• using R Under development (unstable) (2026-04-23 r89954)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 22.1.4 (https://github.com/llvm/llvm-project 35990504507d79e0b9deb809c8ee5e1b34ceef20)     flang version 22.1.4 (https://github.com/llvm/llvm-project 35990504507d79e0b9deb809c8ee5e1b34ceef20)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8 * current time: 2026-04-23 19:01:36 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘ivolcano/DESCRIPTION’ ... OK
• this is package ‘ivolcano’ version ‘0.0.5’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘ivolcano’ can be installed ... [15s/33s] OK See the install log for details.
• checking installed package size ... INFO   installed size is 41.7Mb   sub-directories of 1Mb or more:     doc 40.6Mb     extdata 1.0Mb
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s/13s] OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... [3s/10s] OK
• checking whether the namespace can be loaded with stated dependencies ... [4s/11s] OK
• checking whether the namespace can be unloaded cleanly ... [4s/10s] OK
• checking loading without being on the library search path ... [4s/12s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [20s/56s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [15s/44s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [9m/34m] ERROR Error(s) in re-building vignettes: --- re-building ‘ivolcano.qmd’ using html  [31m processing file: ivolcano.qmd  [39m [31moutput file: ivolcano.knit.md  [39m [1mpandoc [22m   to: html   output-file: ivolcano.html   standalone: true   embed-resources: true   wrap: none   default-image-extension: png   css:     - >-       /data/gannet/ripley/R/test-clang/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css   variables: {}     [1mmetadata [22m   document-css: false   lang: en   engines:     - path: /data/gannet/ripley/Sources/quarto-1.9.36/share/extension-subtrees/julia-engine/_extensions/julia-engine/julia-engine.js   minimal: true   theme: none   title: Interactive Volcano Plot   author: |-     Guangchuang Yu\     School of Basic Medical Sciences, Southern Medical University   date: '`r Sys.Date()`'   vignette: |     %\VignetteIndexEntry{ivolcano introduction} %\VignetteEngine{quarto::html} %\VignetteEncoding{UTF-8}   fontsize: 1.1em   linestretch: 1.7    Error: processing vignette 'ivolcano.qmd' failed with diagnostics: ! Error running quarto CLI from R. Caused by error: ! Could not parse cli `{}` expression: `ivolcano introducti…`. Caused by error: ! <text>:1:10: unexpected symbol 1: ivolcano introduction              ^ --- failed re-building ‘ivolcano.qmd’ SUMMARY: processing the following file failed:   ‘ivolcano.qmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [7s/43s] OK
• checking HTML version of manual ... [0m/12m] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR