• using R Under development (unstable) (2025-11-13 r89017)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 21.1.5     flang version 21.1.5
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘metaDigitise/DESCRIPTION’ ... OK
• this is package ‘metaDigitise’ version ‘1.0.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘metaDigitise’ can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... NOTE Problems with news in ‘NEWS.md’: No news entries found.
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [11s/15s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking LazyData ... INFO   'LazyData' is specified without a 'data' directory
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... ERROR   Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output:   >   > library(testthat)   > library(metaDigitise)   > library(mockery)   >   > testthat::test_check("metaDigitise")   Saving _problems/test-calibrate_coords-13.R   Saving _problems/test-calibrate_coords-36.R   Saving _problems/test-calibrate_coords-63.R   Saving _problems/test-graph_rotation-16.R   Saving _problems/test-import_metaDigitise-112.R   Saving _problems/test-metaDigitise-24.R   Saving _problems/test-misc_func-45.R   Saving _problems/test-misc_func-58.R   Saving _problems/test-misc_func-74.R   Saving _problems/test-misc_func-89.R   Saving _problems/test-misc_func-95.R   Saving _problems/test-misc_func-115.R   Saving _problems/test-misc_func-140.R   Saving _problems/test-point_extraction-14.R   [ FAIL 14 | WARN 0 | SKIP 0 | PASS 35 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-calibrate_coords.R:6:2'): Checking cal_coords.. ────────────────   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.   ℹ Please use `with_mocked_bindings()` instead.   Backtrace:       ▆    1. └─testthat::with_mock(...) at test-calibrate_coords.R:6:9    2. └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")    3. └─lifecycle:::deprecate_stop0(msg)    4. └─rlang::cnd_signal(...)   ── Error ('test-calibrate_coords.R:29:2'): Checking getVals.. ──────────────────   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.   ℹ Please use `with_mocked_bindings()` instead.   Backtrace:       ▆    1. └─testthat::with_mock(...) at test-calibrate_coords.R:29:9    2. └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")    3. └─lifecycle:::deprecate_stop0(msg)    4. └─rlang::cnd_signal(...)   ── Error ('test-calibrate_coords.R:51:2'): Checking user_calibrate.. ───────────   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.   ℹ Please use `with_mocked_bindings()` instead.   Backtrace:       ▆    1. └─testthat::with_mock(...) at test-calibrate_coords.R:51:9    2. └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")    3. └─lifecycle:::deprecate_stop0(msg)    4. └─rlang::cnd_signal(...)   ── Error ('test-graph_rotation.R:6:2'): Checking user_rotate_graph.. ───────────   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.   ℹ Please use `with_mocked_bindings()` instead.   Backtrace:       ▆    1. └─testthat::with_mock(...) at test-graph_rotation.R:6:9    2. └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")    3. └─lifecycle:::deprecate_stop0(msg)    4. └─rlang::cnd_signal(...)   ── Error ('test-import_metaDigitise.R:107:2'): Checking import_menu works as expected.. ──   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.   ℹ Please use `with_mocked_bindings()` instead.   Backtrace:       ▆    1. └─testthat::with_mock(...) at test-import_metaDigitise.R:107:9    2. └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")    3. └─lifecycle:::deprecate_stop0(msg)    4. └─rlang::cnd_signal(...)   ── Error ('test-metaDigitise.R:21:2'): Checking specify_type works as expected.. ──   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.   ℹ Please use `with_mocked_bindings()` instead.   Backtrace:       ▆    1. └─testthat::with_mock(...) at test-metaDigitise.R:21:9    2. └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")    3. └─lifecycle:::deprecate_stop0(msg)    4. └─rlang::cnd_signal(...)   ── Error ('test-misc_func.R:42:2'): Checking user_options.. ────────────────────   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.   ℹ Please use `with_mocked_bindings()` instead.   Backtrace:       ▆    1. ├─testthat::expect_equal(...) at test-misc_func.R:42:9    2. │ └─testthat::quasi_label(enquo(object), label)    3. │ └─rlang::eval_bare(expr, quo_get_env(quo))    4. └─metaDigitise (local) user_options_tester_func("question", c("a", "b", "c"))    5. └─testthat::with_mock(readline = function(question) "a", user_options(...)) at test-misc_func.R:35:9    6. └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")    7. └─lifecycle:::deprecate_stop0(msg)    8. └─rlang::cnd_signal(...)   ── Error ('test-misc_func.R:52:2'): Checking user_unique.. ─────────────────────   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.   ℹ Please use `with_mocked_bindings()` instead.   Backtrace:       ▆    1. ├─testthat::expect_equal(...) at test-misc_func.R:52:9    2. │ └─testthat::quasi_label(enquo(object), label)    3. │ └─rlang::eval_bare(expr, quo_get_env(quo))    4. └─testthat::with_mock(...)    5. └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")    6. └─lifecycle:::deprecate_stop0(msg)    7. └─rlang::cnd_signal(...)   ── Error ('test-misc_func.R:71:2'): Checking user_numeric.. ────────────────────   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.   ℹ Please use `with_mocked_bindings()` instead.   Backtrace:       ▆    1. ├─testthat::expect_equal(...) at test-misc_func.R:71:9    2. │ └─testthat::quasi_label(enquo(object), label)    3. │ └─rlang::eval_bare(expr, quo_get_env(quo))    4. └─metaDigitise (local) user_numeric_tester_func("question", user_entry = "1")    5. └─testthat::with_mock(...) at test-misc_func.R:64:9    6. └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")    7. └─lifecycle:::deprecate_stop0(msg)    8. └─rlang::cnd_signal(...)   ── Error ('test-misc_func.R:86:2'): Checking user_count.. ──────────────────────   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.   ℹ Please use `with_mocked_bindings()` instead.   Backtrace:       ▆    1. ├─testthat::expect_equal(...) at test-misc_func.R:86:9    2. │ └─testthat::quasi_label(enquo(object), label)    3. │ └─rlang::eval_bare(expr, quo_get_env(quo))    4. └─metaDigitise (local) user_count_tester_func("question")    5. └─testthat::with_mock(readline = function(question) "1", user_count(...)) at test-misc_func.R:79:9    6. └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")    7. └─lifecycle:::deprecate_stop0(msg)    8. └─rlang::cnd_signal(...)   ── Error ('test-misc_func.R:95:1'): Checking user_base.. ───────────────────────   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.   ℹ Please use `with_mocked_bindings()` instead.   Backtrace:       ▆    1. └─testthat::with_mock(...) at test-misc_func.R:95:1    2. └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")    3. └─lifecycle:::deprecate_stop0(msg)    4. └─rlang::cnd_signal(...)   ── Error ('test-misc_func.R:112:2'): Checking ask_variable.. ───────────────────   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.   ℹ Please use `with_mocked_bindings()` instead.   Backtrace:       ▆    1. ├─testthat::expect_equal(...) at test-misc_func.R:112:9    2. │ └─testthat::quasi_label(enquo(object), label)    3. │ └─rlang::eval_bare(expr, quo_get_env(quo))    4. └─metaDigitise (local) ask_variable_tester_func(plot_type = "scatterplot")    5. └─testthat::with_mock(readline = function(question) "x", ask_variable(...)) at test-misc_func.R:105:9    6. └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")    7. └─lifecycle:::deprecate_stop0(msg)    8. └─rlang::cnd_signal(...)   ── Error ('test-misc_func.R:132:2'): Checking knownN.. ─────────────────────────   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.   ℹ Please use `with_mocked_bindings()` instead.   Backtrace:       ▆    1. └─testthat::with_mock(...) at test-misc_func.R:132:9    2. └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")    3. └─lifecycle:::deprecate_stop0(msg)    4. └─rlang::cnd_signal(...)   ── Error ('test-point_extraction.R:9:2'): Checking point_extraction.. ──────────   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.   ℹ Please use `with_mocked_bindings()` instead.   Backtrace:       ▆    1. ├─testthat::expect_equal(...) at test-point_extraction.R:17:9    2. │ └─testthat::quasi_label(enquo(object), label)    3. │ └─rlang::eval_bare(expr, quo_get_env(quo))    4. └─metaDigitise (local) point_extraction_tester_func(object = list(plot_type = "mean_error"))    5. └─testthat::with_mock(...) at test-point_extraction.R:9:9    6. └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")    7. └─lifecycle:::deprecate_stop0(msg)    8. └─rlang::cnd_signal(...)      [ FAIL 14 | WARN 0 | SKIP 0 | PASS 35 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... OK
• checking PDF version of manual ... [9s/23s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR, 1 NOTE