* installing *source* package ‘gpboost’ ...
** this is package ‘gpboost’ version ‘1.6.7’
** package ‘gpboost’ successfully unpacked and MD5 sums checked
** using staged installation
checking location of R... /data/gannet/ripley/R/R-clang
checking whether MM_PREFETCH works... yes
checking whether MM_MALLOC works... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
specified C++17
using C compiler: ‘clang version 22.1.4 (https://github.com/llvm/llvm-project 35990504507d79e0b9deb809c8ee5e1b34ceef20)’
using C++ compiler: ‘clang version 22.1.4 (https://github.com/llvm/llvm-project 35990504507d79e0b9deb809c8ee5e1b34ceef20)’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/gpboost/src'
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c boosting/boosting.cpp -o boosting/boosting.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c boosting/gbdt.cpp -o boosting/gbdt.o
In file included from boosting/boosting.cpp:7:
In file included from boosting/dart.hpp:16:
In file included from boosting/gbdt.h:10:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:26:
In file included from ./include/Eigen/SparseCore:61:
./include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from boosting/boosting.cpp:7:
In file included from boosting/dart.hpp:16:
In file included from boosting/gbdt.h:10:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:29:
In file included from ./include/Eigen/SparseLU:35:
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from boosting/gbdt.cpp:6:
In file included from boosting/gbdt.h:10:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:26:
In file included from ./include/Eigen/SparseCore:61:
./include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from boosting/gbdt.cpp:6:
In file included from boosting/gbdt.h:10:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:29:
In file included from ./include/Eigen/SparseLU:35:
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c boosting/gbdt_model_text.cpp -o boosting/gbdt_model_text.o
In file included from boosting/gbdt_model_text.cpp:6:
In file included from ./include/LightGBM/metric.h:12:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:26:
In file included from ./include/Eigen/SparseCore:61:
./include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from boosting/gbdt_model_text.cpp:6:
In file included from ./include/LightGBM/metric.h:12:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:29:
In file included from ./include/Eigen/SparseLU:35:
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from boosting/boosting.cpp:7:
In file included from boosting/dart.hpp:16:
In file included from boosting/gbdt.h:10:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:13:
./include/GPBoost/re_model_template.h:387:95: warning: '&&' within '||' [-Wlogical-op-parentheses]
387 | if (gp_approx_ != "vecchia" && gp_approx_ != "full_scale_vecchia" && gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:387:95: note: place parentheses around the '&&' expression to silence this warning
387 | if (gp_approx_ != "vecchia" && gp_approx_ != "full_scale_vecchia" && gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" ||
| ^
| ( )
./include/GPBoost/re_model_template.h:443:31: warning: '&&' within '||' [-Wlogical-op-parentheses]
443 | if (use_woodbury_identity_ && !only_one_grouped_RE_calculations_on_RE_scale_ || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:443:31: note: place parentheses around the '&&' expression to silence this warning
443 | if (use_woodbury_identity_ && !only_one_grouped_RE_calculations_on_RE_scale_ || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
./include/GPBoost/re_model_template.h:4016:42: warning: '&&' within '||' [-Wlogical-op-parentheses]
4015 | if (gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4016 | gp_approx_ != "full_scale_vecchia" && gp_approx_ != "vecchia" || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:4016:42: note: place parentheses around the '&&' expression to silence this warning
4015 | if (gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" &&
|
| (
4016 | gp_approx_ != "full_scale_vecchia" && gp_approx_ != "vecchia" || grouped_RE_and_vecchia_GP_) {
| ^
| )
./include/GPBoost/re_model_template.h:6740:32: warning: '&&' within '||' [-Wlogical-op-parentheses]
6740 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:6740:32: note: place parentheses around the '&&' expression to silence this warning
6740 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
./include/GPBoost/re_model_template.h:6762:32: warning: '&&' within '||' [-Wlogical-op-parentheses]
6762 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:6762:32: note: place parentheses around the '&&' expression to silence this warning
6762 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
In file included from boosting/gbdt.cpp:6:
In file included from boosting/gbdt.h:10:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:13:
./include/GPBoost/re_model_template.h:387:95: warning: '&&' within '||' [-Wlogical-op-parentheses]
387 | if (gp_approx_ != "vecchia" && gp_approx_ != "full_scale_vecchia" && gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:387:95: note: place parentheses around the '&&' expression to silence this warning
387 | if (gp_approx_ != "vecchia" && gp_approx_ != "full_scale_vecchia" && gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" ||
| ^
| ( )
./include/GPBoost/re_model_template.h:443:31: warning: '&&' within '||' [-Wlogical-op-parentheses]
