* installing *source* package ‘h5lite’ ... ** this is package ‘h5lite’ version ‘2.0.0.2’ ** package ‘h5lite’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/h5lite/src' clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/data/gannet/ripley/R/test-clang/hdf5lib/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c data.frame.c -o data.frame.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/data/gannet/ripley/R/test-clang/hdf5lib/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c dimscales.c -o dimscales.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/data/gannet/ripley/R/test-clang/hdf5lib/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c info.c -o info.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/data/gannet/ripley/R/test-clang/hdf5lib/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/data/gannet/ripley/R/test-clang/hdf5lib/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c ls.c -o ls.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/data/gannet/ripley/R/test-clang/hdf5lib/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c organize.c -o organize.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/data/gannet/ripley/R/test-clang/hdf5lib/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c read.c -o read.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/data/gannet/ripley/R/test-clang/hdf5lib/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c util.c -o util.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/data/gannet/ripley/R/test-clang/hdf5lib/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c write.c -o write.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/data/gannet/ripley/R/test-clang/hdf5lib/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c write_utils.c -o write_utils.o clang-22 -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/22/lib/x86_64-unknown-linux-gnu -o h5lite.so data.frame.o dimscales.o info.o init.o ls.o organize.o read.o util.o write.o write_utils.o -L/data/gannet/ripley/R/test-clang/hdf5lib/lib -lhdf5z -lpthread -ldl make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/h5lite/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/h5lite/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/h5lite/src' installing to /data/gannet/ripley/R/packages/tests-clang/h5lite.Rcheck/00LOCK-h5lite/00new/h5lite/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (h5lite)