* installing *source* package ‘longitree’ ...
** this is package ‘longitree’ version ‘1.0.0’
** package ‘longitree’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 22.1.2 (https://github.com/llvm/llvm-project 1ab49a973e210e97d61e5db6557180dcb92c3e98)’
using Fortran compiler: ‘flang version 22.1.2 (https://github.com/llvm/llvm-project 1ab49a973e210e97d61e5db6557180dcb92c3e98)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/longitree/src'
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang22/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c init.c -o init.o
flang-22  -fpic  -O2 -pedantic  -c  longitree_program.f90 -o longitree_program.o
./longitree_program.f90:771:20: warning: Value of local variable 'i' is never used [-Wunused-variable]
  	integer count, j, i
  	                  ^
./longitree_program.f90:819:10: warning: Value of local variable 'count' is never used [-Wunused-variable]
  	integer count, i, j, k
  	        ^^^^^
./longitree_program.f90:819:17: warning: Value of local variable 'i' is never used [-Wunused-variable]
  	integer count, i, j, k
  	               ^
./longitree_program.f90:857:43: warning: Value of local variable 'sortsample' is never used [-Wunused-variable]
  	double precision datasample(samplesize), sortsample(samplesize)
  	                                         ^^^^^^^^^^
./longitree_program.f90:858:13: warning: Value of local variable 'j' is never used [-Wunused-variable]
  	integer i, j, count, facsum
  	           ^
./longitree_program.f90:858:16: warning: Value of local variable 'count' is never used [-Wunused-variable]
  	integer i, j, count, facsum
  	              ^^^^^
./longitree_program.f90:876:14: warning: Value of local variable 'splitindmat1' is never used [-Wunused-variable]
  	integer i,j,splitindmat1(splitnum,2), count_0, count_1, idx
  	            ^^^^^^^^^^^^
./longitree_program.f90:1093:22: warning: Value of local variable 'yb' is never used [-Wunused-variable]
      double precision yb,res,err,ft,h,s0,xt,wt,t,as,shk,mba,pba,seps
                       ^^
./longitree_program.f90:1093:25: warning: Value of local variable 'res' is never used [-Wunused-variable]
      double precision yb,res,err,ft,h,s0,xt,wt,t,as,shk,mba,pba,seps
                          ^^^
./longitree_program.f90:1485:21: warning: Value of local variable 'ii' is never used [-Wunused-variable]
  	real(8) randvalsub,ii
  	                   ^^
./longitree_program.f90:1551:48: warning: Value of local variable 'dfvec' is never used [-Wunused-variable]
  	integer splitnum(colnum-3),countvec(colnum-3),dfvec(5)
  	                                              ^^^^^
./longitree_program.f90:2405:34: warning: Value of local variable 'sortsample' is never used [-Wunused-variable]
  	real(8) datasample(samplesize), sortsample(samplesize)
  	                                ^^^^^^^^^^
./longitree_program.f90:2406:13: warning: Value of local variable 'j' is never used [-Wunused-variable]
  	integer i, j, count, facsum
  	           ^
./longitree_program.f90:2406:16: warning: Value of local variable 'count' is never used [-Wunused-variable]
  	integer i, j, count, facsum
  	              ^^^^^
./longitree_program.f90:2425:20: warning: Value of local variable 'i' is never used [-Wunused-variable]
  	integer count, j, i
  	                  ^
./longitree_program.f90:2492:14: warning: Value of local variable 'splitindmat1' is never used [-Wunused-variable]
  	integer i,j,splitindmat1(splitnum,2), count_0, count_1, idx
  	            ^^^^^^^^^^^^
./longitree_program.f90:2771:13: warning: Value of local variable 'yb' is never used [-Wunused-variable]
      real(8) yb,res,err,ft,h,s0,xt,wt,t,as,shk,mba,pba,seps
              ^^
./longitree_program.f90:2771:16: warning: Value of local variable 'res' is never used [-Wunused-variable]
      real(8) yb,res,err,ft,h,s0,xt,wt,t,as,shk,mba,pba,seps
                 ^^^
./longitree_program.f90:2891:10: warning: Value of local variable 'count' is never used [-Wunused-variable]
  	integer count, i, j, k
  	        ^^^^^
./longitree_program.f90:2891:17: warning: Value of local variable 'i' is never used [-Wunused-variable]
