* installing *source* package ‘glmSTARMA’ ...
** this is package ‘glmSTARMA’ version ‘1.1.0’
** package ‘glmSTARMA’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘clang version 22.1.8 (https://github.com/llvm/llvm-project ca7933e47d3a3451d81e72ac174dcb5aa28b59d1)’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/glmSTARMA/src'
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/roptim/include' -I'/data/gannet/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/roptim/include' -I'/data/gannet/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c covariates.cpp -o covariates.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/roptim/include' -I'/data/gannet/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c dglmstarma.cpp -o dglmstarma.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/roptim/include' -I'/data/gannet/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c family.cpp -o family.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/roptim/include' -I'/data/gannet/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c family_binomial.cpp -o family_binomial.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/roptim/include' -I'/data/gannet/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c family_gamma.cpp -o family_gamma.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/roptim/include' -I'/data/gannet/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c family_inverse_gauss.cpp -o family_inverse_gauss.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/roptim/include' -I'/data/gannet/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c family_negative_binomial.cpp -o family_negative_binomial.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/roptim/include' -I'/data/gannet/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c family_normal.cpp -o family_normal.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/roptim/include' -I'/data/gannet/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c family_poisson.cpp -o family_poisson.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/roptim/include' -I'/data/gannet/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c family_quasibinomial.cpp -o family_quasibinomial.o
In file included from family_gamma.cpp:10:
In file included from ./glmstarma.h:26:
./covariates.h:65:18: warning: private field 'dim' is not used [-Wunused-private-field]
65 | unsigned int dim;
| ^
In file included from family_binomial.cpp:10:
In file included from ./glmstarma.h:26:
./covariates.h:65:18: warning: private field 'dim' is not used [-Wunused-private-field]
65 | unsigned int dim;
| ^
In file included from family_negative_binomial.cpp:10:
In file included from ./glmstarma.h:26:
./covariates.h:65:18: warning: private field 'dim' is not used [-Wunused-private-field]
65 | unsigned int dim;
| ^
In file included from family_normal.cpp:10:
In file included from ./glmstarma.h:26:
./covariates.h:65:18: warning: private field 'dim' is not used [-Wunused-private-field]
65 | unsigned int dim;
| ^
In file included from dglmstarma.cpp:10:
In file included from ./glmstarma.h:26:
./covariates.h:65:18: warning: private field 'dim' is not used [-Wunused-private-field]
65 | unsigned int dim;
| ^
In file included from RcppExports.cpp:4:
In file included from ./glmSTARMA_types.h:1:
In file included from ./glmstarma.h:26:
./covariates.h:65:18: warning: private field 'dim' is not used [-Wunused-private-field]
65 | unsigned int dim;
| ^
In file included from family_inverse_gauss.cpp:10:
In file included from ./glmstarma.h:26:
./covariates.h:65:18: warning: private field 'dim' is not used [-Wunused-private-field]
65 | unsigned int dim;
| ^
In file included from family.cpp:12:
In file included from ./glmstarma.h:26:
./covariates.h:65:18: warning: private field 'dim' is not used [-Wunused-private-field]
65 | unsigned int dim;
| ^
In file included from covariates.cpp:13:
In file included from ./glmstarma.h:26:
./covariates.h:65:18: warning: private field 'dim' is not used [-Wunused-private-field]
65 | unsigned int dim;
| ^
./covariates.h:127:15: warning: private field 'burn_in' is not used [-Wunused-private-field]
127 | const int burn_in;
| ^
In file included from family_poisson.cpp:10:
In file included from ./glmstarma.h:26:
./covariates.h:65:18: warning: private field 'dim' is not used [-Wunused-private-field]
65 | unsigned int dim;
| ^
1 warning generated.
1 warning generated.
1 warning generated.
1 warning generated.
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/roptim/include' -I'/data/gannet/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c family_quasipoisson.cpp -o family_quasipoisson.o
1 warning generated.
1 warning generated.
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/roptim/include' -I'/data/gannet/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fitting.cpp -o fitting.o
2 warnings generated.
1 warning generated.
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/roptim/include' -I'/data/gannet/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c glmstarma.cpp -o glmstarma.o
1 warning generated.
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/roptim/include' -I'/data/gannet/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c model.cpp -o model.o
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/roptim/include' -I'/data/gannet/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c neighbors.cpp -o neighbors.o
In file included from family_quasibinomial.cpp:10:
In file included from ./glmstarma.h:26:
./covariates.h:65:18: warning: private field 'dim' is not used [-Wunused-private-field]
65 | unsigned int dim;
| ^
1 warning generated.
1 warning generated.
In file included from family_quasipoisson.cpp:10:
In file included from ./glmstarma.h:26:
./covariates.h:65:18: warning: private field 'dim' is not used [-Wunused-private-field]
65 | unsigned int dim;
| ^
In file included from fitting.cpp:12:
In file included from ./glmstarma.h:26:
./covariates.h:65:18: warning: private field 'dim' is not used [-Wunused-private-field]
65 | unsigned int dim;
| ^
In file included from glmstarma.cpp:13:
In file included from ./glmstarma.h:26:
./covariates.h:65:18: warning: private field 'dim' is not used [-Wunused-private-field]
65 | unsigned int dim;
| ^
In file included from model.cpp:10:
In file included from ./glmstarma.h:26:
./covariates.h:65:18: warning: private field 'dim' is not used [-Wunused-private-field]
65 | unsigned int dim;
| ^
1 warning generated.
1 warning generated.
1 warning generated.
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/roptim/include' -I'/data/gannet/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c predict.cpp -o predict.o
In file included from neighbors.cpp:10:
In file included from ./glmstarma.h:26:
./covariates.h:65:18: warning: private field 'dim' is not used [-Wunused-private-field]
65 | unsigned int dim;
| ^
1 warning generated.
clang++-22 -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/roptim/include' -I'/data/gannet/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c simulation.cpp -o simulation.o
1 warning generated.
In file included from predict.cpp:10:
In file included from ./glmstarma.h:26:
./covariates.h:65:18: warning: private field 'dim' is not used [-Wunused-private-field]
65 | unsigned int dim;
| ^
In file included from simulation.cpp:10:
In file included from ./glmstarma.h:26:
./covariates.h:65:18: warning: private field 'dim' is not used [-Wunused-private-field]
65 | unsigned int dim;
| ^
1 warning generated.
1 warning generated.
clang++-22 -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o glmSTARMA.so RcppExports.o covariates.o dglmstarma.o family.o family_binomial.o family_gamma.o family_inverse_gauss.o family_negative_binomial.o family_normal.o family_poisson.o family_quasibinomial.o family_quasipoisson.o fitting.o glmstarma.o model.o neighbors.o predict.o simulation.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/glmSTARMA/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/glmSTARMA/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/glmSTARMA/src'
installing to /data/gannet/ripley/R/packages/tests-clang/glmSTARMA.Rcheck/00LOCK-glmSTARMA/00new/glmSTARMA/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (glmSTARMA)