• using R Under development (unstable) (2019-12-06 r77536)
• using platform: x86_64-pc-linux-gnu (64-bit)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘modiscloud/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘modiscloud’ version ‘0.14’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘modiscloud’ can be installed ... [13s/15s] OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... NOTE
  'library' or 'require' calls to packages already attached by Depends:
    ‘date’ ‘raster’ ‘rgdal’ ‘sfsmisc’
    Please remove these calls from your code.
  Packages in Depends field not imported from:
    ‘date’ ‘raster’ ‘rgdal’ ‘sfsmisc’ ‘sp’
    These packages need to be imported from (in the NAMESPACE file)
    for when this namespace is loaded but not attached.
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [12s/16s] NOTE
  byteint2bit: no visible global function definition for ‘digitsBase’
  check_for_matching_geolocation_files: no visible global function
    definition for ‘head’
  extract_bit: no visible global function definition for ‘digitsBase’
  fermat.test: no visible global function definition for ‘runif’
  get_bitgrid: no visible global function definition for ‘raster’
  get_bitgrid: no visible global function definition for ‘coordinates’
  get_bitgrid: no visible global function definition for ‘extract’
  get_bitgrid_2bits: no visible global function definition for ‘raster’
  get_bitgrid_2bits: no visible global function definition for
    ‘coordinates’
  get_bitgrid_2bits: no visible global function definition for ‘extract’
  make_cloudcount_product: no visible global function definition for
    ‘CRS’
  make_cloudcount_product: no visible global function definition for
    ‘proj4string’
  make_cloudcount_product: no visible global function definition for
    ‘extent’
  make_cloudcount_product: no visible global function definition for
    ‘coordinates<-’
  make_cloudcount_product: no visible global function definition for
    ‘SpatialPixelsDataFrame’
  make_cloudcount_product: no visible global function definition for
    ‘coordinates’
  modfns_to_ftp_download_cmd: no visible global function definition for
    ‘write.table’
  numslist_to_grd: no visible global function definition for ‘CRS’
  numslist_to_grd: no visible global function definition for
    ‘proj4string’
  numslist_to_grd: no visible global function definition for ‘extent’
  numslist_to_grd: no visible global function definition for
    ‘coordinates<-’
  numslist_to_grd: no visible global function definition for
    ‘SpatialPixelsDataFrame’
  numslist_to_grd: no visible global function definition for
    ‘coordinates’
  write_MRTSwath_param_file: no visible global function definition for
    ‘write.table’
  yearday_to_date: no visible global function definition for ‘mdy.date’
  yearday_to_date: no visible global function definition for ‘date.mdy’
  yearmonthday_to_julianday: no visible global function definition for
    ‘mdy.date’
  Undefined global functions or variables:
    CRS SpatialPixelsDataFrame coordinates coordinates<- date.mdy
    digitsBase extent extract head mdy.date proj4string raster runif
    write.table
  Consider adding
    importFrom("stats", "runif")
    importFrom("utils", "head", "write.table")
  to your NAMESPACE file.
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... NOTE
  Rd file 'check_for_matching_geolocation_files.Rd':
    \examples lines wider than 100 characters:
       # The modiscdata (MODIS c=cloud data=data) package is too big for CRAN (60 MB); so it is available on github:
       check_for_matching_geolocation_files(moddir=moddir, modtxt="MOD35_L2", geoloctxt="MOD03", return_geoloc=FALSE, return_product=FALSE)
       check_for_matching_geolocation_files(moddir=moddir, modtxt="MYD35_L2", geoloctxt="MYD03", return_geoloc=FALSE, return_product=FALSE)
  
  Rd file 'extract_fn_from_path.Rd':
    \examples lines wider than 100 characters:
       fn_with_path = "/Library/Frameworks/R.framework/Versions/2.15/Resources/library/modiscloud/extdata/2002raw/MYD35_L2.A2002185.1910.005.2 ... [TRUNCATED]
  
  Rd file 'get_bitgrid.Rd':
    \examples lines wider than 100 characters:
       # The modiscdata (MODIS c=cloud data=data) package is too big for CRAN (60 MB); so it is available on github:
  
  Rd file 'get_bitgrid_2bits.Rd':
    \examples lines wider than 100 characters:
       # The modiscdata (MODIS c=cloud data=data) package is too big for CRAN (60 MB); so it is available on github:
  
  Rd file 'modiscloud-package.Rd':
    \examples lines wider than 100 characters:
       # The modiscdata (MODIS c=cloud data=data) package is too big for CRAN (60 MB); so it is available on github:
       fns_df = check_for_matching_geolocation_files(moddir=moddir, modtxt="MYD35_L2", geoloctxt="MYD03", return_geoloc=FALSE, return_product= ... [TRUNCATED]
       # The modiscdata (MODIS c=cloud data=data) package is too big for CRAN (60 MB); so it is available on github:
               prmfn = write_MRTSwath_param_file(prmfn="tmpMRTparams.prm", tifsdir=tifsdir, modfn=fns_df$mod35_L2_fns[i], geoloc_fn=fns_df$mod ... [TRUNCATED]
               run_swath2grid(mrtpath="swath2grid", prmfn="tmpMRTparams.prm", tifsdir=tifsdir, modfn=fns_df$mod35_L2_fns[i], geoloc_fn=fns_df$ ... [TRUNCATED]
       # The modiscdata (MODIS c=cloud data=data) package is too big for CRAN (60 MB); so it is available on github:
       # The modiscdata (MODIS c=cloud data=data) package is too big for CRAN (60 MB); so it is available on github:
               # Note: Don't run the double-commented lines unless you want to collapse different bit values.
  
  Rd file 'numslist_to_grd.Rd':
    \examples lines wider than 100 characters:
       # The modiscdata (MODIS c=cloud data=data) package is too big for CRAN (60 MB); so it is available on github:
  
  Rd file 'run_swath2grid.Rd':
    \examples lines wider than 100 characters:
       # The modiscdata (MODIS c=cloud data=data) package is too big for CRAN (60 MB); so it is available on github:
               prmfn = write_MRTSwath_param_file(prmfn="tmpMRTparams.prm", tifsdir=tifsdir, modfn=fns_df$mod35_L2_fns[i], geoloc_fn=fns_df$mod ... [TRUNCATED]
               run_swath2grid(mrtpath="swath2grid", prmfn="tmpMRTparams.prm", tifsdir=tifsdir, modfn=fns_df$mod35_L2_fns[i], geoloc_fn=fns_df$ ... [TRUNCATED]
  
  Rd file 'slashslash.Rd':
    \examples lines wider than 100 characters:
       tmpstr = "/Library/Frameworks/R.framework/Versions/2.15/Resources/library/modiscloud/extdata/2002raw//MYD03.A2002185.0645.005.200919203 ... [TRUNCATED]
  
  Rd file 'write_MRTSwath_param_file.Rd':
    \examples lines wider than 100 characters:
       # The modiscdata (MODIS c=cloud data=data) package is too big for CRAN (60 MB); so it is available on github:
               prmfn = write_MRTSwath_param_file(prmfn="tmpMRTparams.prm", tifsdir=tifsdir, modfn=fns_df$mod35_L2_fns[i], geoloc_fn=fns_df$mod ... [TRUNCATED]
  
  These lines will be truncated in the PDF manual.
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... OK
• checking PDF version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 3 NOTEs