  	integer count, i, j, k
  	               ^
./longitree_program.f90:3703:14: warning: Value of local variable 'hierarchy' is never used [-Wunused-variable]
  	integer i,j,hierarchy,nodesize,facsum,count_0,count_1,idx,splitnum,countvec
  	            ^^^^^^^^^
./longitree_program.f90:3703:24: warning: Value of local variable 'nodesize' is never used [-Wunused-variable]
  	integer i,j,hierarchy,nodesize,facsum,count_0,count_1,idx,splitnum,countvec
  	                      ^^^^^^^^
./longitree_program.f90:3703:33: warning: Value of local variable 'facsum' is never used [-Wunused-variable]
  	integer i,j,hierarchy,nodesize,facsum,count_0,count_1,idx,splitnum,countvec
  	                               ^^^^^^
./longitree_program.f90:3703:69: warning: Value of local variable 'countvec' is never used [-Wunused-variable]
  	integer i,j,hierarchy,nodesize,facsum,count_0,count_1,idx,splitnum,countvec
  	                                                                   ^^^^^^^^
./longitree_program.f90:3752:10: warning: Value of local variable 'count' is never used [-Wunused-variable]
  	integer count, i, j, k
  	        ^^^^^
./longitree_program.f90:3752:17: warning: Value of local variable 'i' is never used [-Wunused-variable]
  	integer count, i, j, k
  	               ^
./longitree_program.f90:3770:20: warning: Value of local variable 'i' is never used [-Wunused-variable]
  	integer count, j, i
  	                  ^
./longitree_program.f90:3849:20: warning: Value of local variable 'i' is never used [-Wunused-variable]
  	integer count, j, i
  	                  ^
./longitree_program.f90:4411:43: warning: Value of local variable 'sortsample' is never used [-Wunused-variable]
  	double precision datasample(samplesize), sortsample(samplesize)
  	                                         ^^^^^^^^^^
./longitree_program.f90:4412:13: warning: Value of local variable 'j' is never used [-Wunused-variable]
  	integer i, j, count, facsum
  	           ^
./longitree_program.f90:4412:16: warning: Value of local variable 'count' is never used [-Wunused-variable]
  	integer i, j, count, facsum
  	              ^^^^^
./longitree_program.f90:4431:20: warning: Value of local variable 'i' is never used [-Wunused-variable]
  	integer count, j, i
  	                  ^
./longitree_program.f90:4478:14: warning: Value of local variable 'splitindmat1' is never used [-Wunused-variable]
  	integer i,j,splitindmat1(splitnum,2), count_0, count_1, idx
  	            ^^^^^^^^^^^^
./longitree_program.f90:4694:22: warning: Value of local variable 'yb' is never used [-Wunused-variable]
      double precision yb,res,err,ft,h,s0,xt,wt,t,as,shk,mba,pba,seps
                       ^^
./longitree_program.f90:4694:25: warning: Value of local variable 'res' is never used [-Wunused-variable]
      double precision yb,res,err,ft,h,s0,xt,wt,t,as,shk,mba,pba,seps
                          ^^^
./longitree_program.f90:4805:10: warning: Value of local variable 'count' is never used [-Wunused-variable]
  	integer count, i, j, k
  	        ^^^^^
./longitree_program.f90:4805:17: warning: Value of local variable 'i' is never used [-Wunused-variable]
  	integer count, i, j, k
  	               ^
./longitree_program.f90:5015:64: warning: Value of local variable 'prunenodenummattest' is never used [-Wunused-variable]
  	integer, allocatable ::  nodenummat(:,:), nodenummattest(:,:),prunenodenummattest(:,:)
  	                                                              ^^^^^^^^^^^^^^^^^^^
./longitree_program.f90:5075:30: warning: Value of local variable 'ii' is never used [-Wunused-variable]
  	double precision randvalsub,ii
  	                            ^^
./longitree_program.f90:5650:43: warning: Value of local variable 'sortsample' is never used [-Wunused-variable]
  	double precision datasample(samplesize), sortsample(samplesize)
  	                                         ^^^^^^^^^^
./longitree_program.f90:5651:13: warning: Value of local variable 'j' is never used [-Wunused-variable]
  	integer i, j, count, facsum
  	           ^
./longitree_program.f90:5651:16: warning: Value of local variable 'count' is never used [-Wunused-variable]
