• using R Under development (unstable) (2026-04-23 r89960)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 22.1.4 (https://github.com/llvm/llvm-project 35990504507d79e0b9deb809c8ee5e1b34ceef20)     flang version 22.1.4 (https://github.com/llvm/llvm-project 35990504507d79e0b9deb809c8ee5e1b34ceef20)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8 * current time: 2026-04-26 07:32:55 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘inlabru/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘inlabru’ version ‘2.14.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘inlabru’ can be installed ... [58s/84s] OK See the install log for details.
• used C++ compiler: ‘clang version 22.1.4 (https://github.com/llvm/llvm-project 35990504507d79e0b9deb809c8ee5e1b34ceef20)’
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [85s/119s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [55s/85s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [178s/154s] ERROR   Running ‘testthat.R’ [178s/153s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > if (require(testthat, quietly = TRUE)) {   + test_check("inlabru")   + }   Loading required package: inlabru   Loading required package: fmesher   Starting 2 test processes.   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   Saving _problems/test-component-407.R   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   Saving _problems/test-data-76.R   > test-environment.R: Test message 1   > test-environment.R: Test message 2   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_   > test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_   > test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_   > test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_   > test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   Saving _problems/test-aggregate-309.R   > test-mdata.R: OMP: Warning #96: Cannot form a team with 4 threads, using 2 instead.   > test-mdata.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_   > test-mdata.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-mdata.R: OMP: Warning #96: Cannot form a team with 4 threads, using 2 instead.   > test-mdata.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_   > test-mdata.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-mdata.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-mdata.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_   > test-mdata.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-mdata.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-mdata.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_   > test-mdata.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-mdata.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-mdata.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   > test-mdata.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.   > test-mdata.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_   > test-mdata.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   [ FAIL 3 | WARN 0 | SKIP 56 | PASS 176 ]      ══ Skipped tests (56) ══════════════════════════════════════════════════════════   • On CRAN (55): 'test-01_lgcp_2d.R:2:3', 'test-01_lgcp_2d.R:140:3',     'test-additive.R:2:3', 'test-02_predict.R:2:3', 'test-02_predict.R:128:3',     'test-bru_sf.R:4:3', 'test-component.R:226:3', 'test-component.R:294:3',     'test-component.R:322:3', 'test-component.R:361:3', 'test-component.R:417:3',     'test-copy.R:2:3', 'test-copy.R:126:3', 'test-copy.R:188:3',     'test-data.R:5:3', 'test-data.R:87:3', 'test-fmesher_pixels.R:2:3',     'test-globe_mesh.R:2:3', 'test-globe_mesh.R:62:3', 'test-latent_ar1.R:75:3',     'test-latent_clinear.R:2:3', 'test-latent_factor.R:2:3',     'test-latent_factor.R:103:3', 'test-latent_linear.R:2:3',     'test-latent_linear.R:34:3', 'test-latent_fixed_effects.R:2:3',     'test-latent_fixed_effects.R:24:3', 'test-latent_fixed_effects.R:50:3',     'test-latent_fixed_effects.R:71:3', 'test-latent_fixed_effects.R:98:3',     'test-latent_rw2.R:2:3', 'test-latent_rw2.R:32:3',     'test-latent_spde_1d.R:31:3', 'test-latent_spde_2d.R:2:3',     'test-latent_spde_2d.R:97:3', 'test-lgcp_1d.R:28:3', 'test-lgcp_1d.R:105:3',     'test-lgcp_1d.R:156:3', 'test-lgcp_1d_nonlinear.R:2:3',     'test-lgcp_1d_nonlinear.R:169:3', 'test-lgcp_2d_covars.R:2:3',     'test-lgcp_2d_plotsample.R:2:3', 'test-linearisation.R:2:3',     'test-mapper.R:435:3', 'test-mapper.R:449:3', 'test-mapper.R:505:3',     'test-mapper.R:611:3', 'test-mapper.R:753:3', 'test-mapper.R:781:3',     'test-multi_like.R:2:3', 'test-multi_like.R:55:3', 'test-offset.R:2:3',     'test-response_size.R:2:3', 'test-response_size.R:82:3', 'test-utils.R:2:3'   • {stars} is not installed (1): 'test-eval_spatial.R:153:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-component.R:407:7'): Component construction: unsafe intercepts ──   Error in `sort.int(x, na.last = na.last, decreasing = decreasing, ...)