• using R Under development (unstable) (2025-12-03 r89090)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 21.1.6     flang version 21.1.6
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘mlr3pipelines/DESCRIPTION’ ... OK
• this is package ‘mlr3pipelines’ version ‘0.10.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘mlr3pipelines’ can be installed ... [68s/198s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [167s/510s] OK
• checking Rd files ... [7s/20s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [109s/263s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [13m/14m] ERROR   Running ‘testthat.R’ [13m/14m] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > if (requireNamespace("testthat", quietly = TRUE)) {   + library("checkmate")   + library("testthat")   + library("mlr3")   + library("paradox")   + library("mlr3pipelines")   + test_check("mlr3pipelines")   + }   Starting 2 test processes.   > test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R:   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R:   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R:   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R:   > test_PipeOp.R: Predicting test_autotrain   > test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.   Saving _problems/test_filter_ensemble-294.R   Saving _problems/test_filter_ensemble-307.R   > test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.   > test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.   > test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-depr   > test_mlr_graphs_robustify.R: ecated").   > test_multiplicities.R:   > test_multiplicities.R:   > test_multiplicities.R: [[1]]   > test_multiplicities.R: [1] 0   > test_multiplicities.R:   > test_pipeop_blsmote.R: [1]   > test_pipeop_blsmote.R: "Borderline-SMOTE done"   > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"   > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"   > test_pipeop_blsmote.R: [1]   > test_pipeop_blsmote.R: "Borderline-SMOTE done"   > test_pipeop_isomap.R: 2025-12-03 20:30:52.178844: Isomap START   > test_pipeop_isomap.R: 2025-12-03 20:30:52.188225: constructing knn graph   > test_pipeop_isomap.R: 2025-12-03 20:30:52.241396: calculating geodesic distances   > test_pipeop_isomap.R: 2025-12-03 20:30:52.3382: Classical Scaling   > test_pipeop_isomap.R: 2025-12-03 20:30:52.63962: Isomap START   > test_pipeop_isomap.R: 2025-12-03 20:30:52.640393: constructing knn graph   > test_pipeop_isomap.R: 2025-12-03 20:30:52.673667: calculating geodesic distances   > test_pipeop_isomap.R: 2025-12-03 20:30:52.73436: Classical Scaling   > test_pipeop_isomap.R: 2025-12-03 20:30:52.852686: L-Isomap embed START   > test_pipeop_isomap.R: 2025-12-03 20:30:52.853773: constructing knn graph   > test_pipeop_isomap.R: 2025-12-03 20:30:52.93476: calculating geodesic distances   > test_pipeop_isomap.R: 2025-12-03 20:30:53.094272: embedding   > test_pipeop_isomap.R: 2025-12-03 20:30:53.09641: DONE   > test_pipeop_isomap.R: 2025-12-03 20:30:53.223601: L-Isomap embed START   > test_pipeop_isomap.R: 2025-12-03 20:30:53.232458: constructing knn graph   > test_pipeop_isomap.R: 2025-12-03 20:30:53.319694: calculating geodesic distances   > test_pipeop_isomap.R: 2025-12-03 20:30:53.494901: embedding   > test_pipeop_isomap.R: 2025-12-03 20:30:53.503531: DONE   > test_pipeop_isomap.R: 2025-12-03 20:30:53.847005: Isomap START   > test_pipeop_isomap.R: 2025-12-03 20:30:53.847743: constructing knn graph   > test_pipeop_isomap.R: 2025-12-03 20:30:53.937428: calculating geodesic distances   > test_pipeop_isomap.R: 2025-12-03 20:30:54.430068: Classical Scaling   > test_pipeop_isomap.R: 2025-12-03 20:30:54.57678: L-Isomap embed START   > test_pipeop_isomap.R: 2025-12-03 20:30:54.57794: constructing knn graph   > test_pipeop_isomap.R: 2025-12-03 20:30:54.807348: calculating geodesic distances   > test_pipeop_isomap.R: 2025-12-03 20:30:56.204557: embedding   > test_pipeop_isomap.R: 2025-12-03 20:30:56.226136: DONE   > test_pipeop_isomap.R: 2025-12-03 20:30:57.125875: Isomap START   > test_pipeop_isomap.R: 2025-12-03 20:30:57.126669: constructing knn graph   > test_pipeop_isomap.R: 2025-12-03 20:30:57.162276: calculating geodesic distances   > test_pipeop_isomap.R: 2025-12-03 20:30:57.230187: Classical Scaling   > test_pipeop_isomap.R: 2025-12-03 