* installing *source* package ‘influenceR’ ...
** package ‘influenceR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/influenceR/src'
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c bridging.c -o bridging.o
bridging.c:332:13: warning: variable 'start' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
332 | if (tid == 0) {
| ^~~~~~~~
bridging.c:369:16: note: uninitialized use occurs here
369 | while (start[phase_num+1] - start[phase_num] > 0) {
| ^~~~~
bridging.c:332:9: note: remove the 'if' if its condition is always true
332 | if (tid == 0) {
| ^~~~~~~~~~~~~
bridging.c:279:16: note: initialize the variable 'start' to silence this warning
279 | long *start;
| ^
| = NULL
bridging.c:354:13: warning: variable 'phase_num' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
354 | if (tid == 0) {
| ^~~~~~~~
bridging.c:369:22: note: uninitialized use occurs here
369 | while (start[phase_num+1] - start[phase_num] > 0) {
| ^~~~~~~~~
bridging.c:354:9: note: remove the 'if' if its condition is always true
354 | if (tid == 0) {
| ^~~~~~~~~~~~~
bridging.c:289:19: note: initialize the variable 'phase_num' to silence this warning
289 | long phase_num, numPhases;
| ^
| = 0
2 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c keyplayer-utils.c -o keyplayer-utils.o
keyplayer-utils.c:348:13: warning: variable 'start' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
348 | if (tid == 0) {
| ^~~~~~~~
keyplayer-utils.c:385:16: note: uninitialized use occurs here
385 | while (start[phase_num+1] - start[phase_num] > 0) {
| ^~~~~
keyplayer-utils.c:348:9: note: remove the 'if' if its condition is always true
348 | if (tid == 0) {
| ^~~~~~~~~~~~~
keyplayer-utils.c:295:16: note: initialize the variable 'start' to silence this warning
295 | long *start;
| ^
| = NULL
keyplayer-utils.c:370:13: warning: variable 'phase_num' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
370 | if (tid == 0) {
| ^~~~~~~~
keyplayer-utils.c:385:22: note: uninitialized use occurs here
385 | while (start[phase_num+1] - start[phase_num] > 0) {
| ^~~~~~~~~
keyplayer-utils.c:370:9: note: remove the 'if' if its condition is always true
370 | if (tid == 0) {
| ^~~~~~~~~~~~~
keyplayer-utils.c:305:19: note: initialize the variable 'phase_num' to silence this warning
305 | long phase_num, numPhases;
| ^
| = 0
2 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c keyplayer.c -o keyplayer.o
keyplayer.c:30:7: warning: unused variable 'np' [-Wunused-variable]
30 | int np, rank, new_rank = 0, stop;
| ^~
keyplayer.c:30:11: warning: unused variable 'rank' [-Wunused-variable]
30 | int np, rank, new_rank = 0, stop;
| ^~~~
keyplayer.c:30:17: warning: unused variable 'new_rank' [-Wunused-variable]
30 | int np, rank, new_rank = 0, stop;
| ^~~~~~~~
keyplayer.c:30:31: warning: unused variable 'stop' [-Wunused-variable]
30 | int np, rank, new_rank = 0, stop;
| ^~~~
keyplayer.c:32:11: warning: unused variable 'fits' [-Wunused-variable]
32 | double *fits;
| ^~~~
keyplayer.c:33:8: warning: unused variable 'allsets' [-Wunused-variable]
33 | int *allsets;
| ^~~~~~~
keyplayer.c:103:9: warning: variable 'allsets' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
103 | if (rank == 0) {
| ^~~~~~~~~
keyplayer.c:115:14: note: uninitialized use occurs here
115 | int *s = &allsets[rank * n];
| ^~~~~~~
keyplayer.c:103:5: note: remove the 'if' if its condition is always true
103 | if (rank == 0) {
| ^~~~~~~~~~~~~~
keyplayer.c:89:15: note: initialize the variable 'allsets' to silence this warning
89 | int *allsets;
| ^
| = NULL
keyplayer.c:103:9: warning: variable 'fits' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
103 | if (rank == 0) {
| ^~~~~~~~~
keyplayer.c:119:19: note: uninitialized use occurs here
119 | double *fit = &fits[rank];
| ^~~~
keyplayer.c:103:5: note: remove the 'if' if its condition is always true
103 | if (rank == 0) {
| ^~~~~~~~~~~~~~
keyplayer.c:88:15: note: initialize the variable 'fits' to silence this warning
88 | double *fits;
| ^
| = NULL
8 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c packagename_init.c -o packagename_init.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c prefix_sums.c -o prefix_sums.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c process_sparse.c -o process_sparse.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c snap_wrapper.c -o snap_wrapper.o
snap_wrapper.c:194:7: warning: unused variable 'r' [-Wunused-variable]
194 | int r = read_graph_from_edgelist(&G, E, n, m);
| ^
snap_wrapper.c:219:5: warning: unused variable 'mpi' [-Wunused-variable]
219 | mpi = INTEGER(sMPI)[0]; // use mpi?
| ^~~
snap_wrapper.c:223:7: warning: unused variable 'r' [-Wunused-variable]
223 | int r = read_graph_from_edgelist(&G, E, n, m);
| ^
3 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vertex_betweenness_centrality.c -o vertex_betweenness_centrality.o
vertex_betweenness_centrality.c:33:9: warning: 'fprintf' macro redefined [-Wmacro-redefined]
33 | #define fprintf(a, ...) REprintf(__VA_ARGS__)
| ^
/usr/include/bits/stdio2.h:91:11: note: previous definition is here
91 | # define fprintf(stream, ...) \
| ^
vertex_betweenness_centrality.c:81:14: warning: variable 'stream' set but not used [-Wunused-but-set-variable]
81 | int* stream;
| ^
vertex_betweenness_centrality.c:66:9: warning: unused variable 'seed' [-Wunused-variable]
66 | int seed = 2387;
| ^~~~
vertex_betweenness_centrality.c:543:14: warning: variable 'stream' set but not used [-Wunused-but-set-variable]
543 | int* stream;
| ^
vertex_betweenness_centrality.c:549:13: warning: unused variable 'myLock' [-Wunused-variable]
549 | int myLock;
| ^~~~~~
vertex_betweenness_centrality.c:514:10: warning: unused variable 'chunkSize' [-Wunused-variable]
514 | long chunkSize;
| ^~~~~~~~~
vertex_betweenness_centrality.c:519:9: warning: unused variable 'seed' [-Wunused-variable]
519 | int seed = 2387;
| ^~~~
7 warnings generated.
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o influenceR.so bridging.o keyplayer-utils.o keyplayer.o packagename_init.o prefix_sums.o process_sparse.o snap_wrapper.o vertex_betweenness_centrality.o -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/influenceR/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/influenceR/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/influenceR/src'
installing to /data/gannet/ripley/R/packages/tests-clang/influenceR.Rcheck/00LOCK-influenceR/00new/influenceR/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (influenceR)