443 | if (use_woodbury_identity_ && !only_one_grouped_RE_calculations_on_RE_scale_ || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:443:31: note: place parentheses around the '&&' expression to silence this warning
443 | if (use_woodbury_identity_ && !only_one_grouped_RE_calculations_on_RE_scale_ || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
./include/GPBoost/re_model_template.h:4016:42: warning: '&&' within '||' [-Wlogical-op-parentheses]
4015 | if (gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4016 | gp_approx_ != "full_scale_vecchia" && gp_approx_ != "vecchia" || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:4016:42: note: place parentheses around the '&&' expression to silence this warning
4015 | if (gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" &&
|
| (
4016 | gp_approx_ != "full_scale_vecchia" && gp_approx_ != "vecchia" || grouped_RE_and_vecchia_GP_) {
| ^
| )
./include/GPBoost/re_model_template.h:6740:32: warning: '&&' within '||' [-Wlogical-op-parentheses]
6740 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:6740:32: note: place parentheses around the '&&' expression to silence this warning
6740 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
./include/GPBoost/re_model_template.h:6762:32: warning: '&&' within '||' [-Wlogical-op-parentheses]
6762 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:6762:32: note: place parentheses around the '&&' expression to silence this warning
6762 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c boosting/gbdt_prediction.cpp -o boosting/gbdt_prediction.o
8 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c boosting/prediction_early_stop.cpp -o boosting/prediction_early_stop.o
In file included from boosting/gbdt_prediction.cpp:6:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:26:
In file included from ./include/Eigen/SparseCore:61:
./include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from boosting/gbdt_prediction.cpp:6:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:29:
In file included from ./include/Eigen/SparseLU:35:
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
8 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c io/bin.cpp -o io/bin.o
In file included from boosting/gbdt_model_text.cpp:6:
In file included from ./include/LightGBM/metric.h:12:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:13:
./include/GPBoost/re_model_template.h:387:95: warning: '&&' within '||' [-Wlogical-op-parentheses]
387 | if (gp_approx_ != "vecchia" && gp_approx_ != "full_scale_vecchia" && gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:387:95: note: place parentheses around the '&&' expression to silence this warning
387 | if (gp_approx_ != "vecchia" && gp_approx_ != "full_scale_vecchia" && gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" ||
| ^
| ( )
./include/GPBoost/re_model_template.h:443:31: warning: '&&' within '||' [-Wlogical-op-parentheses]
443 | if (use_woodbury_identity_ && !only_one_grouped_RE_calculations_on_RE_scale_ || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:443:31: note: place parentheses around the '&&' expression to silence this warning
443 | if (use_woodbury_identity_ && !only_one_grouped_RE_calculations_on_RE_scale_ || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
io/bin.cpp:164:9: warning: variable 'left_cnt_data' set but not used [-Wunused-but-set-variable]
164 | int left_cnt_data = 0;
| ^
io/bin.cpp:165:9: warning: variable 'cnt_zero' set but not used [-Wunused-but-set-variable]
165 | int cnt_zero = 0;
| ^
io/bin.cpp:166:9: warning: variable 'right_cnt_data' set but not used [-Wunused-but-set-variable]
166 | int right_cnt_data = 0;
| ^
./include/GPBoost/re_model_template.h:4016:42: warning: '&&' within '||' [-Wlogical-op-parentheses]
4015 | if (gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4016 | gp_approx_ != "full_scale_vecchia" && gp_approx_ != "vecchia" || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:4016:42: note: place parentheses around the '&&' expression to silence this warning
4015 | if (gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" &&
|
| (
4016 | gp_approx_ != "full_scale_vecchia" && gp_approx_ != "vecchia" || grouped_RE_and_vecchia_GP_) {
| ^
| )
./include/GPBoost/re_model_template.h:6740:32: warning: '&&' within '||' [-Wlogical-op-parentheses]
6740 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:6740:32: note: place parentheses around the '&&' expression to silence this warning
6740 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
./include/GPBoost/re_model_template.h:6762:32: warning: '&&' within '||' [-Wlogical-op-parentheses]
6762 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:6762:32: note: place parentheses around the '&&' expression to silence this warning
6762 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
In file included from boosting/gbdt_prediction.cpp:6:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:13:
./include/GPBoost/re_model_template.h:387:95: warning: '&&' within '||' [-Wlogical-op-parentheses]
387 | if (gp_approx_ != "vecchia" && gp_approx_ != "full_scale_vecchia" && gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:387:95: note: place parentheses around the '&&' expression to silence this warning
387 | if (gp_approx_ != "vecchia" && gp_approx_ != "full_scale_vecchia" && gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" ||
| ^
| ( )
./include/GPBoost/re_model_template.h:443:31: warning: '&&' within '||' [-Wlogical-op-parentheses]
443 | if (use_woodbury_identity_ && !only_one_grouped_RE_calculations_on_RE_scale_ || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:443:31: note: place parentheses around the '&&' expression to silence this warning
443 | if (use_woodbury_identity_ && !only_one_grouped_RE_calculations_on_RE_scale_ || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
./include/GPBoost/re_model_template.h:4016:42: warning: '&&' within '||' [-Wlogical-op-parentheses]
4015 | if (gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4016 | gp_approx_ != "full_scale_vecchia" && gp_approx_ != "vecchia" || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:4016:42: note: place parentheses around the '&&' expression to silence this warning
4015 | if (gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" &&
|
| (
4016 | gp_approx_ != "full_scale_vecchia" && gp_approx_ != "vecchia" || grouped_RE_and_vecchia_GP_) {
| ^
| )
./include/GPBoost/re_model_template.h:6740:32: warning: '&&' within '||' [-Wlogical-op-parentheses]
6740 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:6740:32: note: place parentheses around the '&&' expression to silence this warning
6740 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
./include/GPBoost/re_model_template.h:6762:32: warning: '&&' within '||' [-Wlogical-op-parentheses]
6762 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:6762:32: note: place parentheses around the '&&' expression to silence this warning
6762 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
8 warnings generated.
3 warnings generated.
8 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c io/config.cpp -o io/config.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c io/config_auto.cpp -o io/config_auto.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c io/dataset.cpp -o io/dataset.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c io/dataset_loader.cpp -o io/dataset_loader.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c io/file_io.cpp -o io/file_io.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c io/json11.cpp -o io/json11.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c io/metadata.cpp -o io/metadata.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c io/parser.cpp -o io/parser.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c io/train_share_states.cpp -o io/train_share_states.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c io/tree.cpp -o io/tree.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c metric/dcg_calculator.cpp -o metric/dcg_calculator.o
In file included from metric/dcg_calculator.cpp:5:
In file included from ./include/LightGBM/metric.h:12:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:26:
In file included from ./include/Eigen/SparseCore:61:
./include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from metric/dcg_calculator.cpp:5:
In file included from ./include/LightGBM/metric.h:12:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:29:
In file included from ./include/Eigen/SparseLU:35:
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c metric/metric.cpp -o metric/metric.o
In file included from metric/dcg_calculator.cpp:5:
In file included from ./include/LightGBM/metric.h:12:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:13:
./include/GPBoost/re_model_template.h:387:95: warning: '&&' within '||' [-Wlogical-op-parentheses]
387 | if (gp_approx_ != "vecchia" && gp_approx_ != "full_scale_vecchia" && gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:387:95: note: place parentheses around the '&&' expression to silence this warning
387 | if (gp_approx_ != "vecchia" && gp_approx_ != "full_scale_vecchia" && gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" ||
| ^
| ( )
./include/GPBoost/re_model_template.h:443:31: warning: '&&' within '||' [-Wlogical-op-parentheses]
443 | if (use_woodbury_identity_ && !only_one_grouped_RE_calculations_on_RE_scale_ || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:443:31: note: place parentheses around the '&&' expression to silence this warning
443 | if (use_woodbury_identity_ && !only_one_grouped_RE_calculations_on_RE_scale_ || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
./include/GPBoost/re_model_template.h:4016:42: warning: '&&' within '||' [-Wlogical-op-parentheses]
4015 | if (gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4016 | gp_approx_ != "full_scale_vecchia" && gp_approx_ != "vecchia" || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:4016:42: note: place parentheses around the '&&' expression to silence this warning
4015 | if (gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" &&
|
| (
4016 | gp_approx_ != "full_scale_vecchia" && gp_approx_ != "vecchia" || grouped_RE_and_vecchia_GP_) {
| ^
| )
./include/GPBoost/re_model_template.h:6740:32: warning: '&&' within '||' [-Wlogical-op-parentheses]
6740 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:6740:32: note: place parentheses around the '&&' expression to silence this warning
6740 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
./include/GPBoost/re_model_template.h:6762:32: warning: '&&' within '||' [-Wlogical-op-parentheses]
6762 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:6762:32: note: place parentheses around the '&&' expression to silence this warning
6762 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
In file included from metric/metric.cpp:6:
In file included from ./include/LightGBM/metric.h:12:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:26:
In file included from ./include/Eigen/SparseCore:61:
./include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from metric/metric.cpp:6:
In file included from ./include/LightGBM/metric.h:12:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:29:
In file included from ./include/Eigen/SparseLU:35:
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
8 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c objective/objective_function.cpp -o objective/objective_function.o
In file included from objective/objective_function.cpp:6:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:26:
In file included from ./include/Eigen/SparseCore:61:
./include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from objective/objective_function.cpp:6:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:29:
In file included from ./include/Eigen/SparseLU:35:
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from metric/metric.cpp:6:
In file included from ./include/LightGBM/metric.h:12:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:13:
./include/GPBoost/re_model_template.h:387:95: warning: '&&' within '||' [-Wlogical-op-parentheses]
387 | if (gp_approx_ != "vecchia" && gp_approx_ != "full_scale_vecchia" && gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:387:95: note: place parentheses around the '&&' expression to silence this warning
387 | if (gp_approx_ != "vecchia" && gp_approx_ != "full_scale_vecchia" && gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" ||
| ^
| ( )
./include/GPBoost/re_model_template.h:443:31: warning: '&&' within '||' [-Wlogical-op-parentheses]
443 | if (use_woodbury_identity_ && !only_one_grouped_RE_calculations_on_RE_scale_ || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:443:31: note: place parentheses around the '&&' expression to silence this warning
443 | if (use_woodbury_identity_ && !only_one_grouped_RE_calculations_on_RE_scale_ || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
./include/GPBoost/re_model_template.h:4016:42: warning: '&&' within '||' [-Wlogical-op-parentheses]
4015 | if (gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4016 | gp_approx_ != "full_scale_vecchia" && gp_approx_ != "vecchia" || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:4016:42: note: place parentheses around the '&&' expression to silence this warning
4015 | if (gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" &&
|
| (
4016 | gp_approx_ != "full_scale_vecchia" && gp_approx_ != "vecchia" || grouped_RE_and_vecchia_GP_) {
| ^
| )
./include/GPBoost/re_model_template.h:6740:32: warning: '&&' within '||' [-Wlogical-op-parentheses]
6740 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:6740:32: note: place parentheses around the '&&' expression to silence this warning
6740 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
./include/GPBoost/re_model_template.h:6762:32: warning: '&&' within '||' [-Wlogical-op-parentheses]
6762 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:6762:32: note: place parentheses around the '&&' expression to silence this warning
6762 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
In file included from objective/objective_function.cpp:6:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:13:
./include/GPBoost/re_model_template.h:387:95: warning: '&&' within '||' [-Wlogical-op-parentheses]
387 | if (gp_approx_ != "vecchia" && gp_approx_ != "full_scale_vecchia" && gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:387:95: note: place parentheses around the '&&' expression to silence this warning
387 | if (gp_approx_ != "vecchia" && gp_approx_ != "full_scale_vecchia" && gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" ||
| ^
| ( )
./include/GPBoost/re_model_template.h:443:31: warning: '&&' within '||' [-Wlogical-op-parentheses]
443 | if (use_woodbury_identity_ && !only_one_grouped_RE_calculations_on_RE_scale_ || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:443:31: note: place parentheses around the '&&' expression to silence this warning
443 | if (use_woodbury_identity_ && !only_one_grouped_RE_calculations_on_RE_scale_ || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
./include/GPBoost/re_model_template.h:4016:42: warning: '&&' within '||' [-Wlogical-op-parentheses]
4015 | if (gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4016 | gp_approx_ != "full_scale_vecchia" && gp_approx_ != "vecchia" || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:4016:42: note: place parentheses around the '&&' expression to silence this warning
4015 | if (gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" &&
|
| (
4016 | gp_approx_ != "full_scale_vecchia" && gp_approx_ != "vecchia" || grouped_RE_and_vecchia_GP_) {
| ^
| )
./include/GPBoost/re_model_template.h:6740:32: warning: '&&' within '||' [-Wlogical-op-parentheses]
6740 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:6740:32: note: place parentheses around the '&&' expression to silence this warning
6740 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
./include/GPBoost/re_model_template.h:6762:32: warning: '&&' within '||' [-Wlogical-op-parentheses]
6762 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:6762:32: note: place parentheses around the '&&' expression to silence this warning
6762 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
8 warnings generated.
8 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c network/ifaddrs_patch.cpp -o network/ifaddrs_patch.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c network/linker_topo.cpp -o network/linker_topo.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c network/linkers_mpi.cpp -o network/linkers_mpi.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c network/linkers_socket.cpp -o network/linkers_socket.o
network/linkers_socket.cpp:174:7: warning: variable 'need_connect_cnt' set but not used [-Wunused-but-set-variable]
174 | int need_connect_cnt = 0;
| ^
1 warning generated.
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c network/network.cpp -o network/network.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c treelearner/data_parallel_tree_learner.cpp -o treelearner/data_parallel_tree_learner.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c treelearner/feature_parallel_tree_learner.cpp -o treelearner/feature_parallel_tree_learner.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c treelearner/gpu_tree_learner.cpp -o treelearner/gpu_tree_learner.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c treelearner/linear_tree_learner.cpp -o treelearner/linear_tree_learner.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c treelearner/serial_tree_learner.cpp -o treelearner/serial_tree_learner.o
In file included from treelearner/serial_tree_learner.cpp:9:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:26:
In file included from ./include/Eigen/SparseCore:61:
./include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from treelearner/serial_tree_learner.cpp:9:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:29:
In file included from ./include/Eigen/SparseLU:35:
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c treelearner/tree_learner.cpp -o treelearner/tree_learner.o
In file included from treelearner/serial_tree_learner.cpp:9:
In file included from ./include/LightGBM/objective_function.h:9:
In file included from ./include/GPBoost/re_model.h:13:
./include/GPBoost/re_model_template.h:387:95: warning: '&&' within '||' [-Wlogical-op-parentheses]
387 | if (gp_approx_ != "vecchia" && gp_approx_ != "full_scale_vecchia" && gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:387:95: note: place parentheses around the '&&' expression to silence this warning
387 | if (gp_approx_ != "vecchia" && gp_approx_ != "full_scale_vecchia" && gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" ||
| ^
| ( )
./include/GPBoost/re_model_template.h:443:31: warning: '&&' within '||' [-Wlogical-op-parentheses]
443 | if (use_woodbury_identity_ && !only_one_grouped_RE_calculations_on_RE_scale_ || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:443:31: note: place parentheses around the '&&' expression to silence this warning
443 | if (use_woodbury_identity_ && !only_one_grouped_RE_calculations_on_RE_scale_ || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
./include/GPBoost/re_model_template.h:4016:42: warning: '&&' within '||' [-Wlogical-op-parentheses]
4015 | if (gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4016 | gp_approx_ != "full_scale_vecchia" && gp_approx_ != "vecchia" || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:4016:42: note: place parentheses around the '&&' expression to silence this warning
4015 | if (gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" &&
|
| (
4016 | gp_approx_ != "full_scale_vecchia" && gp_approx_ != "vecchia" || grouped_RE_and_vecchia_GP_) {
| ^
| )
./include/GPBoost/re_model_template.h:6740:32: warning: '&&' within '||' [-Wlogical-op-parentheses]
6740 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:6740:32: note: place parentheses around the '&&' expression to silence this warning
6740 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
./include/GPBoost/re_model_template.h:6762:32: warning: '&&' within '||' [-Wlogical-op-parentheses]
6762 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:6762:32: note: place parentheses around the '&&' expression to silence this warning
6762 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c treelearner/voting_parallel_tree_learner.cpp -o treelearner/voting_parallel_tree_learner.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c c_api.cpp -o c_api.o
In file included from c_api.cpp:12:
In file included from ./include/GPBoost/re_model.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:26:
In file included from ./include/Eigen/SparseCore:61:
./include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from c_api.cpp:12:
In file included from ./include/GPBoost/re_model.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:29:
In file included from ./include/Eigen/SparseLU:35:
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gpboost_R.cpp -o gpboost_R.o
In file included from c_api.cpp:12:
In file included from ./include/GPBoost/re_model.h:13:
./include/GPBoost/re_model_template.h:387:95: warning: '&&' within '||' [-Wlogical-op-parentheses]
387 | if (gp_approx_ != "vecchia" && gp_approx_ != "full_scale_vecchia" && gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:387:95: note: place parentheses around the '&&' expression to silence this warning
387 | if (gp_approx_ != "vecchia" && gp_approx_ != "full_scale_vecchia" && gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" ||
| ^
| ( )
./include/GPBoost/re_model_template.h:443:31: warning: '&&' within '||' [-Wlogical-op-parentheses]
443 | if (use_woodbury_identity_ && !only_one_grouped_RE_calculations_on_RE_scale_ || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:443:31: note: place parentheses around the '&&' expression to silence this warning
443 | if (use_woodbury_identity_ && !only_one_grouped_RE_calculations_on_RE_scale_ || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
./include/GPBoost/re_model_template.h:4016:42: warning: '&&' within '||' [-Wlogical-op-parentheses]
4015 | if (gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4016 | gp_approx_ != "full_scale_vecchia" && gp_approx_ != "vecchia" || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:4016:42: note: place parentheses around the '&&' expression to silence this warning
4015 | if (gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" &&
|
| (
4016 | gp_approx_ != "full_scale_vecchia" && gp_approx_ != "vecchia" || grouped_RE_and_vecchia_GP_) {
| ^
| )
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c re_model.cpp -o re_model.o
./include/GPBoost/re_model_template.h:6740:32: warning: '&&' within '||' [-Wlogical-op-parentheses]
6740 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:6740:32: note: place parentheses around the '&&' expression to silence this warning
6740 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
./include/GPBoost/re_model_template.h:6762:32: warning: '&&' within '||' [-Wlogical-op-parentheses]
6762 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:6762:32: note: place parentheses around the '&&' expression to silence this warning
6762 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
In file included from re_model.cpp:9:
In file included from ./include/GPBoost/re_model.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:26:
In file included from ./include/Eigen/SparseCore:61:
./include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from re_model.cpp:9:
In file included from ./include/GPBoost/re_model.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:29:
In file included from ./include/Eigen/SparseLU:35:
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
8 warnings generated.
In file included from re_model.cpp:9:
In file included from ./include/GPBoost/re_model.h:13:
./include/GPBoost/re_model_template.h:387:95: warning: '&&' within '||' [-Wlogical-op-parentheses]
387 | if (gp_approx_ != "vecchia" && gp_approx_ != "full_scale_vecchia" && gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:387:95: note: place parentheses around the '&&' expression to silence this warning
387 | if (gp_approx_ != "vecchia" && gp_approx_ != "full_scale_vecchia" && gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" ||
| ^
| ( )
./include/GPBoost/re_model_template.h:443:31: warning: '&&' within '||' [-Wlogical-op-parentheses]
443 | if (use_woodbury_identity_ && !only_one_grouped_RE_calculations_on_RE_scale_ || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:443:31: note: place parentheses around the '&&' expression to silence this warning
443 | if (use_woodbury_identity_ && !only_one_grouped_RE_calculations_on_RE_scale_ || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
./include/GPBoost/re_model_template.h:4016:42: warning: '&&' within '||' [-Wlogical-op-parentheses]
4015 | if (gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4016 | gp_approx_ != "full_scale_vecchia" && gp_approx_ != "vecchia" || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:4016:42: note: place parentheses around the '&&' expression to silence this warning
4015 | if (gp_approx_ != "fitc" && gp_approx_ != "full_scale_tapering" &&
|
| (
4016 | gp_approx_ != "full_scale_vecchia" && gp_approx_ != "vecchia" || grouped_RE_and_vecchia_GP_) {
| ^
| )
./include/GPBoost/re_model_template.h:6740:32: warning: '&&' within '||' [-Wlogical-op-parentheses]
6740 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:6740:32: note: place parentheses around the '&&' expression to silence this warning
6740 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
./include/GPBoost/re_model_template.h:6762:32: warning: '&&' within '||' [-Wlogical-op-parentheses]