`: 'x' must be atomic   Backtrace:        ▆     1. ├─testthat::expect_error(...) at test-component.R:405:3     2. │ └─testthat:::expect_condition_matching_(...)     3. │ └─testthat:::quasi_capture(...)     4. │ ├─testthat (local) .capture(...)     5. │ │ └─base::withCallingHandlers(...)     6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     7. └─inlabru::bru_model(cmp, bru_obs_list(list(lik))) at test-component.R:407:7     8. ├─inlabru::bru_comp_list(...)     9. └─inlabru:::bru_comp_list.bru_comp_list(...)    10. ├─inlabru::bru_comp_list(list(object), .envir = .envir, ...)    11. └─inlabru:::bru_comp_list.list(list(object), .envir = .envir, ...)    12. ├─inlabru::add_mappers(object, lhoods = lhoods, inputs = inputs)    13. └─inlabru:::add_mappers.bru_comp_list(...)    14. ├─inlabru::add_mappers(...)    15. └─inlabru:::add_mappers.bru_comp(...)    16. └─inlabru:::add_mapper(...)    17. └─inlabru:::make_unique_inputs(inp_, allow_list = TRUE)    18. └─inlabru:::make_unique_inputs(inp_, allow_list = FALSE)    19. ├─base::sort(unique(unlist(inp)), na.last = NA)    20. └─base::sort.default(unique(unlist(inp)), na.last = NA)    21. └─base::sort.int(...)   ── Error ('test-data.R:76:7'): Component construction: unsafe intercepts, data is list ──   Error in `sort.int(x, na.last = na.last, decreasing = decreasing, ...)`: 'x' must be atomic   Backtrace:        ▆     1. ├─testthat::expect_error(...) at test-data.R:74:3     2. │ └─testthat:::expect_condition_matching_(...)     3. │ └─testthat:::quasi_capture(...)     4. │ ├─testthat (local) .capture(...)     5. │ │ └─base::withCallingHandlers(...)     6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     7. └─inlabru::bru_model(cmp, bru_obs_list(list(lik))) at test-data.R:76:7     8. ├─inlabru::bru_comp_list(...)     9. └─inlabru:::bru_comp_list.bru_comp_list(...)    10. ├─inlabru::bru_comp_list(list(object), .envir = .envir, ...)    11. └─inlabru:::bru_comp_list.list(list(object), .envir = .envir, ...)    12. ├─inlabru::add_mappers(object, lhoods = lhoods, inputs = inputs)    13. └─inlabru:::add_mappers.bru_comp_list(...)    14. ├─inlabru::add_mappers(...)    15. └─inlabru:::add_mappers.bru_comp(...)    16. └─inlabru:::add_mapper(...)    17. └─inlabru:::make_unique_inputs(inp_, allow_list = TRUE)    18. └─inlabru:::make_unique_inputs(inp_, allow_list = FALSE)    19. ├─base::sort(unique(unlist(inp)), na.last = NA)    20. └─base::sort.default(unique(unlist(inp)), na.last = NA)    21. └─base::sort.int(...)   ── Error ('test-aggregate.R:290:7'): Aggregated Gaussian observations, using domain/samplers feature ──   Error in `sort.int(x, na.last = na.last, decreasing = decreasing, ...)`: 'x' must be atomic   Backtrace:        ▆     1. ├─testthat::expect_error(...) at test-aggregate.R:288:3     2. │ └─testthat:::expect_condition_matching_(...)     3. │ └─testthat:::quasi_capture(...)     4. │ ├─testthat (local) .capture(...)     5. │ │ └─base::withCallingHandlers(...)     6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     7. └─inlabru::bru_model(...) at test-aggregate.R:290:7     8. ├─inlabru::bru_comp_list(...)     9. └─inlabru:::bru_comp_list.bru_comp_list(...)    10. ├─inlabru::bru_comp_list(list(object), .envir = .envir, ...)    11. └─inlabru:::bru_comp_list.list(list(object), .envir = .envir, ...)    12. ├─inlabru::add_mappers(object, lhoods = lhoods, inputs = inputs)    13. └─inlabru:::add_mappers.bru_comp_list(...)    14. ├─inlabru::add_mappers(...)    15. └─inlabru:::add_mappers.bru_comp(...)    16. └─inlabru:::add_mapper(...)    17. └─inlabru:::make_unique_inputs(inp_, allow_list = TRUE)    18. └─inlabru:::make_unique_inputs(inp_, allow_list = FALSE)    19. ├─base::sort(unique(unlist(inp)), na.last = NA)    20. └─base::sort.default(unique(unlist(inp)), na.last = NA)    21. └─base::sort.int(...)      [ FAIL 3 | WARN 0 | SKIP 56 | PASS 176 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [156s/227s] OK
• checking PDF version of manual ... [23s/32s] OK
• checking HTML version of manual ... [34s/46s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR