* installing *source* package ‘hdf5lib’ ... ** this is package ‘hdf5lib’ version ‘2.1.1.0’ ** package ‘hdf5lib’ successfully unpacked and MD5 sums checked ** using staged installation --- [hdf5lib] Starting Configuration (Static) --- c_build: clang-22 -std=gnu23 -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -Wno-gnu-zero-variadic-macro-arguments -fpic -DNDEBUG -I../lib "$@" -isystem /usr/local/clang22/include -I/usr/local/clang/include --- [hdf5lib] Extracting source tarballs... --- [hdf5lib] Building Shared Libs... c_build -o find_byte_widths find_byte_widths.c ./find_byte_widths | tr -d '\r' > H5_byte_widths.h c_build -c r_compat.c -o r_compat.o c_build -I../hdf5/src -I../blosc1/blosc -I../blosc2/include -c hdf5lib.c -o hdf5lib.o --- [hdf5lib] Building SNAPPY (csnappy)... SNAPPY_FLAGS: -I. -Wno-constant-logical-operand c_build $SNAPPY_FLAGS -c csnappy_compress.c -o snappy_csnappy_compress.o c_build $SNAPPY_FLAGS -c csnappy_decompress.c -o snappy_csnappy_decompress.o --- [hdf5lib] Building GZIP (zlib-ng)... ./configure --zlib-compat --static --without-gzfileops Checking for compiler... clang-22 -std=gnu23 Checking for Symbol versioning... No. Building static library libz.a version 1.3.1.zlib-ng with clang-22 -std=gnu23. Checking for -Werror=unguarded-availability... Yes. Checking for -Werror=unguarded-availability-new... Yes. Checking for -Werror=unused-command-line-argument... Yes. Checking for off64_t... Yes. Checking for fseeko... Yes. Checking for GNU style __cpuid... Yes. Checking for MS style __cpuid... No. Checking for strerror... Yes. Checking for getauxval() or elf_aux_info() in sys/auxv.h... Yes. Checking for unistd.h... Yes. Checking for linux/auxvec.h... Yes. Checking for ptrdiff_t... Yes. Checking for ANSI C compliant compiler... Yes. Checking for -fno-semantic-interposition... Yes. Checking for -fno-lto... Yes. Checking for attribute(visibility(hidden)) support... Yes. Checking for attribute(visibility(internal)) support... Yes. Checking for attribute(aligned) ... Yes. Checking for __builtin_assume_aligned() ... Yes. Checking for __builtin_ctz ... Yes. Checking for __builtin_ctzll ... Yes. Checking for XSAVE intrinsics ... Yes. Checking for SSE2 intrinsics ... Yes. Checking for SSSE3 intrinsics ... Yes. Checking for SSE4.1 intrinsics ... Yes. Checking for SSE4.2 intrinsics ... Yes. Checking for PCLMULQDQ intrinsics ... Yes. Checking for AVX2 intrinsics ... Yes. Checking for AVX512 intrinsics ... Yes. Check whether -mtune=cascadelake works ... Yes. Checking for AVX512VNNI intrinsics ... Yes. Checking for VPCLMULQDQ intrinsics ... Yes. Uname: Linux ARCH: x86_64 Using arch directory: arch/x86 Architecture-specific static object files: x86_features.o chunkset_sse2.o chorba_sse2.o compare256_sse2.o slide_hash_sse2.o adler32_ssse3.o chunkset_ssse3.o chorba_sse41.o adler32_sse42.o crc32_pclmulqdq.o slide_hash_avx2.o chunkset_avx2.o compare256_avx2.o adler32_avx2.o adler32_avx512.o chunkset_avx512.o compare256_avx512.o adler32_avx512_vnni.o crc32_vpclmulqdq.o Architecture-specific shared object files: x86_features.lo chunkset_sse2.lo chorba_sse2.lo compare256_sse2.lo slide_hash_sse2.lo adler32_ssse3.lo