status: ---------------------------------------------------------------------
-- Connection Status Report: --
! You are not connected to MotherDuck
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "main"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 0
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 0
* # Tables in this catalog & schema you have access to: 0
-- Action Report: --
v Inserted into existing database "memory"
v Created new schema "test_schema"
-- Status: ---------------------------------------------------------------------
-- Connection Status Report: --
! You are not connected to MotherDuck
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "main"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 1
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 1
* # Tables in this catalog & schema you have access to: 0
-- Action Report: --
* Deleted "test_schema" schema and 1 tables
-- Status: ---------------------------------------------------------------------
-- Connection Status Report: --
! You are not connected to MotherDuck
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "main"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 0
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 0
* # Tables in this catalog & schema you have access to: 0
-- Action Report: --
* Deleted "test_schema" schema and 1 tables
-- Action Report: --
v Inserted into existing database "memory"
v Using existing schema "main"
v Overwrite existing table "mtcars_csv"
Saving _problems/test-motherduck-405.R
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 22 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-motherduck.R:259:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-motherduck.R:405:7'): read_excel / successfully reads a excel and copies table to database ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `purrr::map(ext_lst$valid_ext, function(x) DBI::dbExecute(.con, glue::glue("LOAD {x};")))`: i In index: 1.
Caused by error in `duckdb_result()`:
! Invalid Error: Invalid Input Error: Initialization function "excel_duckdb_cpp_init" from file "/data/gannet/ripley/.local/share/R/duckdb/extensions/v1.4.3/linux_amd64/excel.duckdb_extension" threw an exception: "Missing DB manager"
i Context: rapi_execute
i Error type: INVALID
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 22 ]
Error:
! Test failures.
Execution halted
- checking PDF version of manual ... [11s/15s] OK
- checking HTML version of manual ... [9s/16s] OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR