- using R Under development (unstable) (2019-12-06 r77536)
- using platform: x86_64-pc-linux-gnu (64-bit)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘modiscloud/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘modiscloud’ version ‘0.14’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘modiscloud’ can be installed ... [13s/15s] OK
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... NOTE
'library' or 'require' calls to packages already attached by Depends:
‘date’ ‘raster’ ‘rgdal’ ‘sfsmisc’
Please remove these calls from your code.
Packages in Depends field not imported from:
‘date’ ‘raster’ ‘rgdal’ ‘sfsmisc’ ‘sp’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [12s/16s] NOTE
byteint2bit: no visible global function definition for ‘digitsBase’
check_for_matching_geolocation_files: no visible global function
definition for ‘head’
extract_bit: no visible global function definition for ‘digitsBase’
fermat.test: no visible global function definition for ‘runif’
get_bitgrid: no visible global function definition for ‘raster’
get_bitgrid: no visible global function definition for ‘coordinates’
get_bitgrid: no visible global function definition for ‘extract’
get_bitgrid_2bits: no visible global function definition for ‘raster’
get_bitgrid_2bits: no visible global function definition for
‘coordinates’
get_bitgrid_2bits: no visible global function definition for ‘extract’
make_cloudcount_product: no visible global function definition for
‘CRS’
make_cloudcount_product: no visible global function definition for
‘proj4string’
make_cloudcount_product: no visible global function definition for
‘extent’
make_cloudcount_product: no visible global function definition for
‘coordinates<-’
make_cloudcount_product: no visible global function definition for
‘SpatialPixelsDataFrame’
make_cloudcount_product: no visible global function definition for
‘coordinates’
modfns_to_ftp_download_cmd: no visible global function definition for
‘write.table’
numslist_to_grd: no visible global function definition for ‘CRS’
numslist_to_grd: no visible global function definition for
‘proj4string’
numslist_to_grd: no visible global function definition for ‘extent’
numslist_to_grd: no visible global function definition for
‘coordinates<-’
numslist_to_grd: no visible global function definition for
‘SpatialPixelsDataFrame’
numslist_to_grd: no visible global function definition for
‘coordinates’
write_MRTSwath_param_file: no visible global function definition for
‘write.table’
yearday_to_date: no visible global function definition for ‘mdy.date’
yearday_to_date: no visible global function definition for ‘date.mdy’
yearmonthday_to_julianday: no visible global function definition for
‘mdy.date’
Undefined global functions or variables:
CRS SpatialPixelsDataFrame coordinates coordinates<- date.mdy
digitsBase extent extract head mdy.date proj4string raster runif
write.table
Consider adding
importFrom("stats", "runif")
importFrom("utils", "head", "write.table")
to your NAMESPACE file.
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... NOTE
Rd file 'check_for_matching_geolocation_files.Rd':
\examples lines wider than 100 characters:
# The modiscdata (MODIS c=cloud data=data) package is too big for CRAN (60 MB); so it is available on github:
check_for_matching_geolocation_files(moddir=moddir, modtxt="MOD35_L2", geoloctxt="MOD03", return_geoloc=FALSE, return_product=FALSE)
check_for_matching_geolocation_files(moddir=moddir, modtxt="MYD35_L2", geoloctxt="MYD03", return_geoloc=FALSE, return_product=FALSE)
Rd file 'extract_fn_from_path.Rd':
\examples lines wider than 100 characters:
fn_with_path = "/Library/Frameworks/R.framework/Versions/2.15/Resources/library/modiscloud/extdata/2002raw/MYD35_L2.A2002185.1910.005.2 ... [TRUNCATED]
Rd file 'get_bitgrid.Rd':
\examples lines wider than 100 characters:
# The modiscdata (MODIS c=cloud data=data) package is too big for CRAN (60 MB); so it is available on github:
Rd file 'get_bitgrid_2bits.Rd':
\examples lines wider than 100 characters:
# The modiscdata (MODIS c=cloud data=data) package is too big for CRAN (60 MB); so it is available on github:
Rd file 'modiscloud-package.Rd':
\examples lines wider than 100 characters:
# The modiscdata (MODIS c=cloud data=data) package is too big for CRAN (60 MB); so it is available on github:
fns_df = check_for_matching_geolocation_files(moddir=moddir, modtxt="MYD35_L2", geoloctxt="MYD03", return_geoloc=FALSE, return_product= ... [TRUNCATED]
# The modiscdata (MODIS c=cloud data=data) package is too big for CRAN (60 MB); so it is available on github:
prmfn = write_MRTSwath_param_file(prmfn="tmpMRTparams.prm", tifsdir=tifsdir, modfn=fns_df$mod35_L2_fns[i], geoloc_fn=fns_df$mod ... [TRUNCATED]
run_swath2grid(mrtpath="swath2grid", prmfn="tmpMRTparams.prm", tifsdir=tifsdir, modfn=fns_df$mod35_L2_fns[i], geoloc_fn=fns_df$ ... [TRUNCATED]
# The modiscdata (MODIS c=cloud data=data) package is too big for CRAN (60 MB); so it is available on github:
# The modiscdata (MODIS c=cloud data=data) package is too big for CRAN (60 MB); so it is available on github:
# Note: Don't run the double-commented lines unless you want to collapse different bit values.
Rd file 'numslist_to_grd.Rd':
\examples lines wider than 100 characters:
# The modiscdata (MODIS c=cloud data=data) package is too big for CRAN (60 MB); so it is available on github:
Rd file 'run_swath2grid.Rd':
\examples lines wider than 100 characters:
# The modiscdata (MODIS c=cloud data=data) package is too big for CRAN (60 MB); so it is available on github:
prmfn = write_MRTSwath_param_file(prmfn="tmpMRTparams.prm", tifsdir=tifsdir, modfn=fns_df$mod35_L2_fns[i], geoloc_fn=fns_df$mod ... [TRUNCATED]
run_swath2grid(mrtpath="swath2grid", prmfn="tmpMRTparams.prm", tifsdir=tifsdir, modfn=fns_df$mod35_L2_fns[i], geoloc_fn=fns_df$ ... [TRUNCATED]
Rd file 'slashslash.Rd':
\examples lines wider than 100 characters:
tmpstr = "/Library/Frameworks/R.framework/Versions/2.15/Resources/library/modiscloud/extdata/2002raw//MYD03.A2002185.0645.005.200919203 ... [TRUNCATED]
Rd file 'write_MRTSwath_param_file.Rd':
\examples lines wider than 100 characters:
# The modiscdata (MODIS c=cloud data=data) package is too big for CRAN (60 MB); so it is available on github:
prmfn = write_MRTSwath_param_file(prmfn="tmpMRTparams.prm", tifsdir=tifsdir, modfn=fns_df$mod35_L2_fns[i], geoloc_fn=fns_df$mod ... [TRUNCATED]
These lines will be truncated in the PDF manual.
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... OK
- checking PDF version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 3 NOTEs