chunkset_ssse3.lo chorba_sse41.lo adler32_sse42.lo crc32_pclmulqdq.lo slide_hash_avx2.lo chunkset_avx2.lo compare256_avx2.lo adler32_avx2.lo adler32_avx512.lo chunkset_avx512.lo compare256_avx512.lo adler32_avx512_vnni.lo crc32_vpclmulqdq.lo make libz.a >/dev/null --- [hdf5lib] Building LZ4... LZ4_FLAGS: -Wno-constant-logical-operand c_build $LZ4_FLAGS -c lz4.c -o lz4_lz4.o c_build $LZ4_FLAGS -c lz4hc.c -o lz4_lz4hc.o --- [hdf5lib] Building ZFP... ZFP_FLAGS: -Iinclude -DBIT_STREAM_WORD_TYPE=uint8 c_build $ZFP_FLAGS -c src/bitstream.c -o zfp_bitstream.o c_build $ZFP_FLAGS -c src/decode1d.c -o zfp_decode1d.o c_build $ZFP_FLAGS -c src/decode1f.c -o zfp_decode1f.o c_build $ZFP_FLAGS -c src/decode1i.c -o zfp_decode1i.o c_build $ZFP_FLAGS -c src/decode1l.c -o zfp_decode1l.o c_build $ZFP_FLAGS -c src/decode2d.c -o zfp_decode2d.o c_build $ZFP_FLAGS -c src/decode2f.c -o zfp_decode2f.o c_build $ZFP_FLAGS -c src/decode2i.c -o zfp_decode2i.o c_build $ZFP_FLAGS -c src/decode2l.c -o zfp_decode2l.o c_build $ZFP_FLAGS -c src/decode3d.c -o zfp_decode3d.o c_build $ZFP_FLAGS -c src/decode3f.c -o zfp_decode3f.o c_build $ZFP_FLAGS -c src/decode3i.c -o zfp_decode3i.o c_build $ZFP_FLAGS -c src/decode3l.c -o zfp_decode3l.o c_build $ZFP_FLAGS -c src/decode4d.c -o zfp_decode4d.o c_build $ZFP_FLAGS -c src/decode4f.c -o zfp_decode4f.o c_build $ZFP_FLAGS -c src/decode4i.c -o zfp_decode4i.o c_build $ZFP_FLAGS -c src/decode4l.c -o zfp_decode4l.o c_build $ZFP_FLAGS -c src/encode1d.c -o zfp_encode1d.o c_build $ZFP_FLAGS -c src/encode1f.c -o zfp_encode1f.o c_build $ZFP_FLAGS -c src/encode1i.c -o zfp_encode1i.o c_build $ZFP_FLAGS -c src/encode1l.c -o zfp_encode1l.o c_build $ZFP_FLAGS -c src/encode2d.c -o zfp_encode2d.o c_build $ZFP_FLAGS -c src/encode2f.c -o zfp_encode2f.o c_build $ZFP_FLAGS -c src/encode2i.c -o zfp_encode2i.o c_build $ZFP_FLAGS -c src/encode2l.c -o zfp_encode2l.o c_build $ZFP_FLAGS -c src/encode3d.c -o zfp_encode3d.o c_build $ZFP_FLAGS -c src/encode3f.c -o zfp_encode3f.o c_build $ZFP_FLAGS -c src/encode3i.c -o zfp_encode3i.o c_build $ZFP_FLAGS -c src/encode3l.c -o zfp_encode3l.o c_build $ZFP_FLAGS -c src/encode4d.c -o zfp_encode4d.o c_build $ZFP_FLAGS -c src/encode4f.c -o zfp_encode4f.o c_build $ZFP_FLAGS -c src/encode4i.c -o zfp_encode4i.o c_build $ZFP_FLAGS -c src/encode4l.c -o zfp_encode4l.o c_build $ZFP_FLAGS -c src/zfp.c -o zfp_zfp.o --- [hdf5lib] Building ZSTD... ZSTD_FLAGS: -I. -DZSTD_LIB_MINIFY=1 -DZSTD_LIB_DICTBUILDER=1 -DZSTD_LIB_DEPRECATED=0 -DZSTD_LEGACY_SUPPORT=0 -DZSTD_DISABLE_ASM -DZSTD_MULTITHREAD -pthread -D_GNU_SOURCE -D_DARWIN_C_SOURCE c_build $ZSTD_FLAGS -c common/debug.c -o zstd_debug.o c_build $ZSTD_FLAGS -c common/entropy_common.c -o zstd_entropy_common.o c_build $ZSTD_FLAGS -c common/error_private.c -o zstd_error_private.o c_build $ZSTD_FLAGS -c common/fse_decompress.c -o zstd_fse_decompress.o c_build $ZSTD_FLAGS -c common/pool.c -o zstd_pool.o c_build $ZSTD_FLAGS -c common/threading.c -o zstd_threading.o c_build $ZSTD_FLAGS -c common/xxhash.c -o zstd_xxhash.o c_build $ZSTD_FLAGS -c common/zstd_common.c -o zstd_zstd_common.o c_build $ZSTD_FLAGS -c compress/fse_compress.c -o zstd_fse_compress.o c_build $ZSTD_FLAGS -c compress/hist.c -o zstd_hist.o c_build $ZSTD_FLAGS -c compress/huf_compress.c -o zstd_huf_compress.o c_build $ZSTD_FLAGS -c compress/zstd_compress.c -o zstd_zstd_compress.o c_build $ZSTD_FLAGS -c compress/zstd_compress_literals.c -o zstd_zstd_compress_literals.o c_build $ZSTD_FLAGS -c compress/zstd_compress_sequences.c -o zstd_zstd_compress_sequences.o c_build $ZSTD_FLAGS -c compress/zstd_compress_superblock.c -o zstd_zstd_compress_superblock.o c_build $ZSTD_FLAGS -c compress/zstd_double_fast.c -o zstd_zstd_double_fast.o c_build $ZSTD_FLAGS -c compress/zstd_fast.c -o zstd_zstd_fast.o c_build $ZSTD_FLAGS -c compress/zstd_lazy.c -o zstd_zstd_lazy.o c_build $ZSTD_FLAGS -c compress/zstd_ldm.c -o zstd_zstd_ldm.o c_build $ZSTD_FLAGS -c compress/zstd_opt.c -o zstd_zstd_opt.o c_build $ZSTD_FLAGS -c compress/zstd_preSplit.c -o zstd_zstd_preSplit.o c_build $ZSTD_FLAGS -c compress/zstdmt_compress.c -o zstd_zstdmt_compress.o c_build $ZSTD_FLAGS -c decompress/huf_decompress.c -o zstd_huf_decompress.o c_build $ZSTD_FLAGS -c decompress/zstd_ddict.c -o zstd_zstd_ddict.o c_build $ZSTD_FLAGS -c decompress/zstd_decompress.c -o zstd_zstd_decompress.o c_build $ZSTD_FLAGS -c decompress/zstd_decompress_block.c -o zstd_zstd_decompress_block.o c_build $ZSTD_FLAGS -c dictBuilder/cover.c -o zstd_cover.o c_build $ZSTD_FLAGS -c dictBuilder/divsufsort.c -o zstd_divsufsort.o c_build $ZSTD_FLAGS -c dictBuilder/fastcover.c -o zstd_fastcover.o c_build $ZSTD_FLAGS -c dictBuilder/zdict.c -o zstd_zdict.o --- [hdf5lib] Building BLOSC1... BLOSC1_FLAGS: -Iblosc -I../hdf5/src -I../lz4 -I../zstd -I../gzip -I../snappy -I../zfp -DHAVE_LZ4 -DHAVE_SNAPPY -DHAVE_ZLIB -DHAVE_ZSTD -DBLOSC_STRICT_ALIGN -Wno-unused-variable -Wno-pedantic -Wno-deprecated-declarations -Wno-unused-but-set-variable -Wno-unused-function -Wno-attributes -Dget_run_16=blosc1_get_run_16 -Dget_match=blosc1_get_match -Dblosclz_compress=blosc1_blosclz_compress -Dblosclz_decompress=blosc1_blosclz_decompress -Dfastcopy=blosc1_fastcopy -Dcopy_match=blosc1_copy_match c_build $BLOSC1_FLAGS -c blosc/bitshuffle-generic.c -o blosc1_bitshuffle-generic.o c_build $BLOSC1_FLAGS -c blosc/blosc.c -o blosc1_blosc.o c_build $BLOSC1_FLAGS -c blosc/blosclz.c -o blosc1_blosclz.o c_build $BLOSC1_FLAGS -c blosc/fastcopy.c -o blosc1_fastcopy.o c_build $BLOSC1_FLAGS -c blosc/shuffle-generic.c -o blosc1_shuffle-generic.o c_build $BLOSC1_FLAGS -c blosc/shuffle.c -o blosc1_shuffle.o --- [hdf5lib] Building BLOSC2... BLOSC2_FLAGS: -Iinclude -Iblosc -I../lz4 -I../zstd -I../gzip -I../zfp -DHAVE_ZSTD -DHAVE_ZLIB -DBLOSC_STRICT_ALIGN -DBIT_STREAM_WORD_TYPE=uint8 -Wno-unused-variable -Wno-pedantic -Wno-deprecated-declarations -Wno-unused-but-set-variable -Wno-unused-function -Wno-attributes c_build $BLOSC2_FLAGS -c blosc/b2nd.c -o blosc2_b2nd.o c_build $BLOSC2_FLAGS -c blosc/b2nd_utils.c -o blosc2_b2nd_utils.o c_build $BLOSC2_FLAGS -c blosc/bitshuffle-generic.c -o blosc2_bitshuffle-generic.o c_build $BLOSC2_FLAGS -c blosc/blosc2-stdio.c -o blosc2_blosc2-stdio.o c_build $BLOSC2_FLAGS -c blosc/blosc2.c -o blosc2_blosc2.o c_build $BLOSC2_FLAGS -c blosc/blosclz.c -o blosc2_blosclz.o c_build $BLOSC2_FLAGS -c blosc/delta.c -o blosc2_delta.o c_build $BLOSC2_FLAGS -c blosc/directories.c -o blosc2_directories.o c_build $BLOSC2_FLAGS -c blosc/fastcopy.c -o blosc2_fastcopy.o c_build $BLOSC2_FLAGS -c blosc/frame.c -o blosc2_frame.o c_build $BLOSC2_FLAGS -c blosc/schunk.c -o blosc2_schunk.o c_build $BLOSC2_FLAGS -c blosc/sframe.c -o blosc2_sframe.o c_build $BLOSC2_FLAGS -c blosc/shuffle-generic.c -o blosc2_shuffle-generic.o c_build $BLOSC2_FLAGS -c blosc/shuffle.c -o blosc2_shuffle.o c_build $BLOSC2_FLAGS -c blosc/stune.c -o blosc2_stune.o c_build $BLOSC2_FLAGS -c blosc/timestamp.c -o blosc2_timestamp.o c_build $BLOSC2_FLAGS -c blosc/trunc-prec.c -o blosc2_trunc-prec.o c_build $BLOSC2_FLAGS -c plugins/codecs/ndlz/ndlz.c -o blosc2_ndlz.o c_build $BLOSC2_FLAGS -c plugins/codecs/ndlz/ndlz4x4.c -o blosc2_ndlz4x4.o c_build $BLOSC2_FLAGS -c plugins/codecs/ndlz/ndlz8x8.c -o blosc2_ndlz8x8.o c_build $BLOSC2_FLAGS -c plugins/codecs/ndlz/xxhash.c -o blosc2_xxhash.o c_build $BLOSC2_FLAGS -c plugins/codecs/zfp/blosc2-zfp.c -o blosc2_blosc2-zfp.o c_build $BLOSC2_FLAGS -c ../../src/config/blosc2/blosc2_ndlz_codec.c -o blosc2_blosc2_ndlz_codec.o c_build $BLOSC2_FLAGS -c ../../src/config/blosc2/blosc2_zfp_codec.c -o blosc2_blosc2_zfp_codec.o --- [hdf5lib] Building BZIP2... c_build -c blocksort.c -o bzip2_blocksort.o c_build -c bzlib.c -o bzip2_bzlib.o c_build -c compress.c -o bzip2_compress.o c_build -c crctable.c -o bzip2_crctable.o c_build -c decompress.c -o bzip2_decompress.o c_build -c huffman.c -o bzip2_huffman.o c_build -c randtable.c -o bzip2_randtable.o --- [hdf5lib] Building LZF... LZF_FLAGS: -DLZF_STATE_ARG=1 -DSTRICT_ALIGN=1 c_build $LZF_FLAGS -c lzf_c.c -o lzf_lzf_c.o c_build $LZF_FLAGS -c lzf_d.c -o lzf_lzf_d.o --- [hdf5lib] Building SZIP (libaec)... c_build -I. -c src/decode.c -o szip_decode.o c_build -I. -c src/encode.c -o szip_encode.o c_build -I. -c src/encode_accessors.c -o szip_encode_accessors.o c_build -I. -c src/sz_compat.c -o szip_sz_compat.o c_build -I. -c src/vector.c -o szip_vector.o --- [hdf5lib] Building BITSHUFFLE... BSHUF_FLAGS: -DZSTD_SUPPORT=1 -I../lz4 -I../zstd -Wno-pointer-sign -Dbshuf_copy=bshuf_copy_standalone -Dbshuf_trans_bitrow_eight=bshuf_trans_bitrow_eight_standalone -Dbshuf_trans_byte_elem_remainder=bshuf_trans_byte_elem_remainder_standalone -Dbshuf_trans_bit_byte_remainder=bshuf_trans_bit_byte_remainder_standalone -Dbshuf_trans_elem=bshuf_trans_elem_standalone -Dbshuf_trans_byte_bitrow_scal=bshuf_trans_byte_bitrow_scal_standalone -Dbshuf_shuffle_bit_eightelem_scal=bshuf_shuffle_bit_eightelem_scal_standalone -Dbshuf_untrans_bit_elem_scal=bshuf_untrans_bit_elem_scal_standalone -Dbshuf_trans_bit_elem_scal=bshuf_trans_bit_elem_scal_standalone -Dbshuf_trans_byte_elem_scal=bshuf_trans_byte_elem_scal_standalone -Dbshuf_trans_bit_byte_scal=bshuf_trans_bit_byte_scal_standalone c_build $BSHUF_FLAGS -c bitshuffle.c -o bshuf_bitshuffle.o c_build $BSHUF_FLAGS -c bitshuffle_core.c -o bshuf_bitshuffle_core.o c_build $BSHUF_FLAGS -c iochain.c -o bshuf_iochain.o --- [hdf5lib] Building Plugins... PLUGIN_FLAGS: -I../hdf5/src -D__USE_MINGW_ANSI_STDIO=1 c_build -I../blosc1 $PLUGIN_FLAGS -c blosc1_plugin.c -o blosc1_plugin.o c_build -I../blosc2 $PLUGIN_FLAGS -c blosc2_plugin.c -o blosc2_plugin.o c_build -I../bshuf $PLUGIN_FLAGS -c bshuf_plugin.c -o bshuf_plugin.o c_build -I../bzip2 $PLUGIN_FLAGS -c bzip2_plugin.c -o bzip2_plugin.o c_build -I../lz4 $PLUGIN_FLAGS -c lz4_plugin.c -o lz4_plugin.o c_build -I../lzf $PLUGIN_FLAGS -c lzf_plugin.c -o lzf_plugin.o c_build -I../noop $PLUGIN_FLAGS -c noop_plugin.c -o noop_plugin.o c_build -I../snappy $PLUGIN_FLAGS -c snappy_plugin.c -o snappy_plugin.o c_build -I../zfp $PLUGIN_FLAGS -c zfp_plugin.c -o zfp_plugin.o c_build -I../zstd $PLUGIN_FLAGS -c zstd_plugin.c -o zstd_plugin.o --- [hdf5lib] Building HDF5... HDF5_FLAGS: -DH5_BUILT_AS_STATIC_LIB -DH5_DLL= -DH5HL_DLL= -Isrc -Ihl/src -I../gzip -I../szip c_build $HDF5_FLAGS -c src/H5.c -o hdf5_H5.o c_build $HDF5_FLAGS -c src/H5A.c -o hdf5_H5A.o c_build $HDF5_FLAGS -c src/H5AC.c -o hdf5_H5AC.o c_build $HDF5_FLAGS -c src/H5ACdbg.c -o hdf5_H5ACdbg.o c_build $HDF5_FLAGS -c src/H5ACproxy_entry.c -o hdf5_H5ACproxy_entry.o c_build $HDF5_FLAGS -c src/H5Abtree2.c -o hdf5_H5Abtree2.o c_build $HDF5_FLAGS -c src/H5Adense.c -o hdf5_H5Adense.o c_build $HDF5_FLAGS -c src/H5Adeprec.c -o hdf5_H5Adeprec.o c_build $HDF5_FLAGS -c src/H5Aint.c -o hdf5_H5Aint.o c_build $HDF5_FLAGS -c src/H5Atest.c -o hdf5_H5Atest.o c_build $HDF5_FLAGS -c src/H5B.c -o hdf5_H5B.o c_build $HDF5_FLAGS -c src/H5B2.c -o hdf5_H5B2.o c_build $HDF5_FLAGS -c src/H5B2cache.c -o hdf5_H5B2cache.o c_build $HDF5_FLAGS -c src/H5B2dbg.c -o hdf5_H5B2dbg.o c_build $HDF5_FLAGS -c src/H5B2hdr.c -o hdf5_H5B2hdr.o c_build $HDF5_FLAGS -c src/H5B2int.c -o hdf5_H5B2int.o c_build $HDF5_FLAGS -c src/H5B2internal.c -o hdf5_H5B2internal.o c_build $HDF5_FLAGS -c src/H5B2leaf.c -o hdf5_H5B2leaf.o c_build $HDF5_FLAGS -c src/H5B2stat.c -o hdf5_H5B2stat.o c_build $HDF5_FLAGS -c src/H5B2test.c -o hdf5_H5B2test.o c_build $HDF5_FLAGS -c src/H5Bcache.c -o hdf5_H5Bcache.o c_build $HDF5_FLAGS -c src/H5Bdbg.c -o hdf5_H5Bdbg.o c_build $HDF5_FLAGS -c src/H5C.c -o hdf5_H5C.o c_build $HDF5_FLAGS -c src/H5CX.c -o hdf5_H5CX.o c_build $HDF5_FLAGS -c src/H5Cdbg.c -o hdf5_H5Cdbg.o c_build $HDF5_FLAGS -c src/H5Centry.c -o hdf5_H5Centry.o c_build $HDF5_FLAGS -c src/H5Cepoch.c -o hdf5_H5Cepoch.o c_build $HDF5_FLAGS -c src/H5Cimage.c -o hdf5_H5Cimage.o c_build $HDF5_FLAGS -c src/H5Cint.c -o hdf5_H5Cint.o c_build $HDF5_FLAGS -c src/H5Clog.c -o hdf5_H5Clog.o c_build $HDF5_FLAGS -c src/H5Clog_json.c -o hdf5_H5Clog_json.o c_build $HDF5_FLAGS -c src/H5Clog_trace.c -o hdf5_H5Clog_trace.o c_build $HDF5_FLAGS -c src/H5Cprefetched.c -o hdf5_H5Cprefetched.o c_build $HDF5_FLAGS -c src/H5Cquery.c -o hdf5_H5Cquery.o c_build $HDF5_FLAGS -c src/H5Ctag.c -o hdf5_H5Ctag.o c_build $HDF5_FLAGS -c src/H5Ctest.c -o hdf5_H5Ctest.o c_build $HDF5_FLAGS -c src/H5D.c -o hdf5_H5D.o c_build $HDF5_FLAGS -c src/H5Dbtree.c -o hdf5_H5Dbtree.o c_build $HDF5_FLAGS -c src/H5Dbtree2.c -o hdf5_H5Dbtree2.o c_build $HDF5_FLAGS -c src/H5Dchunk.c -o hdf5_H5Dchunk.o c_build $HDF5_FLAGS -c src/H5Dcompact.c -o hdf5_H5Dcompact.o c_build $HDF5_FLAGS -c src/H5Dcontig.c -o hdf5_H5Dcontig.o c_build $HDF5_FLAGS -c src/H5Ddbg.c -o hdf5_H5Ddbg.o c_build $HDF5_FLAGS -c src/H5Ddeprec.c -o hdf5_H5Ddeprec.o c_build $HDF5_FLAGS -c src/H5Dearray.c -o hdf5_H5Dearray.o c_build $HDF5_FLAGS -c src/H5Defl.c -o hdf5_H5Defl.o c_build $HDF5_FLAGS -c src/H5Dfarray.c -o hdf5_H5Dfarray.o c_build $HDF5_FLAGS -c src/H5Dfill.c -o hdf5_H5Dfill.o c_build $HDF5_FLAGS -c src/H5Dint.c -o hdf5_H5Dint.o c_build $HDF5_FLAGS -c src/H5Dio.c -o hdf5_H5Dio.o c_build $HDF5_FLAGS -c src/H5Dlayout.c -o hdf5_H5Dlayout.o c_build $HDF5_FLAGS -c src/H5Dnone.c -o hdf5_H5Dnone.o c_build $HDF5_FLAGS -c src/H5Doh.c -o hdf5_H5Doh.o c_build $HDF5_FLAGS -c src/H5Dscatgath.c -o hdf5_H5Dscatgath.o c_build $HDF5_FLAGS -c src/H5Dselect.c -o hdf5_H5Dselect.o c_build $HDF5_FLAGS -c src/H5Dsingle.c -o hdf5_H5Dsingle.o c_build $HDF5_FLAGS -c src/H5Dtest.c -o hdf5_H5Dtest.o c_build $HDF5_FLAGS -c src/H5Dvirtual.c -o hdf5_H5Dvirtual.o c_build $HDF5_FLAGS -c src/H5E.c -o hdf5_H5E.o c_build $HDF5_FLAGS -c src/H5EA.c -o hdf5_H5EA.o c_build $HDF5_FLAGS -c src/H5EAcache.c -o hdf5_H5EAcache.o c_build $HDF5_FLAGS -c src/H5EAdbg.c -o hdf5_H5EAdbg.o c_build $HDF5_FLAGS -c src/H5EAdblkpage.c -o hdf5_H5EAdblkpage.o c_build $HDF5_FLAGS -c src/H5EAdblock.c -o hdf5_H5EAdblock.o c_build $HDF5_FLAGS -c src/H5EAhdr.c -o hdf5_H5EAhdr.o c_build $HDF5_FLAGS -c src/H5EAiblock.c -o hdf5_H5EAiblock.o c_build $HDF5_FLAGS -c src/H5EAint.c -o hdf5_H5EAint.o c_build $HDF5_FLAGS -c src/H5EAsblock.c -o hdf5_H5EAsblock.o c_build $HDF5_FLAGS -c src/H5EAstat.c -o hdf5_H5EAstat.o c_build 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hdf5_H5Pmapl.o c_build $HDF5_FLAGS -c src/H5Pmcpl.c -o hdf5_H5Pmcpl.o c_build $HDF5_FLAGS -c src/H5Pocpl.c -o hdf5_H5Pocpl.o c_build $HDF5_FLAGS -c src/H5Pocpypl.c -o hdf5_H5Pocpypl.o c_build $HDF5_FLAGS -c src/H5Pstrcpl.c -o hdf5_H5Pstrcpl.o c_build $HDF5_FLAGS -c src/H5Ptest.c -o hdf5_H5Ptest.o c_build $HDF5_FLAGS -c src/H5R.c -o hdf5_H5R.o c_build $HDF5_FLAGS -c src/H5RS.c -o hdf5_H5RS.o c_build $HDF5_FLAGS -c src/H5RT.c -o hdf5_H5RT.o c_build $HDF5_FLAGS -c src/H5Rdeprec.c -o hdf5_H5Rdeprec.o c_build $HDF5_FLAGS -c src/H5Rint.c -o hdf5_H5Rint.o c_build $HDF5_FLAGS -c src/H5S.c -o hdf5_H5S.o c_build $HDF5_FLAGS -c src/H5SL.c -o hdf5_H5SL.o c_build $HDF5_FLAGS -c src/H5SM.c -o hdf5_H5SM.o c_build $HDF5_FLAGS -c src/H5SMbtree2.c -o hdf5_H5SMbtree2.o c_build $HDF5_FLAGS -c src/H5SMcache.c -o hdf5_H5SMcache.o c_build $HDF5_FLAGS -c src/H5SMmessage.c -o hdf5_H5SMmessage.o c_build $HDF5_FLAGS -c src/H5SMtest.c -o hdf5_H5SMtest.o c_build $HDF5_FLAGS -c src/H5Sall.c -o hdf5_H5Sall.o c_build $HDF5_FLAGS -c src/H5Sdbg.c -o hdf5_H5Sdbg.o c_build $HDF5_FLAGS -c src/H5Sdeprec.c -o hdf5_H5Sdeprec.o c_build $HDF5_FLAGS -c src/H5Shyper.c -o hdf5_H5Shyper.o c_build $HDF5_FLAGS -c src/H5Snone.c -o hdf5_H5Snone.o c_build $HDF5_FLAGS -c src/H5Spoint.c -o hdf5_H5Spoint.o c_build $HDF5_FLAGS -c src/H5Sselect.c -o hdf5_H5Sselect.o c_build $HDF5_FLAGS -c src/H5Stest.c -o hdf5_H5Stest.o c_build $HDF5_FLAGS -c src/H5T.c -o hdf5_H5T.o c_build $HDF5_FLAGS -c src/H5TS.c -o hdf5_H5TS.o c_build $HDF5_FLAGS -c src/H5TSatomic.c -o hdf5_H5TSatomic.o c_build $HDF5_FLAGS -c src/H5TSbarrier.c -o hdf5_H5TSbarrier.o c_build $HDF5_FLAGS -c src/H5TScond.c -o hdf5_H5TScond.o c_build $HDF5_FLAGS -c src/H5TSint.c -o hdf5_H5TSint.o