* installing *source* package ‘mapfit’ ...
** package ‘mapfit’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/mapfit/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c gamma.cpp -o gamma.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c phase_dist.cpp -o phase_dist.o
In file included from phase_dist.cpp:4:
In file included from ./phase_gen.h:8:
./blas.h:95:13: warning: unused variable 'n' [-Wunused-variable]
95 | const int n = traits1::ncol(A);
| ^
./blas.h:116:13: warning: unused variable 'm' [-Wunused-variable]
116 | const int m = traits1::nrow(A);
| ^
./blas.h:138:13: warning: unused variable 'm' [-Wunused-variable]
138 | const int m = traits1::nrow(A);
| ^
./blas.h:139:13: warning: unused variable 'n' [-Wunused-variable]
139 | const int n = traits1::ncol(A);
| ^
In file included from phase_dist.cpp:4:
In file included from ./phase_gen.h:9:
./unif.h:12:13: warning: unused variable 'm' [-Wunused-variable]
12 | const int m = traits1::nrow(A);
| ^
./unif.h:18:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable]
18 | int maxi = 0;
| ^
./unif.h:45:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable]
45 | int maxi = 0;
| ^
./unif.h:77:13: warning: unused variable 'm' [-Wunused-variable]
77 | const int m = traits1::nrow(A);
| ^
./unif.h:85:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable]
85 | int maxi = 0;
| ^
./unif.h:117:13: warning: unused variable 'm' [-Wunused-variable]
117 | const int m = traits1::nrow(A);
| ^
./unif.h:118:13: warning: unused variable 'n' [-Wunused-variable]
118 | const int n = traits1::ncol(A);
| ^
./unif.h:126:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable]
126 | int maxi = 0;
| ^
./unif.h:193:13: warning: unused variable 'm' [-Wunused-variable]
193 | const int m = traits1::nrow(A);
| ^
./unif.h:211:13: warning: unused variable 'n' [-Wunused-variable]
211 | const int n = traits1::ncol(A);
| ^
./unif.h:236:13: warning: unused variable 'm' [-Wunused-variable]
236 | const int m = traits1::nrow(A);
| ^
./unif.h:262:13: warning: unused variable 'm' [-Wunused-variable]
262 | const int m = traits1::nrow(A);
| ^
In file included from phase_dist.cpp:4:
./phase_gen.h:230:10: warning: unused variable 'scale' [-Wunused-variable]
230 | double scale;
| ^~~~~
./phase_gen.h:232:10: warning: unused variable 'tllf' [-Wunused-variable]
232 | double tllf = 0.0;
| ^~~~
./phase_gen.h:443:10: warning: unused variable 'scale' [-Wunused-variable]
443 | double scale;
| ^~~~~
./phase_gen.h:445:10: warning: unused variable 'tllf' [-Wunused-variable]
445 | double tllf = 0.0;
| ^~~~
20 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c emfit_phase_gen.cpp -o emfit_phase_gen.o
In file included from emfit_phase_gen.cpp:4:
In file included from ./phase_gen.h:8:
./blas.h:95:13: warning: unused variable 'n' [-Wunused-variable]
95 | const int n = traits1::ncol(A);
| ^
./blas.h:116:13: warning: unused variable 'm' [-Wunused-variable]
116 | const int m = traits1::nrow(A);
| ^
./blas.h:138:13: warning: unused variable 'm' [-Wunused-variable]
138 | const int m = traits1::nrow(A);
| ^
./blas.h:139:13: warning: unused variable 'n' [-Wunused-variable]
139 | const int n = traits1::ncol(A);
| ^
In file included from emfit_phase_gen.cpp:4:
In file included from ./phase_gen.h:9:
./unif.h:12:13: warning: unused variable 'm' [-Wunused-variable]
12 | const int m = traits1::nrow(A);
| ^
./unif.h:18:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable]
18 | int maxi = 0;
| ^
./unif.h:45:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable]
45 | int maxi = 0;
| ^
./unif.h:77:13: warning: unused variable 'm' [-Wunused-variable]
77 | const int m = traits1::nrow(A);
| ^
./unif.h:85:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable]
85 | int maxi = 0;
| ^
./unif.h:117:13: warning: unused variable 'm' [-Wunused-variable]