20:30:57.375948: L-Isomap embed START   > test_pipeop_isomap.R: 2025-12-03 20:30:57.376974: constructing knn graph   > test_pipeop_isomap.R: 2025-12-03 20:30:57.452791: calculating geodesic distances   > test_pipeop_isomap.R: 2025-12-03 20:30:57.696058: embedding   > test_pipeop_isomap.R: 2025-12-03 20:30:57.709529: DONE   > test_pipeop_isomap.R: 2025-12-03 20:30:58.093506: Isomap START   > test_pipeop_isomap.R: 2025-12-03 20:30:58.094303: constructing knn graph   > test_pipeop_isomap.R: 2025-12-03 20:30:58.113741: calculating geodesic distances   > test_pipeop_isomap.R: 2025-12-03 20:30:58.145293: Classical Scaling   > test_pipeop_isomap.R: 2025-12-03 20:30:58.236962: L-Isomap embed START   > test_pipeop_isomap.R: 2025-12-03 20:30:58.240657: constructing knn graph   > test_pipeop_isomap.R: 2025-12-03 20:30:58.34573: calculating geodesic distances   > test_pipeop_isomap.R: 2025-12-03 20:30:58.412291: embedding   > test_pipeop_isomap.R: 2025-12-03 20:30:58.416551: DONE   > test_pipeop_isomap.R: 2025-12-03 20:30:58.74213: Isomap START   > test_pipeop_isomap.R: 2025-12-03 20:30:58.742924: constructing knn graph   > test_pipeop_isomap.R: 2025-12-03 20:30:58.770496: calculating geodesic distances   > test_pipeop_isomap.R: 2025-12-03 20:30:58.850435: Classical Scaling   > test_pipeop_isomap.R: 2025-12-03 20:30:59.035268: L-Isomap embed START   > test_pipeop_isomap.R: 2025-12-03 20:30:59.038904: constructing knn graph   > test_pipeop_isomap.R: 2025-12-03 20:30:59.095923: calculating geodesic distances   > test_pipeop_isomap.R: 2025-12-03 20:30:59.262424: embedding   > test_pipeop_isomap.R: 2025-12-03 20:30:59.271001: DONE   > test_pipeop_isomap.R: 2025-12-03 20:31:00.081115: Isomap START   > test_pipeop_isomap.R: 2025-12-03 20:31:00.087914: constructing knn graph   > test_pipeop_isomap.R: 2025-12-03 20:31:00.112966: calculating geodesic distances   > test_pipeop_isomap.R: 2025-12-03 20:31:00.195289: Classical Scaling   > test_pipeop_isomap.R: 2025-12-03 20:31:00.43192: L-Isomap embed START   > test_pipeop_isomap.R: 2025-12-03 20:31:00.433025: constructing knn graph   > test_pipeop_isomap.R: 2025-12-03 20:31:00.511669: calculating geodesic distances   > test_pipeop_isomap.R: 2025-12-03 20:31:00.681612: embedding   > test_pipeop_isomap.R: 2025-12-03 20:31:00.688634: DONE   > test_pipeop_isomap.R: 2025-12-03 20:31:01.035443: Isomap START   > test_pipeop_isomap.R: 2025-12-03 20:31:01.036204: constructing knn graph   > test_pipeop_isomap.R: 2025-12-03 20:31:01.06221: calculating geodesic distances   > test_pipeop_isomap.R: 2025-12-03 20:31:01.148698: Classical Scaling   > test_pipeop_isomap.R: 2025-12-03 20:31:01.372226: L-Isomap embed START   > test_pipeop_isomap.R: 2025-12-03 20:31:01.373302: constructing knn graph   > test_pipeop_isomap.R: 2025-12-03 20:31:01.446755: calculating geodesic distances   > test_pipeop_isomap.R: 2025-12-03 20:31:01.601827: embedding   > test_pipeop_isomap.R: 2025-12-03 20:31:01.609045: DONE   > test_pipeop_isomap.R: 2025-12-03 20:31:01.889582: Isomap START   > test_pipeop_isomap.R: 2025-12-03 20:31:01.890339: constructing knn graph   > test_pipeop_isomap.R: 2025-12-03 20:31:01.978638: calculating geodesic distances   > test_pipeop_isomap.R: 2025-12-03 20:31:02.013733: Classical Scaling   > test_pipeop_isomap.R: 2025-12-03 20:31:02.193271: Isomap START   > test_pipeop_isomap.R: 2025-12-03 20:31:02.19405: constructing knn graph   > test_pipeop_isomap.R: 2025-12-03 20:31:02.224538: calculating geodesic distances   > test_pipeop_isomap.R: 2025-12-03 20:31:02.290909: Classical Scaling   > test_pipeop_isomap.R: 2025-12-03 20:31:02.374123: Isomap START   > test_pipeop_isomap.R: 2025-12-03 20:31:02.381299: constructing knn graph   > test_pipeop_isomap.R: 2025-12-03 20:31:02.410511: calculating geodesic distances   > test_pipeop_isomap.R: 2025-12-03 20:31:02.470767: Classical Scaling   > test_pipeop_nmf.R: [PipeOpNMFstate]   > test_pipeop_nmf.R: [PipeOpNMFstate]   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R:   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R:   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R:   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R:   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R:   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R:   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.   > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.   > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.   > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.   > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.   > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.   > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.   [ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]      ══ Skipped tests (100) ═════════════════════════════════════════════════════════   • On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',     'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',     'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',     'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',     'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',     'test_learner_weightedaverage.R:57:3',     'test_learner_weightedaverage.R:105:3',     'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',     'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',     'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',     'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',     'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',     'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',     'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',     'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',     'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',     'test_pipeop_datefeatures.R:10:3', 'test_pipeop_encodeimpact.R:11:3',     'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',     'test_pipeop_encodelmer.R:80:3', 'test_pipeop_encodepl.R:5:3',     'test_pipeop_encodepl.R:72:3', 'test_pipeop_featureunion.R:9:3',     'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',     'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',     'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3',     'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',     'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',     'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',     'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3',     'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_learnercv.R:31:3',     'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_mutate.R:9:3',     'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3',     'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',     'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',     'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',     'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',     'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',     'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',     'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',     'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',     'test_pipeop_smotenc.R:8:3', 'test_pipeop_nmf.R:6:3',     'test_pipeop_spatialsign.R:6:3', 'test_pipeop_targetinvert.R:4:3',     'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',     'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_subsample.R:6:3',     'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',     'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',     'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',     'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',     'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',     'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'   • Skipping (1): 'test_GraphLearner.R:1278:3'   • empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',     'test_ppl.R:61:1'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──   Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.   Differences:   `actual`: FALSE   `expected`: TRUE      ── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──   Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.   Differences:   `actual` is a character vector ('Mean relative difference: 0.9110593')   `expected` is a logical vector (TRUE)      Backtrace:       ▆    1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3    2. └─testthat::expect_true(...)      [ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [8s/14s] OK
• checking PDF version of manual ... [48s/78s] OK
• checking HTML version of manual ... [85s/127s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR