* installing *source* package ‘harmony’ ...
** this is package ‘harmony’ version ‘2.0.2’
** package ‘harmony’ successfully unpacked and MD5 sums checked
** using staged installation
checking for BLAS procedures (sdot_, sgemm_)...
  BLAS procedures NOT found -- disabling BLAS for Armadillo
checking for LAPACK procedures (sgesv_)...
  LAPACK procedures NOT found -- disabling LAPACK for Armadillo
configure: src/Makevars written
  PKG_CXXFLAGS = -DARMA_USE_CURRENT -DARMA_DONT_USE_BLAS -DARMA_DONT_USE_LAPACK
  PKG_LIBS     = -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm
** libs
using C++ compiler: ‘clang version 22.1.5 (https://github.com/llvm/llvm-project 5ea218a153f4d2f815b8244eab3e4b4ba5e00e6c)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/harmony/src'
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -DARMA_USE_CURRENT -DARMA_DONT_USE_BLAS -DARMA_DONT_USE_LAPACK -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RcppExports.cpp -o RcppExports.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -DARMA_USE_CURRENT -DARMA_DONT_USE_BLAS -DARMA_DONT_USE_LAPACK -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c harmony.cpp -o harmony.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -DARMA_USE_CURRENT -DARMA_DONT_USE_BLAS -DARMA_DONT_USE_LAPACK -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c timer.cpp -o timer.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -DARMA_USE_CURRENT -DARMA_DONT_USE_BLAS -DARMA_DONT_USE_LAPACK -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c utils.cpp -o utils.o
clang++-22 -stdlib=libc++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o harmony.so RcppExports.o harmony.o timer.o utils.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/harmony/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/harmony/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/harmony/src'
installing to /data/gannet/ripley/R/packages/tests-clang/harmony.Rcheck/00LOCK-harmony/00new/harmony/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (harmony)