117 | const int m = traits1::nrow(A);
| ^
./unif.h:118:13: warning: unused variable 'n' [-Wunused-variable]
118 | const int n = traits1::ncol(A);
| ^
./unif.h:126:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable]
126 | int maxi = 0;
| ^
./unif.h:193:13: warning: unused variable 'm' [-Wunused-variable]
193 | const int m = traits1::nrow(A);
| ^
./unif.h:211:13: warning: unused variable 'n' [-Wunused-variable]
211 | const int n = traits1::ncol(A);
| ^
./unif.h:236:13: warning: unused variable 'm' [-Wunused-variable]
236 | const int m = traits1::nrow(A);
| ^
./unif.h:262:13: warning: unused variable 'm' [-Wunused-variable]
262 | const int m = traits1::nrow(A);
| ^
In file included from emfit_phase_gen.cpp:4:
./phase_gen.h:230:10: warning: unused variable 'scale' [-Wunused-variable]
230 | double scale;
| ^~~~~
./phase_gen.h:232:10: warning: unused variable 'tllf' [-Wunused-variable]
232 | double tllf = 0.0;
| ^~~~
./phase_gen.h:443:10: warning: unused variable 'scale' [-Wunused-variable]
443 | double scale;
| ^~~~~
./phase_gen.h:445:10: warning: unused variable 'tllf' [-Wunused-variable]
445 | double tllf = 0.0;
| ^~~~
20 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c emfit_phase_cf1.cpp -o emfit_phase_cf1.o
In file included from emfit_phase_cf1.cpp:4:
In file included from ./phase_cf1.h:5:
In file included from ./phase_gen.h:8:
./blas.h:95:13: warning: unused variable 'n' [-Wunused-variable]
95 | const int n = traits1::ncol(A);
| ^
./blas.h:116:13: warning: unused variable 'm' [-Wunused-variable]
116 | const int m = traits1::nrow(A);
| ^
./blas.h:138:13: warning: unused variable 'm' [-Wunused-variable]
138 | const int m = traits1::nrow(A);
| ^
./blas.h:139:13: warning: unused variable 'n' [-Wunused-variable]
139 | const int n = traits1::ncol(A);
| ^
In file included from emfit_phase_cf1.cpp:4:
In file included from ./phase_cf1.h:5:
In file included from ./phase_gen.h:9:
./unif.h:12:13: warning: unused variable 'm' [-Wunused-variable]
12 | const int m = traits1::nrow(A);
| ^
./unif.h:18:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable]
18 | int maxi = 0;
| ^
./unif.h:45:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable]
45 | int maxi = 0;
| ^
./unif.h:77:13: warning: unused variable 'm' [-Wunused-variable]
77 | const int m = traits1::nrow(A);
| ^
./unif.h:85:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable]
85 | int maxi = 0;
| ^
./unif.h:117:13: warning: unused variable 'm' [-Wunused-variable]
117 | const int m = traits1::nrow(A);
| ^
./unif.h:118:13: warning: unused variable 'n' [-Wunused-variable]
118 | const int n = traits1::ncol(A);
| ^
./unif.h:126:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable]
126 | int maxi = 0;
| ^
./unif.h:193:13: warning: unused variable 'm' [-Wunused-variable]
193 | const int m = traits1::nrow(A);
| ^
./unif.h:211:13: warning: unused variable 'n' [-Wunused-variable]
211 | const int n = traits1::ncol(A);
| ^
./unif.h:236:13: warning: unused variable 'm' [-Wunused-variable]
236 | const int m = traits1::nrow(A);
| ^
./unif.h:262:13: warning: unused variable 'm' [-Wunused-variable]
262 | const int m = traits1::nrow(A);
| ^
In file included from emfit_phase_cf1.cpp:4:
In file included from ./phase_cf1.h:5:
./phase_gen.h:230:10: warning: unused variable 'scale' [-Wunused-variable]
230 | double scale;
| ^~~~~
./phase_gen.h:232:10: warning: unused variable 'tllf' [-Wunused-variable]
232 | double tllf = 0.0;
| ^~~~
./phase_gen.h:443:10: warning: unused variable 'scale' [-Wunused-variable]
443 | double scale;
| ^~~~~
./phase_gen.h:445:10: warning: unused variable 'tllf' [-Wunused-variable]
445 | double tllf = 0.0;
| ^~~~
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c emfit_phase_herlang.cpp -o emfit_phase_herlang.o
20 warnings generated.