  	integer i, j, count, facsum
  	              ^^^^^
./longitree_program.f90:5670:20: warning: Value of local variable 'i' is never used [-Wunused-variable]
  	integer count, j, i
  	                  ^
./longitree_program.f90:5717:14: warning: Value of local variable 'splitindmat1' is never used [-Wunused-variable]
  	integer i,j,splitindmat1(splitnum,2), count_0, count_1, idx
  	            ^^^^^^^^^^^^
./longitree_program.f90:5933:22: warning: Value of local variable 'yb' is never used [-Wunused-variable]
      double precision yb,res,err,ft,h,s0,xt,wt,t,as,shk,mba,pba,seps
                       ^^
./longitree_program.f90:5933:25: warning: Value of local variable 'res' is never used [-Wunused-variable]
      double precision yb,res,err,ft,h,s0,xt,wt,t,as,shk,mba,pba,seps
                          ^^^
./longitree_program.f90:6044:10: warning: Value of local variable 'count' is never used [-Wunused-variable]
  	integer count, i, j, k
  	        ^^^^^
./longitree_program.f90:6044:17: warning: Value of local variable 'i' is never used [-Wunused-variable]
  	integer count, i, j, k
  	               ^
./longitree_program.f90:6678:10: warning: Value of local variable 'tndatacount' is never used [-Wunused-variable]
  	integer tndatacount((2**maxdepth)-1)
  	        ^^^^^^^^^^^
./longitree_program.f90:6936:20: warning: Value of local variable 'i' is never used [-Wunused-variable]
  	integer count, j, i
  	                  ^
./longitree_program.f90:6984:10: warning: Value of local variable 'count' is never used [-Wunused-variable]
  	integer count, i, j, k
  	        ^^^^^
./longitree_program.f90:6984:17: warning: Value of local variable 'i' is never used [-Wunused-variable]
  	integer count, i, j, k
  	               ^
./longitree_program.f90:7426:20: warning: Value of local variable 'i' is never used [-Wunused-variable]
  	integer count, j, i
  	                  ^
./longitree_program.f90:7474:10: warning: Value of local variable 'count' is never used [-Wunused-variable]
  	integer count, i, j, k
  	        ^^^^^
./longitree_program.f90:7474:17: warning: Value of local variable 'i' is never used [-Wunused-variable]
  	integer count, i, j, k
  	               ^
./longitree_program.f90:7492:43: warning: Value of local variable 'sortsample' is never used [-Wunused-variable]
  	double precision datasample(samplesize), sortsample(samplesize)
  	                                         ^^^^^^^^^^
./longitree_program.f90:7493:13: warning: Value of local variable 'j' is never used [-Wunused-variable]
  	integer i, j, count, facsum
  	           ^
./longitree_program.f90:7493:16: warning: Value of local variable 'count' is never used [-Wunused-variable]
  	integer i, j, count, facsum
  	              ^^^^^
./longitree_program.f90:7511:14: warning: Value of local variable 'splitindmat1' is never used [-Wunused-variable]
  	integer i,j,splitindmat1(splitnum,2), count_0, count_1, idx
  	            ^^^^^^^^^^^^
./longitree_program.f90:7727:22: warning: Value of local variable 'yb' is never used [-Wunused-variable]
      double precision yb,res,err,ft,h,s0,xt,wt,t,as,shk,mba,pba,seps
                       ^^
./longitree_program.f90:7727:25: warning: Value of local variable 'res' is never used [-Wunused-variable]
      double precision yb,res,err,ft,h,s0,xt,wt,t,as,shk,mba,pba,seps
                          ^^^
./longitree_program.f90:8036:83: warning: Value of uninitialized local variable 'meangammar2cv' is used but never defined [-Wused-undefined-variable]
  	double precision, allocatable :: meangammacv1(:),meangammacv2(:),meangammacv3(:),meangammar2cv(:)
  	                                                                                 ^^^^^^^^^^^^^
./longitree_program.f90:8039:64: warning: Value of uninitialized local variable 'gammar2cvmat' is used but never defined [-Wused-undefined-variable]
  	testdata1(:,:),testdata2(:,:),testdata3(:,:),testdataall(:,:),gammar2cvmat(:,:)
  	                                                              ^^^^^^^^^^^^
./longitree_program.f90:8041:38: warning: Value of local variable 'bfsize' is never used [-Wunused-variable]
  	prunind2,prunind3,i,testdataallsize,bfsize,afsize
