* installing *source* package ‘libdeflate’ ... ** this is package ‘libdeflate’ version ‘1.24-7’ ** package ‘libdeflate’ successfully unpacked and MD5 sums checked ** using staged installation ** preparing to configure package 'libdeflate' ... *** configure: system libdeflate may exist, checking to see if valid location loading initial cache file ../build/initial-cache.cmake -- The C compiler identification is Clang 20.1.8 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/bin/clang-20 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAVE_WDECLARATION_AFTER_STATEMENT -- Performing Test HAVE_WDECLARATION_AFTER_STATEMENT - Success -- Performing Test HAVE_WIMPLICIT_FALLTHROUGH -- Performing Test HAVE_WIMPLICIT_FALLTHROUGH - Success -- Performing Test HAVE_WMISSING_FIELD_INITIALIZERS -- Performing Test HAVE_WMISSING_FIELD_INITIALIZERS - Success -- Performing Test HAVE_WMISSING_PROTOTYPES -- Performing Test HAVE_WMISSING_PROTOTYPES - Success -- Performing Test HAVE_WPEDANTIC -- Performing Test HAVE_WPEDANTIC - Success -- Performing Test HAVE_WSHADOW -- Performing Test HAVE_WSHADOW - Success -- Performing Test HAVE_WSTRICT_PROTOTYPES -- Performing Test HAVE_WSTRICT_PROTOTYPES - Success -- Performing Test HAVE_WUNDEF -- Performing Test HAVE_WUNDEF - Success -- Performing Test HAVE_WVLA -- Performing Test HAVE_WVLA - Success -- Configuring done (4.7s) -- Generating done (0.0s) -- Build files have been written to: /data/gannet/ripley/R/packages/tests-clang/libdeflate/src/libdeflate/build *** configured file: 'src/Makevars.in' => 'src/Makevars' *** configured file: 'src/Makevars.in' => 'src/Makevars' *** configured file: 'src/Makevars.win.in' => 'src/Makevars.win' ** finished configure for package 'libdeflate' ** libs using C compiler: ‘clang version 20.1.8’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/libdeflate/src' ==> Building bundled libdeflate for linking and downstream packages that build and link bundled static libraries that use CMake cd /data/gannet/ripley/R/packages/tests-clang/libdeflate/src/libdeflate/build && \ /usr/bin/cmake --build . --config Release && \ /usr/bin/cmake --install . --config Release && \ cd /data/gannet/ripley/R/packages/tests-clang/libdeflate && \ "/data/gannet/ripley/R/R-clang/bin/Rscript" tools/fix-line-endings.R src/Makevars \ src/libdeflate/build/Makefile && \ "/data/gannet/ripley/R/R-clang/bin/Rscript" tools/fix-targets.R \ inst/lib/x86_64/cmake/libdeflate/libdeflate-targets.cmake gmake[2]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/libdeflate/src/libdeflate/build' [ 8%] Building C object CMakeFiles/libdeflate_static.dir/lib/arm/cpu_features.c.o [ 16%] Building C object CMakeFiles/libdeflate_static.dir/lib/utils.c.o [ 25%] Building C object CMakeFiles/libdeflate_static.dir/lib/x86/cpu_features.c.o [ 33%] Building C object CMakeFiles/libdeflate_static.dir/lib/deflate_compress.c.o [ 41%] Building C object CMakeFiles/libdeflate_static.dir/lib/deflate_decompress.c.o [ 50%] Building C object CMakeFiles/libdeflate_static.dir/lib/adler32.c.o [ 58%] Building C object CMakeFiles/libdeflate_static.dir/lib/zlib_compress.c.o [ 66%] Building C object CMakeFiles/libdeflate_static.dir/lib/zlib_decompress.c.o [ 75%] Building C object CMakeFiles/libdeflate_static.dir/lib/crc32.c.o [ 83%] Building C object CMakeFiles/libdeflate_static.dir/lib/gzip_compress.c.o [ 91%] Building C object CMakeFiles/libdeflate_static.dir/lib/gzip_decompress.c.o [100%] Linking C static library libdeflate.a [100%] Built target libdeflate_static gmake[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/libdeflate/src/libdeflate/build' -- Installing: /data/gannet/ripley/R/packages/tests-clang/libdeflate/inst/lib/x86_64/libdeflate.a -- Up-to-date: /data/gannet/ripley/R/packages/tests-clang/libdeflate/inst/include/libdeflate.h -- Installing: /data/gannet/ripley/R/packages/tests-clang/libdeflate/inst/lib/x86_64/pkgconfig/libdeflate.pc -- Installing: /data/gannet/ripley/R/packages/tests-clang/libdeflate/inst/lib/x86_64/cmake/libdeflate/libdeflate-targets.cmake -- Installing: /data/gannet/ripley/R/packages/tests-clang/libdeflate/inst/lib/x86_64/cmake/libdeflate/libdeflate-targets-release.cmake -- Installing: /data/gannet/ripley/R/packages/tests-clang/libdeflate/inst/lib/x86_64/cmake/libdeflate/libdeflate-config.cmake -- Installing: /data/gannet/ripley/R/packages/tests-clang/libdeflate/inst/lib/x86_64/cmake/libdeflate/libdeflate-config-version.cmake clang-20 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/packages/tests-clang/libdeflate/include" -I"/data/gannet/ripley/R/packages/tests-clang/libdeflate/inst/include" -isystem /usr/local/clang20/include -I/usr/local/clang/include -I"/data/gannet/ripley/R/packages/tests-clang/libdeflate/include" -I"/data/gannet/ripley/R/packages/tests-clang/libdeflate/inst/include" -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c r-api.c -o r-api.o clang-20 -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o libdeflate.so r-api.o -L/data/gannet/ripley/R/packages/tests-clang/libdeflate/inst/lib/x86_64/ -ldeflate make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/libdeflate/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/libdeflate/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/libdeflate/src' installing to /data/gannet/ripley/R/packages/tests-clang/libdeflate.Rcheck/00LOCK-libdeflate/00new/libdeflate/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (libdeflate)