* installing *source* package ‘glymotif’ ...
** this is package ‘glymotif’ version ‘1.0.0’
** package ‘glymotif’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 23.1.2’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/glymotif/src'
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c extract-motifs.cpp -o extract-motifs.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c structure-matcher.cpp -o structure-matcher.o
structure-matcher.cpp:126:31: warning: trigraph ignored [-Wtrigraphs]
  126 |       informative|=links[e]!="??-?";
      |                               ^
structure-matcher.cpp:281:44: warning: trigraph ignored [-Wtrigraphs]
  281 |           localized.informative|=a.token!="??-?";
      |                                            ^
2 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c vf2.cpp -o vf2.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang23/lib -L/usr/local/clang23/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o glymotif.so RcppExports.o extract-motifs.o structure-matcher.o vf2.o
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/glymotif/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/glymotif/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/glymotif/src'
installing to /data/localhost/ripley/R/packages/tests-clang/glymotif.Rcheck/00LOCK-glymotif/00new/glymotif/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (glymotif)