- using R Under development (unstable) (2025-11-17 r89032)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 21.1.5
flang version 21.1.5
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘mlt.docreg/DESCRIPTION’ ... OK
- this is package ‘mlt.docreg’ version ‘1.1-11’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘mlt.docreg’ can be installed ... [21s/69s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [7s/21s] OK
- checking whether the package can be loaded with stated dependencies ... [6s/16s] OK
- checking whether the package can be unloaded cleanly ... [6s/21s] OK
- checking whether the namespace can be loaded with stated dependencies ... [6s/17s] OK
- checking whether the namespace can be unloaded cleanly ... [6s/19s] OK
- checking loading without being on the library search path ... [7s/21s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [28s/55s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in shell scripts ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... NONE
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [68s/125s] OK
Running ‘AFT-Ex.R’
Running ‘GBSG2.R’
Running ‘KM-Ex.R’
Running ‘faithful.R’ [9s/20s]
Running ‘orm-Ex.R’ [27s/49s]
Running ‘timedep_covar.R’ [9s/19s]
Running ‘truncreg-Ex.R’ [8s/13s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [148s/234s] WARNING
Error(s) in re-building vignettes:
--- re-building ‘mlt.Rnw’ using knitr
trying URL 'https://zenodo.org/record/17179/files/DVC.tgz'
Content type 'application/octet-stream' length 2292581 bytes (2.2 MB)
==================================================
downloaded 2.2 MB
Error: processing vignette 'mlt.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'mlt.tex' failed.
LaTeX errors:
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! Emergency stop.
...
l.161 \DeclareMathOperator{\Chi1}{\chi^2_1}
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘mlt.Rnw’
SUMMARY: processing the following file failed:
‘mlt.Rnw’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [8s/12s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 WARNING