In file included from emfit_phase_herlang.cpp:4:
In file included from ./phase_herlang.h:7:
./blas.h:95:13: warning: unused variable 'n' [-Wunused-variable]
95 | const int n = traits1::ncol(A);
| ^
./blas.h:116:13: warning: unused variable 'm' [-Wunused-variable]
116 | const int m = traits1::nrow(A);
| ^
./blas.h:138:13: warning: unused variable 'm' [-Wunused-variable]
138 | const int m = traits1::nrow(A);
| ^
./blas.h:139:13: warning: unused variable 'n' [-Wunused-variable]
139 | const int n = traits1::ncol(A);
| ^
In file included from emfit_phase_herlang.cpp:4:
./phase_herlang.h:356:11: warning: unused variable 'alpha' [-Wunused-variable]
356 | double* alpha = trait2::value(model.alpha);
| ^~~~~
./phase_herlang.h:378:11: warning: unused variable 'alpha' [-Wunused-variable]
378 | double* alpha = trait2::value(model.alpha);
| ^~~~~
6 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c emfit_map_gen.cpp -o emfit_map_gen.o
In file included from emfit_map_gen.cpp:4:
In file included from ./map_gen.h:8:
./blas.h:95:13: warning: unused variable 'n' [-Wunused-variable]
95 | const int n = traits1::ncol(A);
| ^
./blas.h:116:13: warning: unused variable 'm' [-Wunused-variable]
116 | const int m = traits1::nrow(A);
| ^
./blas.h:138:13: warning: unused variable 'm' [-Wunused-variable]
138 | const int m = traits1::nrow(A);
| ^
./blas.h:139:13: warning: unused variable 'n' [-Wunused-variable]
139 | const int n = traits1::ncol(A);
| ^
In file included from emfit_map_gen.cpp:4:
In file included from ./map_gen.h:10:
./unif.h:12:13: warning: unused variable 'm' [-Wunused-variable]
12 | const int m = traits1::nrow(A);
| ^
./unif.h:18:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable]
18 | int maxi = 0;
| ^
./unif.h:45:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable]
45 | int maxi = 0;
| ^
./unif.h:77:13: warning: unused variable 'm' [-Wunused-variable]
77 | const int m = traits1::nrow(A);
| ^
./unif.h:85:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable]
85 | int maxi = 0;
| ^
./unif.h:117:13: warning: unused variable 'm' [-Wunused-variable]
117 | const int m = traits1::nrow(A);
| ^
./unif.h:118:13: warning: unused variable 'n' [-Wunused-variable]
118 | const int n = traits1::ncol(A);
| ^
./unif.h:126:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable]
126 | int maxi = 0;
| ^
./unif.h:193:13: warning: unused variable 'm' [-Wunused-variable]
193 | const int m = traits1::nrow(A);
| ^
./unif.h:211:13: warning: unused variable 'n' [-Wunused-variable]
211 | const int n = traits1::ncol(A);
| ^
./unif.h:236:13: warning: unused variable 'm' [-Wunused-variable]
236 | const int m = traits1::nrow(A);
| ^
./unif.h:262:13: warning: unused variable 'm' [-Wunused-variable]
262 | const int m = traits1::nrow(A);
| ^
In file included from emfit_map_gen.cpp:4:
./map_gen.h:256:17: warning: unused variable 'eb' [-Wunused-variable]
256 | const double* eb = stride_vector_traits<Ev>::value(eres.eb);
| ^~
./map_gen.h:262:11: warning: unused variable 'alpha' [-Wunused-variable]
262 | double* alpha = stride_vector_traits<Mv>::value(model.alpha);
| ^~~~~
./map_gen.h:320:11: warning: unused variable 'j' [-Wunused-variable]
320 | int j = colind1[z] - base1;
| ^
./map_gen.h:293:17: warning: unused variable 'eb' [-Wunused-variable]
293 | const double* eb = stride_vector_traits<Ev>::value(eres.eb);
