* installing *source* package ‘greed’ ...
** this is package ‘greed’ version ‘0.6.2’
** package ‘greed’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 23.1.5’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/greed/src'
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c CombinedIclModel.cpp -o CombinedIclModel.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c DcLbm.cpp -o DcLbm.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c DcSbm.cpp -o DcSbm.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c DcSbmUndirected.cpp -o DcSbmUndirected.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c DiagGmm.cpp -o DiagGmm.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c Fit.cpp -o Fit.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c Gmm.cpp -o Gmm.o
Fit.cpp:176:7: warning: unused variable 'N' [-Wunused-variable]
176 | int N = clr.n_elem;
| ^
Fit.cpp:189:8: warning: variable 'M' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
189 | if(model.is("DlvmPrior")){
| ^~~~~~~~~~~~~~~~~~~~~
Fit.cpp:207:10: note: uninitialized use occurs here
207 | return M;
| ^
Fit.cpp:189:5: note: remove the 'if' if its condition is always true
189 | if(model.is("DlvmPrior")){
| ^~~~~~~~~~~~~~~~~~~~~~~~~
Fit.cpp:179:15: note: initialize the variable 'M' to silence this warning
179 | IclModel * M;
| ^
| = nullptr
In file included from Gmm.cpp:5:
./Gmm.h:27:10: warning: private field 'normfact' is not used [-Wunused-private-field]
27 | double normfact;
| ^
1 warning generated.
2 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c IclModel.cpp -o IclModel.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c Lca.cpp -o Lca.o
IclModel.cpp:101:7: warning: variable 'nbmove' set but not used [-Wunused-but-set-variable]
101 | int nbmove = 0;
| ^
IclModel.cpp:326:7: warning: variable 'nbmerge' set but not used [-Wunused-but-set-variable]
326 | int nbmerge = 0;
| ^
IclModel.cpp:391:7: warning: variable 'nbmerge' set but not used [-Wunused-but-set-variable]
391 | int nbmerge = 0;
| ^
IclModel.cpp:436:7: warning: variable 'nbmerge' set but not used [-Wunused-but-set-variable]
436 | int nbmerge = 0;
| ^
4 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c MergeMat.cpp -o MergeMat.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c Mm.cpp -o Mm.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c Mregs.cpp -o Mregs.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c MultSbm.cpp -o MultSbm.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c MultSbmUndirected.cpp -o MultSbmUndirected.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o
MultSbm.cpp:194:7: warning: unused variable 'cc' [-Wunused-variable]
194 | int cc, cc_old;
| ^~
MultSbm.cpp:194:11: warning: unused variable 'cc_old' [-Wunused-variable]
194 | int cc, cc_old;
| ^~~~~~
MultSbm.cpp:195:10: warning: unused variable 'oxc' [-Wunused-variable]
195 | double oxc,xc;
| ^~~
MultSbm.cpp:195:14: warning: unused variable 'xc' [-Wunused-variable]
195 | double oxc,xc;
| ^~
4 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c Sbm.cpp -o Sbm.o
MultSbmUndirected.cpp:33:7: warning: unused variable 'cc' [-Wunused-variable]
33 | int cc = 0;
| ^~
MultSbmUndirected.cpp:72:7: warning: unused variable 'cc' [-Wunused-variable]
72 | int cc, cc_old;
| ^~
MultSbmUndirected.cpp:72:11: warning: unused variable 'cc_old' [-Wunused-variable]
72 | int cc, cc_old;
| ^~~~~~
MultSbmUndirected.cpp:73:10: warning: unused variable 'oxc' [-Wunused-variable]
73 | double oxc,xc;
| ^~~
MultSbmUndirected.cpp:73:14: warning: unused variable 'xc' [-Wunused-variable]
73 | double oxc,xc;
| ^~
5 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c SbmUndirected.cpp -o SbmUndirected.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c SimpleIclCoModel.cpp -o SimpleIclCoModel.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c SimpleIclModel.cpp -o SimpleIclModel.o
SimpleIclCoModel.cpp:156:7: warning: unused variable 'cd' [-Wunused-variable]
156 | int cd = 0;
| ^~
1 warning generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c SpMergeMat.cpp -o SpMergeMat.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gicl_tools.cpp -o gicl_tools.o
gicl_tools.cpp:420:21: warning: unused variable 'm' [-Wunused-variable]
420 | int n = X.n_rows, m = X.n_cols, d=Y.n_cols;
| ^
gicl_tools.cpp:458:7: warning: unused variable 'm' [-Wunused-variable]
458 | int m = X.n_cols, d=Y.n_cols;
| ^
gicl_tools.cpp:493:7: warning: unused variable 'm' [-Wunused-variable]
493 | int m = X.n_cols, d=Y.n_cols;
| ^
gicl_tools.cpp:531:7: warning: unused variable 'm' [-Wunused-variable]
531 | int m = as<arma::mat>(current1["S"]).n_cols, d=as<arma::mat>(current1["Yty"]).n_cols;
| ^
gicl_tools.cpp:765:10: warning: unused variable 'd' [-Wunused-variable]
765 | double d = m1.n_cols;
| ^
5 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang23/lib -L/usr/local/clang23/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o greed.so CombinedIclModel.o DcLbm.o DcSbm.o DcSbmUndirected.o DiagGmm.o Fit.o Gmm.o IclModel.o Lca.o MergeMat.o Mm.o Mregs.o MultSbm.o MultSbmUndirected.o RcppExports.o Sbm.o SbmUndirected.o SimpleIclCoModel.o SimpleIclModel.o SpMergeMat.o gicl_tools.o -fopenmp -L/data/localhost/ripley/R/R-clang/lib -lRlapack -L/data/localhost/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/greed/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/greed/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/greed/src'
installing to /data/localhost/ripley/R/packages/tests-clang/greed.Rcheck/00LOCK-greed/00new/greed/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
creating formal generic function 'cut' in package 'greed'
creating formal generic function 'plot' in package 'greed'
creating formal generic function 'coef' in package 'greed'
using implicit definition in package 'stats'
creating formal generic function 'reorder' in package 'greed'
ignoring implicit definition in package 'stats'
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (greed)