6762 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
./include/GPBoost/re_model_template.h:6762:32: note: place parentheses around the '&&' expression to silence this warning
6762 | if (use_woodbury_identity_ && ((num_re_group_total_ > 1) || linear_kernel_use_woodbury_identity_) || grouped_RE_and_vecchia_GP_) {
| ^
| ( )
8 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sparse_matrix_utils.cpp -o sparse_matrix_utils.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c GP_utils.cpp -o GP_utils.o
In file included from sparse_matrix_utils.cpp:9:
In file included from ./include/GPBoost/sparse_matrix_utils.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:26:
In file included from ./include/Eigen/SparseCore:61:
./include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from sparse_matrix_utils.cpp:9:
In file included from ./include/GPBoost/sparse_matrix_utils.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:29:
In file included from ./include/Eigen/SparseLU:35:
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
In file included from GP_utils.cpp:9:
In file included from ./include/GPBoost/GP_utils.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:26:
In file included from ./include/Eigen/SparseCore:61:
./include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from GP_utils.cpp:9:
In file included from ./include/GPBoost/GP_utils.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:29:
In file included from ./include/Eigen/SparseLU:35:
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c DF_utils.cpp -o DF_utils.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c Vecchia_utils.cpp -o Vecchia_utils.o
In file included from Vecchia_utils.cpp:9:
In file included from ./include/GPBoost/Vecchia_utils.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:26:
In file included from ./include/Eigen/SparseCore:61:
./include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from Vecchia_utils.cpp:9:
In file included from ./include/GPBoost/Vecchia_utils.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:29:
In file included from ./include/Eigen/SparseLU:35:
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
Vecchia_utils.cpp:462:9: warning: variable 'start_dim' set but not used [-Wunused-but-set-variable]
462 | int start_dim = 0;
| ^
Vecchia_utils.cpp:1290:17: warning: variable 'ctr_grad' set but not used [-Wunused-but-set-variable]
1290 | int ctr = 0, ctr_grad = 0;
| ^
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -pthread -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c CG_utils.cpp -o CG_utils.o
In file included from CG_utils.cpp:9:
In file included from ./include/GPBoost/CG_utils.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:26:
In file included from ./include/Eigen/SparseCore:61:
./include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from CG_utils.cpp:9:
In file included from ./include/GPBoost/CG_utils.h:12:
In file included from ./include/GPBoost/type_defs.h:20:
In file included from ./include/Eigen/Sparse:29:
In file included from ./include/Eigen/SparseLU:35:
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
./include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
5 warnings generated.
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cs_spsolve.c -o cs_spsolve.o
3 warnings generated.
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cs_reach.c -o cs_reach.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cs_dfs.c -o cs_dfs.o
8 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o gpboost.so boosting/boosting.o boosting/gbdt.o boosting/gbdt_model_text.o boosting/gbdt_prediction.o boosting/prediction_early_stop.o io/bin.o io/config.o io/config_auto.o io/dataset.o io/dataset_loader.o io/file_io.o io/json11.o io/metadata.o io/parser.o io/train_share_states.o io/tree.o metric/dcg_calculator.o metric/metric.o objective/objective_function.o network/ifaddrs_patch.o network/linker_topo.o network/linkers_mpi.o network/linkers_socket.o network/network.o treelearner/data_parallel_tree_learner.o treelearner/feature_parallel_tree_learner.o treelearner/gpu_tree_learner.o treelearner/linear_tree_learner.o treelearner/serial_tree_learner.o treelearner/tree_learner.o treelearner/voting_parallel_tree_learner.o c_api.o gpboost_R.o re_model.o sparse_matrix_utils.o GP_utils.o DF_utils.o Vecchia_utils.o CG_utils.o cs_spsolve.o cs_reach.o cs_dfs.o -fopenmp -pthread
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/gpboost/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/gpboost/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/gpboost/src'
installing to /data/gannet/ripley/R/packages/tests-clang/gpboost.Rcheck/00LOCK-gpboost/00new/gpboost/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gpboost)