Install log for 'junctions'

* installing *source* package ‘junctions’ ...
** this is package ‘junctions’ version ‘2.1.4’
** package ‘junctions’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘clang version 23.1.0’
using C++17
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/junctions/src'
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/nloptr/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c Fish.cpp -o Fish.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/nloptr/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c Output.cpp -o Output.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/nloptr/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/nloptr/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c backcrossing.cpp -o backcrossing.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/nloptr/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c estimate_time_unphased.cpp -o estimate_time_unphased.o
In file included from estimate_time_unphased.cpp:19:
In file included from ./tbb_stub.h:15:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:23:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/detail/_task.h:89:13: warning: unused function template 'suspend_callback' [-Wunused-template]
   89 | static void suspend_callback(void* user_callback, suspend_point sp) {
      |             ^~~~~~~~~~~~~~~~
In file included from estimate_time_unphased.cpp:19:
In file included from ./tbb_stub.h:15:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:27:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/partitioner.h:47:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/task_group.h:130:15: warning: unused function template 'task_ptr_or_nullptr' [-Wunused-template]
  130 |     d1::task* task_ptr_or_nullptr(F&& f){
      |               ^~~~~~~~~~~~~~~~~~~
2 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/nloptr/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c main_functions.cpp -o main_functions.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/nloptr/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c unphased.cpp -o unphased.o
In file included from unphased.cpp:19:
In file included from ./tbb_stub.h:15:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:23:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/detail/_task.h:89:13: warning: unused function template 'suspend_callback' [-Wunused-template]
   89 | static void suspend_callback(void* user_callback, suspend_point sp) {
      |             ^~~~~~~~~~~~~~~~
In file included from unphased.cpp:19:
In file included from ./tbb_stub.h:15:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:27:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/partitioner.h:47:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/task_group.h:130:15: warning: unused function template 'task_ptr_or_nullptr' [-Wunused-template]
  130 |     d1::task* task_ptr_or_nullptr(F&& f){
      |               ^~~~~~~~~~~~~~~~~~~
2 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang23/lib -L/usr/local/clang23/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o junctions.so Fish.o Output.o RcppExports.o backcrossing.o estimate_time_unphased.o main_functions.o unphased.o
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/junctions/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/junctions/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/junctions/src'
installing to /data/localhost/ripley/R/packages/tests-clang/junctions.Rcheck/00LOCK-junctions/00new/junctions/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (junctions)