* installing *source* package ‘h5lite’ ...
** this is package ‘h5lite’ version ‘2.0.0.2’
** package ‘h5lite’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 21.1.8’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/h5lite/src'
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/data/gannet/ripley/R/test-clang/hdf5lib/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c data.frame.c -o data.frame.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/data/gannet/ripley/R/test-clang/hdf5lib/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c dimscales.c -o dimscales.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/data/gannet/ripley/R/test-clang/hdf5lib/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c info.c -o info.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/data/gannet/ripley/R/test-clang/hdf5lib/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c init.c -o init.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/data/gannet/ripley/R/test-clang/hdf5lib/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c ls.c -o ls.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/data/gannet/ripley/R/test-clang/hdf5lib/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c organize.c -o organize.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/data/gannet/ripley/R/test-clang/hdf5lib/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c read.c -o read.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/data/gannet/ripley/R/test-clang/hdf5lib/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c util.c -o util.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/data/gannet/ripley/R/test-clang/hdf5lib/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c write.c -o write.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "cat(hdf5lib::c_flags(200))"` -I'/data/gannet/ripley/R/test-clang/hdf5lib/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c write_utils.c -o write_utils.o
/usr/local/clang21/bin/clang -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o h5lite.so data.frame.o dimscales.o info.o init.o ls.o organize.o read.o util.o write.o write_utils.o -L/data/gannet/ripley/R/test-clang/hdf5lib/lib -lhdf5z -lpthread -ldl
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/h5lite/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/h5lite/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/h5lite/src'
installing to /data/gannet/ripley/R/packages/tests-clang/h5lite.Rcheck/00LOCK-h5lite/00new/h5lite/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (h5lite)