| ^~
./map_gen.h:304:11: warning: unused variable 'alpha' [-Wunused-variable]
304 | double* alpha = stride_vector_traits<Mv>::value(model.alpha);
| ^~~~~
./map_gen.h:337:17: warning: unused variable 'eb' [-Wunused-variable]
337 | const double* eb = stride_vector_traits<Ev>::value(eres.eb);
| ^~
./map_gen.h:348:11: warning: unused variable 'alpha' [-Wunused-variable]
348 | double* alpha = stride_vector_traits<Mv>::value(model.alpha);
| ^~~~~
./map_gen.h:411:9: warning: unused variable 'j' [-Wunused-variable]
411 | int j = colind1[z] - base1;
| ^
./map_gen.h:381:17: warning: unused variable 'eb' [-Wunused-variable]
381 | const double* eb = stride_vector_traits<Ev>::value(eres.eb);
| ^~
./map_gen.h:394:11: warning: unused variable 'alpha' [-Wunused-variable]
394 | double* alpha = stride_vector_traits<Mv>::value(model.alpha);
| ^~~~~
26 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c emfit_map_erhmm.cpp -o emfit_map_erhmm.o
In file included from emfit_map_erhmm.cpp:4:
In file included from ./map_erhmm.h:9:
./blas.h:95:13: warning: unused variable 'n' [-Wunused-variable]
95 | const int n = traits1::ncol(A);
| ^
./blas.h:116:13: warning: unused variable 'm' [-Wunused-variable]
116 | const int m = traits1::nrow(A);
| ^
./blas.h:138:13: warning: unused variable 'm' [-Wunused-variable]
138 | const int m = traits1::nrow(A);
| ^
./blas.h:139:13: warning: unused variable 'n' [-Wunused-variable]
139 | const int n = traits1::ncol(A);
| ^
In file included from emfit_map_erhmm.cpp:4:
./map_erhmm.h:114:17: warning: unused variable 'eb' [-Wunused-variable]
114 | const double* eb = stride_vector_traits<Ev>::value(eres.eb);
| ^~
5 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c emfit_map_gmmpp.cpp -o emfit_map_gmmpp.o
In file included from emfit_map_gmmpp.cpp:4:
In file included from ./map_gmmpp.h:7:
./blas.h:95:13: warning: unused variable 'n' [-Wunused-variable]
95 | const int n = traits1::ncol(A);
| ^
./blas.h:116:13: warning: unused variable 'm' [-Wunused-variable]
116 | const int m = traits1::nrow(A);
| ^
./blas.h:138:13: warning: unused variable 'm' [-Wunused-variable]
138 | const int m = traits1::nrow(A);
| ^
./blas.h:139:13: warning: unused variable 'n' [-Wunused-variable]
139 | const int n = traits1::ncol(A);
| ^
In file included from emfit_map_gmmpp.cpp:4:
In file included from ./map_gmmpp.h:8:
./unif.h:12:13: warning: unused variable 'm' [-Wunused-variable]
12 | const int m = traits1::nrow(A);
| ^
./unif.h:18:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable]
18 | int maxi = 0;
| ^
./unif.h:45:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable]
45 | int maxi = 0;
| ^
./unif.h:77:13: warning: unused variable 'm' [-Wunused-variable]
77 | const int m = traits1::nrow(A);
| ^
./unif.h:85:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable]
85 | int maxi = 0;
| ^
./unif.h:117:13: warning: unused variable 'm' [-Wunused-variable]
117 | const int m = traits1::nrow(A);
| ^
./unif.h:118:13: warning: unused variable 'n' [-Wunused-variable]
118 | const int n = traits1::ncol(A);
| ^
./unif.h:126:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable]
126 | int maxi = 0;
| ^
./unif.h:193:13: warning: unused variable 'm' [-Wunused-variable]
193 | const int m = traits1::nrow(A);
| ^
./unif.h:211:13: warning: unused variable 'n' [-Wunused-variable]
211 | const int n = traits1::ncol(A);
| ^
./unif.h:236:13: warning: unused variable 'm' [-Wunused-variable]
236 | const int m = traits1::nrow(A);
| ^
./unif.h:262:13: warning: unused variable 'm' [-Wunused-variable]
262 | const int m = traits1::nrow(A);
| ^
In file included from emfit_map_gmmpp.cpp:4:
In file included from ./map_gmmpp.h:12:
./map_gen.h:256:17: warning: unused variable 'eb' [-Wunused-variable]
256 | const double* eb = stride_vector_traits<Ev>::value(eres.eb);
| ^~
./map_gen.h:262:11: warning: unused variable 'alpha' [-Wunused-variable]
262 | double* alpha = stride_vector_traits<Mv>::value(model.alpha);
| ^~~~~
./map_gen.h:320:11: warning: unused variable 'j' [-Wunused-variable]
320 | int j = colind1[z] - base1;
| ^
./map_gen.h:293:17: warning: unused variable 'eb' [-Wunused-variable]
293 | const double* eb = stride_vector_traits<Ev>::value(eres.eb);
| ^~
./map_gen.h:304:11: warning: unused variable 'alpha' [-Wunused-variable]
304 | double* alpha = stride_vector_traits<Mv>::value(model.alpha);
| ^~~~~
./map_gen.h:337:17: warning: unused variable 'eb' [-Wunused-variable]
337 | const double* eb = stride_vector_traits<Ev>::value(eres.eb);
| ^~
./map_gen.h:348:11: warning: unused variable 'alpha' [-Wunused-variable]
348 | double* alpha = stride_vector_traits<Mv>::value(model.alpha);
| ^~~~~
./map_gen.h:411:9: warning: unused variable 'j' [-Wunused-variable]
411 | int j = colind1[z] - base1;
| ^
./map_gen.h:381:17: warning: unused variable 'eb' [-Wunused-variable]
381 | const double* eb = stride_vector_traits<Ev>::value(eres.eb);
| ^~
./map_gen.h:394:11: warning: unused variable 'alpha' [-Wunused-variable]
394 | double* alpha = stride_vector_traits<Mv>::value(model.alpha);
| ^~~~~
In file included from emfit_map_gmmpp.cpp:4:
./map_gmmpp.h:56:15: warning: variable 'dji' set but not used [-Wunused-but-set-variable]
56 | double dij, dji;
| ^
./map_gmmpp.h:174:16: warning: unused variable 'tmax' [-Wunused-variable]
174 | const double tmax = data.maxtime;
| ^~~~
emfit_map_gmmpp.cpp:63:8: warning: unused variable 'm' [-Wunused-variable]
63 | auto m = tdat.length();
| ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c gth.cpp -o gth.o
29 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o
In file included from gth.cpp:4:
In file included from ./gth.h:6:
./blas.h:95:13: warning: unused variable 'n' [-Wunused-variable]
95 | const int n = traits1::ncol(A);
| ^
./blas.h:116:13: warning: unused variable 'm' [-Wunused-variable]
116 | const int m = traits1::nrow(A);
| ^
./blas.h:138:13: warning: unused variable 'm' [-Wunused-variable]
138 | const int m = traits1::nrow(A);
| ^
./blas.h:139:13: warning: unused variable 'n' [-Wunused-variable]
139 | const int n = traits1::ncol(A);
| ^
4 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o mapfit.so gamma.o phase_dist.o emfit_phase_gen.o emfit_phase_cf1.o emfit_phase_herlang.o emfit_map_gen.o emfit_map_erhmm.o emfit_map_gmmpp.o gth.o RcppExports.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/mapfit/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/mapfit/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/mapfit/src'
installing to /data/gannet/ripley/R/packages/tests-clang/mapfit.Rcheck/00LOCK-mapfit/00new/mapfit/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mapfit)