  	                                    ^^^^^^
./longitree_program.f90:8041:45: warning: Value of local variable 'afsize' is never used [-Wunused-variable]
  	prunind2,prunind3,i,testdataallsize,bfsize,afsize
  	                                           ^^^^^^
./longitree_program.f90:8045:26: warning: Value of local variable 'gammar2cv' is never used [-Wunused-variable]
  	r2cvvalvecthree(ksplit),gammar2cv((2**(maxdepth-1))-1)
  	                        ^^^^^^^^^
./longitree_program.f90:8266:30: warning: Value of local variable 'ii' is never used [-Wunused-variable]
  	double precision randvalsub,ii
  	                            ^^
./longitree_program.f90:8845:43: warning: Value of local variable 'sortsample' is never used [-Wunused-variable]
  	double precision datasample(samplesize), sortsample(samplesize)
  	                                         ^^^^^^^^^^
./longitree_program.f90:8846:13: warning: Value of local variable 'j' is never used [-Wunused-variable]
  	integer i, j, count, facsum
  	           ^
./longitree_program.f90:8846:16: warning: Value of local variable 'count' is never used [-Wunused-variable]
  	integer i, j, count, facsum
  	              ^^^^^
./longitree_program.f90:8865:20: warning: Value of local variable 'i' is never used [-Wunused-variable]
  	integer count, j, i
  	                  ^
./longitree_program.f90:8912:14: warning: Value of local variable 'splitindmat1' is never used [-Wunused-variable]
  	integer i,j,splitindmat1(splitnum,2), count_0, count_1, idx
  	            ^^^^^^^^^^^^
./longitree_program.f90:9128:22: warning: Value of local variable 'yb' is never used [-Wunused-variable]
      double precision yb,res,err,ft,h,s0,xt,wt,t,as,shk,mba,pba,seps
                       ^^
./longitree_program.f90:9128:25: warning: Value of local variable 'res' is never used [-Wunused-variable]
      double precision yb,res,err,ft,h,s0,xt,wt,t,as,shk,mba,pba,seps
                          ^^^
./longitree_program.f90:9239:10: warning: Value of local variable 'count' is never used [-Wunused-variable]
  	integer count, i, j, k
  	        ^^^^^
./longitree_program.f90:9239:17: warning: Value of local variable 'i' is never used [-Wunused-variable]
  	integer count, i, j, k
  	               ^
./longitree_program.f90:10277:14: warning: Value of local variable 'hierarchy' is never used [-Wunused-variable]
  	integer i,j,hierarchy,nodesize,facsum,count_0,count_1,idx,splitnum,countvec
  	            ^^^^^^^^^
./longitree_program.f90:10277:24: warning: Value of local variable 'nodesize' is never used [-Wunused-variable]
  	integer i,j,hierarchy,nodesize,facsum,count_0,count_1,idx,splitnum,countvec
  	                      ^^^^^^^^
./longitree_program.f90:10277:33: warning: Value of local variable 'facsum' is never used [-Wunused-variable]
  	integer i,j,hierarchy,nodesize,facsum,count_0,count_1,idx,splitnum,countvec
  	                               ^^^^^^
./longitree_program.f90:10277:69: warning: Value of local variable 'countvec' is never used [-Wunused-variable]
  	integer i,j,hierarchy,nodesize,facsum,count_0,count_1,idx,splitnum,countvec
  	                                                                   ^^^^^^^^
./longitree_program.f90:10326:10: warning: Value of local variable 'count' is never used [-Wunused-variable]
  	integer count, i, j, k
  	        ^^^^^
./longitree_program.f90:10326:17: warning: Value of local variable 'i' is never used [-Wunused-variable]
  	integer count, i, j, k
  	               ^
./longitree_program.f90:10344:20: warning: Value of local variable 'i' is never used [-Wunused-variable]
  	integer count, j, i
  	                  ^
clang-22 -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o longitree.so init.o longitree_program.o -lflang_rt.runtime -lm -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/longitree/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/longitree/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/longitree/src'
installing to /data/gannet/ripley/R/packages/tests-clang/longitree.Rcheck/00LOCK-longitree/00new/longitree/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (longitree)