c_build $HDF5_FLAGS -c src/H5TSkey.c -o hdf5_H5TSkey.o c_build $HDF5_FLAGS -c src/H5TSmutex.c -o hdf5_H5TSmutex.o c_build $HDF5_FLAGS -c src/H5TSonce.c -o hdf5_H5TSonce.o c_build $HDF5_FLAGS -c src/H5TSpool.c -o hdf5_H5TSpool.o c_build $HDF5_FLAGS -c src/H5TSpthread.c -o hdf5_H5TSpthread.o c_build $HDF5_FLAGS -c src/H5TSrec_rwlock.c -o hdf5_H5TSrec_rwlock.o c_build $HDF5_FLAGS -c src/H5TSrwlock.c -o hdf5_H5TSrwlock.o c_build $HDF5_FLAGS -c src/H5TSsemaphore.c -o hdf5_H5TSsemaphore.o c_build $HDF5_FLAGS -c src/H5TSthread.c -o hdf5_H5TSthread.o c_build $HDF5_FLAGS -c src/H5TSwin.c -o hdf5_H5TSwin.o c_build $HDF5_FLAGS -c src/H5Tarray.c -o hdf5_H5Tarray.o c_build $HDF5_FLAGS -c src/H5Tbit.c -o hdf5_H5Tbit.o c_build $HDF5_FLAGS -c src/H5Tcommit.c -o hdf5_H5Tcommit.o c_build $HDF5_FLAGS -c src/H5Tcomplex.c -o hdf5_H5Tcomplex.o c_build $HDF5_FLAGS -c src/H5Tcompound.c -o hdf5_H5Tcompound.o c_build $HDF5_FLAGS -c src/H5Tconv.c -o hdf5_H5Tconv.o c_build $HDF5_FLAGS -c src/H5Tconv_array.c -o hdf5_H5Tconv_array.o c_build $HDF5_FLAGS -c src/H5Tconv_bitfield.c -o hdf5_H5Tconv_bitfield.o c_build $HDF5_FLAGS -c src/H5Tconv_complex.c -o hdf5_H5Tconv_complex.o c_build $HDF5_FLAGS -c src/H5Tconv_compound.c -o hdf5_H5Tconv_compound.o c_build $HDF5_FLAGS -c src/H5Tconv_enum.c -o hdf5_H5Tconv_enum.o c_build $HDF5_FLAGS -c src/H5Tconv_float.c -o hdf5_H5Tconv_float.o c_build $HDF5_FLAGS -c src/H5Tconv_integer.c -o hdf5_H5Tconv_integer.o c_build $HDF5_FLAGS -c src/H5Tconv_reference.c -o hdf5_H5Tconv_reference.o c_build $HDF5_FLAGS -c src/H5Tconv_string.c -o hdf5_H5Tconv_string.o c_build $HDF5_FLAGS -c src/H5Tconv_vlen.c -o hdf5_H5Tconv_vlen.o c_build $HDF5_FLAGS -c src/H5Tcset.c -o hdf5_H5Tcset.o c_build $HDF5_FLAGS -c src/H5Tdbg.c -o hdf5_H5Tdbg.o c_build $HDF5_FLAGS -c src/H5Tdeprec.c -o hdf5_H5Tdeprec.o c_build $HDF5_FLAGS -c src/H5Tenum.c -o hdf5_H5Tenum.o c_build $HDF5_FLAGS -c src/H5Tfields.c -o hdf5_H5Tfields.o c_build $HDF5_FLAGS -c src/H5Tfixed.c -o hdf5_H5Tfixed.o c_build $HDF5_FLAGS -c src/H5Tfloat.c -o hdf5_H5Tfloat.o c_build $HDF5_FLAGS -c src/H5Tinit_float.c -o hdf5_H5Tinit_float.o c_build $HDF5_FLAGS -c src/H5Tnative.c -o hdf5_H5Tnative.o c_build $HDF5_FLAGS -c src/H5Toffset.c -o hdf5_H5Toffset.o c_build $HDF5_FLAGS -c src/H5Toh.c -o hdf5_H5Toh.o c_build $HDF5_FLAGS -c src/H5Topaque.c -o hdf5_H5Topaque.o c_build $HDF5_FLAGS -c src/H5Torder.c -o hdf5_H5Torder.o c_build $HDF5_FLAGS -c src/H5Tpad.c -o hdf5_H5Tpad.o c_build $HDF5_FLAGS -c src/H5Tprecis.c -o hdf5_H5Tprecis.o c_build $HDF5_FLAGS -c src/H5Tref.c -o hdf5_H5Tref.o c_build $HDF5_FLAGS -c src/H5Tstrpad.c -o hdf5_H5Tstrpad.o c_build $HDF5_FLAGS -c src/H5Tvisit.c -o hdf5_H5Tvisit.o c_build $HDF5_FLAGS -c src/H5Tvlen.c -o hdf5_H5Tvlen.o c_build $HDF5_FLAGS -c src/H5UC.c -o hdf5_H5UC.o c_build $HDF5_FLAGS -c src/H5VL.c -o hdf5_H5VL.o c_build $HDF5_FLAGS -c src/H5VLcallback.c -o hdf5_H5VLcallback.o c_build $HDF5_FLAGS -c src/H5VLdyn_ops.c -o hdf5_H5VLdyn_ops.o c_build $HDF5_FLAGS -c src/H5VLint.c -o hdf5_H5VLint.o c_build $HDF5_FLAGS -c src/H5VLnative.c -o hdf5_H5VLnative.o c_build $HDF5_FLAGS -c src/H5VLnative_attr.c -o hdf5_H5VLnative_attr.o c_build $HDF5_FLAGS -c src/H5VLnative_blob.c -o hdf5_H5VLnative_blob.o c_build $HDF5_FLAGS -c src/H5VLnative_dataset.c -o hdf5_H5VLnative_dataset.o c_build $HDF5_FLAGS -c src/H5VLnative_datatype.c -o hdf5_H5VLnative_datatype.o c_build $HDF5_FLAGS -c src/H5VLnative_file.c -o hdf5_H5VLnative_file.o c_build $HDF5_FLAGS -c src/H5VLnative_group.c -o hdf5_H5VLnative_group.o c_build $HDF5_FLAGS -c src/H5VLnative_introspect.c -o hdf5_H5VLnative_introspect.o c_build $HDF5_FLAGS -c src/H5VLnative_link.c -o hdf5_H5VLnative_link.o c_build $HDF5_FLAGS -c src/H5VLnative_object.c -o hdf5_H5VLnative_object.o c_build $HDF5_FLAGS -c src/H5VLnative_token.c -o hdf5_H5VLnative_token.o c_build $HDF5_FLAGS -c src/H5VLpassthru.c -o hdf5_H5VLpassthru.o c_build $HDF5_FLAGS -c src/H5VLpassthru_int.c -o hdf5_H5VLpassthru_int.o c_build $HDF5_FLAGS -c src/H5VLquery.c -o hdf5_H5VLquery.o c_build $HDF5_FLAGS -c src/H5VLtest.c -o hdf5_H5VLtest.o c_build $HDF5_FLAGS -c src/H5VM.c -o hdf5_H5VM.o c_build $HDF5_FLAGS -c src/H5WB.c -o hdf5_H5WB.o c_build $HDF5_FLAGS -c src/H5Z.c -o hdf5_H5Z.o c_build $HDF5_FLAGS -c src/H5Zdeflate.c -o hdf5_H5Zdeflate.o c_build $HDF5_FLAGS -c src/H5Zfletcher32.c -o hdf5_H5Zfletcher32.o c_build $HDF5_FLAGS -c src/H5Znbit.c -o hdf5_H5Znbit.o c_build $HDF5_FLAGS -c src/H5Zscaleoffset.c -o hdf5_H5Zscaleoffset.o c_build $HDF5_FLAGS -c src/H5Zshuffle.c -o hdf5_H5Zshuffle.o c_build $HDF5_FLAGS -c src/H5Zszip.c -o hdf5_H5Zszip.o c_build $HDF5_FLAGS -c src/H5Ztrans.c -o hdf5_H5Ztrans.o c_build $HDF5_FLAGS -c src/H5checksum.c -o hdf5_H5checksum.o c_build $HDF5_FLAGS -c src/H5dbg.c -o hdf5_H5dbg.o c_build $HDF5_FLAGS -c src/H5system.c -o hdf5_H5system.o c_build $HDF5_FLAGS -c src/H5timer.c -o hdf5_H5timer.o c_build $HDF5_FLAGS -c src/H5trace.c -o hdf5_H5trace.o c_build $HDF5_FLAGS -c hl/src/H5DO.c -o hdf5_H5DO.o c_build $HDF5_FLAGS -c hl/src/H5DS.c -o hdf5_H5DS.o c_build $HDF5_FLAGS -c hl/src/H5IM.c -o hdf5_H5IM.o c_build $HDF5_FLAGS -c hl/src/H5LD.c -o hdf5_H5LD.o c_build $HDF5_FLAGS -c hl/src/H5LT.c -o hdf5_H5LT.o c_build $HDF5_FLAGS -c hl/src/H5LTanalyze.c -o hdf5_H5LTanalyze.o c_build $HDF5_FLAGS -c hl/src/H5LTparse.c -o hdf5_H5LTparse.o c_build $HDF5_FLAGS -c hl/src/H5PT.c -o hdf5_H5PT.o c_build $HDF5_FLAGS -c hl/src/H5TB.c -o hdf5_H5TB.o --- [hdf5lib] Linking static library... Performing partial linking (ld -r)... Stripping debug symbols... --- [hdf5lib] Installing... Final library size: 15M --- [hdf5lib] HDF5 and Plugin Compilation Complete --- ** libs using C compiler: ‘clang version 22.1.2 (https://github.com/llvm/llvm-project 1ab49a973e210e97d61e5db6557180dcb92c3e98)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/hdf5lib/src' clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c dummy.c -o dummy.o clang-22 -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o hdf5lib.so dummy.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/hdf5lib/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/hdf5lib/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/hdf5lib/src' installing via 'install.libs.R' to /data/gannet/ripley/R/packages/tests-clang/hdf5lib.Rcheck/00LOCK-hdf5lib/00new/hdf5lib ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hdf5lib)