Install log for 'glmbayes'

* installing *source* package ‘glmbayes’ ...
** this is package ‘glmbayes’ version ‘0.9.3’
** package ‘glmbayes’ successfully unpacked and MD5 sums checked
** using staged installation
>> configure: R_HOME = '/data/gannet/ripley/R/R-clang'
>> Detected RcppParallel include dir: /data/gannet/ripley/R/test-clang/RcppParallel/include
>> Detected RcppParallel lib dir: /data/gannet/ripley/R/test-clang/RcppParallel/lib
>> RPP_INC_DIR      = '/data/gannet/ripley/R/test-clang/RcppParallel/include'
>> RPP_LIB_DIR      = '/data/gannet/ripley/R/test-clang/RcppParallel/lib'
🔧 EMSCRIPTEN_BUILD=NO
>> OS      = 'Linux'
>> RPP_CPPFLAGS = '-I/data/gannet/ripley/R/test-clang/RcppParallel/include'
>> RPP_LDFLAGS = '-L/data/gannet/ripley/R/test-clang/RcppParallel/lib -ltbb -ltbbmalloc -Wl,-rpath,/data/gannet/ripley/R/test-clang/RcppParallel/lib'
📚 Collecting system include directories from gcc...
/usr/libexec/gcc/x86_64-redhat-linux/15/cc1plus -E -quiet -v -D_GNU_SOURCE - -mtune=generic -march=x86-64 -dumpbase -
/usr/lib/gcc/x86_64-redhat-linux/15/../../../../include/c++/15
/usr/lib/gcc/x86_64-redhat-linux/15/../../../../include/c++/15/x86_64-redhat-linux
/usr/lib/gcc/x86_64-redhat-linux/15/../../../../include/c++/15/backward
/usr/lib/gcc/x86_64-redhat-linux/15/include
/usr/local/include
/usr/include
🔎 Checking: /usr/libexec/gcc/x86_64-redhat-linux/15/cc1plus
🔎 Checking: -E
🔎 Checking: -quiet
🔎 Checking: -v
🔎 Checking: -D_GNU_SOURCE
🔎 Checking: -
🔎 Checking: -mtune=generic
🔎 Checking: -march=x86-64
🔎 Checking: -dumpbase
🔎 Checking: -
🔎 Checking: /usr/lib/gcc/x86_64-redhat-linux/15/../../../../include/c++/15
🔎 Checking: /usr/lib/gcc/x86_64-redhat-linux/15/../../../../include/c++/15/x86_64-redhat-linux
🔎 Checking: /usr/lib/gcc/x86_64-redhat-linux/15/../../../../include/c++/15/backward
🔎 Checking: /usr/lib/gcc/x86_64-redhat-linux/15/include
🔎 Checking: /usr/local/include
🔎 Checking: /usr/include
✅ Found OpenCL header in: /usr/include
📚 Collecting system lib directories from gcc...
/usr/x86_64-redhat-linux/lib64
/usr/x86_64-redhat-linux/lib64
/usr/x86_64-redhat-linux/lib64
🔎 Checking: /usr/x86_64-redhat-linux/lib64
⚠️  OpenCL not found: falling back to CPU-only
Final OpenCL Detection:
OPENCL_INCLUDE_FOUND = yes
OPENCL_LIB_FOUND     = no
OPENCL_FOUND         = no
OPENCL_RUNTIME_FOUND = no
OpenCL manually disabled or not discovered
Checking for NVIDIA GPU via nvidia-smi...
⚠️ CUDA driver library not found — GPU detection may fail.
GPU detected: env: ‘/usr/bin/nvidia-smi’: No such file or directory
>> FULL_CXXFLAGS    = ''
>> FULL_LIBS        = ' $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)'
>> FULL_CXXFLAGS    = ' -I/data/gannet/ripley/R/test-clang/RcppParallel/include'
>> FULL_LIBS        = ' $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) -L/data/gannet/ripley/R/test-clang/RcppParallel/lib -ltbb -ltbbmalloc -Wl,-rpath,/data/gannet/ripley/R/test-clang/RcppParallel/lib'
>> Resolving Rcpp include flags via tools/rcpp_include.R
configure: single Rcpp installation: /data/gannet/ripley/R/test-clang
configure: R version: 4.7.0 (svn: 89998)
configure: Rcpp Repository: CRAN
configure: Rcpp Function.h: line with R_getVarEx + R_UnboundValue present = FALSE
configure: WARNING: Rcpp looks like a CRAN install (no GitHub Remote* fields).
configure: WARNING: On R-devel / R >= 4.5, stale CRAN headers can be incompatible
configure: WARNING: with R (e.g. R_NamespaceRegistry). Consider
configure: WARNING: remotes::install_github("RcppCore/Rcpp") or ensure
configure: WARNING: install_github actually replaced the library.
configure: Rcpp Function.h - `Function(const string& name, const string& ns)` C preprocessor path:
configure:   branch 3: R_getRegisteredNamespace
configure:   (R_VERSION < 4,5,0) => FALSE
configure:   (R_VERSION < 4,6,0 || R_SVN_REVISION < 89746) => FALSE  [parts: R_VERSION < 4,6,0 = FALSE; R_SVN_REVISION < 89746 = FALSE]
configure:   R_SVN_REVISION (from Rversion.h) = 89998
configure:   R session svn (R.version) = 89998 (should match Rversion.h for same R install)
configure:   (Branch 3 uses R_getRegisteredNamespace: undefined symbol usually means R headers are older than Rcpp expects, or a mismatched R/lib.)
configure: R version: 4.7.0 (svn: 89998)
configure: confirmed Rcpp package version 1.1.1.1.1 (library: /data/gannet/ripley/R/test-clang)
>> Rcpp Function.h branch (for Makevars) = 3  (see tools/rcpp_include.R stderr for conditions)
>> RCPP_CPPFLAGS    = '-I"/data/gannet/ripley/R/test-clang/Rcpp/include"'
** libs
using C compiler: ‘clang version 22.1.4 (https://github.com/llvm/llvm-project 35990504507d79e0b9deb809c8ee5e1b34ceef20)’
using C++ compiler: ‘clang version 22.1.4 (https://github.com/llvm/llvm-project 35990504507d79e0b9deb809c8ee5e1b34ceef20)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/glmbayes/src'
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c EnvelopeBuild.cpp -o EnvelopeBuild.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c EnvelopeBuild_Ind_Normal_Gamma.cpp -o EnvelopeBuild_Ind_Normal_Gamma.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c EnvelopeCentering.cpp -o EnvelopeCentering.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c EnvelopeDispersionBuild.cpp -o EnvelopeDispersionBuild.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c EnvelopeEval.cpp -o EnvelopeEval.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c EnvelopeOrchestrator.cpp -o EnvelopeOrchestrator.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c EnvelopeSize.cpp -o EnvelopeSize.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c EnvelopeSort.cpp -o EnvelopeSort.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c OpenCL_helper.cpp -o OpenCL_helper.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RcppExports.cpp -o RcppExports.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c Set_Grid.cpp -o Set_Grid.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c Set_LogP.cpp -o Set_LogP.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c bd0.c -o bd0.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c chebyshev.c -o chebyshev.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c configure_OpenCL.cpp -o configure_OpenCL.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c cuda_probe.cpp -o cuda_probe.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c dbinom.c -o dbinom.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c dgamma.c -o dgamma.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c dnorm.c -o dnorm.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c dpois.c -o dpois.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c export_wrappers.cpp -o export_wrappers.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c famfuncs_Gamma.cpp -o famfuncs_Gamma.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c famfuncs_binomial.cpp -o famfuncs_binomial.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c famfuncs_gaussian.cpp -o famfuncs_gaussian.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c famfuncs_poisson.cpp -o famfuncs_poisson.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c glmbayes_getRegisteredNamespace.cpp -o glmbayes_getRegisteredNamespace.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c invgamma_ct.cpp -o invgamma_ct.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c kernel_loader.cpp -o kernel_loader.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c kernel_runners.cpp -o kernel_runners.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c kernel_wrappers.cpp -o kernel_wrappers.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c lgamma.c -o lgamma.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c lgammacor.c -o lgammacor.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c log1p.c -o log1p.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c opencl_detect.cpp -o opencl_detect.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c pgamma.c -o pgamma.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c pnorm.c -o pnorm.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c progress_utils.cpp -o progress_utils.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c qgamma.c -o qgamma.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c rGammaGamma.cpp -o rGammaGamma.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c rGammaGaussian.cpp -o rGammaGaussian.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c rIndepNormalGammaReg.cpp -o rIndepNormalGammaReg.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c rNormalGLM.cpp -o rNormalGLM.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c rNormalGammaReg.cpp -o rNormalGammaReg.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c rNormalReg.cpp -o rNormalReg.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c rng_utils.cpp -o rng_utils.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I/data/gannet/ripley/R/test-clang/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c rnorm_ct.cpp -o rnorm_ct.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c stirlerr.c -o stirlerr.o
clang++-22 -stdlib=libc++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o glmbayes.so EnvelopeBuild.o EnvelopeBuild_Ind_Normal_Gamma.o EnvelopeCentering.o EnvelopeDispersionBuild.o EnvelopeEval.o EnvelopeOrchestrator.o EnvelopeSize.o EnvelopeSort.o OpenCL_helper.o RcppExports.o Set_Grid.o Set_LogP.o bd0.o chebyshev.o configure_OpenCL.o cuda_probe.o dbinom.o dgamma.o dnorm.o dpois.o export_wrappers.o famfuncs_Gamma.o famfuncs_binomial.o famfuncs_gaussian.o famfuncs_poisson.o glmbayes_getRegisteredNamespace.o invgamma_ct.o kernel_loader.o kernel_runners.o kernel_wrappers.o lgamma.o lgammacor.o log1p.o opencl_detect.o pgamma.o pnorm.o progress_utils.o qgamma.o rGammaGamma.o rGammaGaussian.o rIndepNormalGammaReg.o rNormalGLM.o rNormalGammaReg.o rNormalReg.o rng_utils.o rnorm_ct.o stirlerr.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm -L/data/gannet/ripley/R/test-clang/RcppParallel/lib -ltbb -ltbbmalloc -Wl,-rpath,/data/gannet/ripley/R/test-clang/RcppParallel/lib
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/glmbayes/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/glmbayes/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/glmbayes/src'
installing to /data/gannet/ripley/R/packages/tests-clang/glmbayes.Rcheck/00LOCK-glmbayes/00new/glmbayes/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (glmbayes)