* installing *source* package ‘gkwreg’ ...
** this is package ‘gkwreg’ version ‘1.0.10’
** package ‘gkwreg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 20.1.7’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/gkwreg/src'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RcppExports.cpp -o RcppExports.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c gkwgetstartvalues.cpp -o gkwgetstartvalues.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c gkwmle.cpp -o gkwmle.o
In file included from RcppExports.cpp:5:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from RcppExports.cpp:5:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from RcppExports.cpp:5:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from RcppExports.cpp:5:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c gkwreg-predict-resid.cpp -o gkwreg-predict-resid.o
5 warnings generated.
gkwmle.cpp:17236:9: warning: variable 'trimmed_mean' set but not used [-Wunused-but-set-variable]
 17236 |  double trimmed_mean = 0.0;
       |         ^
1 warning generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o gkwreg.so RcppExports.o gkwgetstartvalues.o gkwmle.o gkwreg-predict-resid.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/gkwreg/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/gkwreg/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/gkwreg/src'
installing to /data/gannet/ripley/R/packages/tests-clang/gkwreg.Rcheck/00LOCK-gkwreg/00new/gkwreg/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
using C++ compiler: ‘clang version 20.1.7’
make[1]: Entering directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwbetareg_compile_20250713010308'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_gkwbetareg  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwbetareg_compile_20250713010308/gkwbetareg.cpp -o /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwbetareg_compile_20250713010308/gkwbetareg.o
In file included from /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwbetareg_compile_20250713010308/gkwbetareg.cpp:17:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/SparseCore:61:
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwbetareg_compile_20250713010308/gkwbetareg.cpp:17:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/SparseLU:35:
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
3 warnings generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwbetareg_compile_20250713010308/gkwbetareg.so /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwbetareg_compile_20250713010308/gkwbetareg.o
make[1]: Leaving directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwbetareg_compile_20250713010308'
make[1]: Entering directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwbetareg_compile_20250713010308'
make[1]: Leaving directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwbetareg_compile_20250713010308'
using C++ compiler: ‘clang version 20.1.7’
make[1]: Entering directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/bkwreg_compile_20250713010511'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_bkwreg  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/bkwreg_compile_20250713010511/bkwreg.cpp -o /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/bkwreg_compile_20250713010511/bkwreg.o
In file included from /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/bkwreg_compile_20250713010511/bkwreg.cpp:13:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/SparseCore:61:
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/bkwreg_compile_20250713010511/bkwreg.cpp:13:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/SparseLU:35:
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
3 warnings generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/bkwreg_compile_20250713010511/bkwreg.so /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/bkwreg_compile_20250713010511/bkwreg.o
make[1]: Leaving directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/bkwreg_compile_20250713010511'
make[1]: Entering directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/bkwreg_compile_20250713010511'
make[1]: Leaving directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/bkwreg_compile_20250713010511'
using C++ compiler: ‘clang version 20.1.7’
make[1]: Entering directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/ekwreg_compile_20250713010721'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_ekwreg  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/ekwreg_compile_20250713010721/ekwreg.cpp -o /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/ekwreg_compile_20250713010721/ekwreg.o
In file included from /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/ekwreg_compile_20250713010721/ekwreg.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/SparseCore:61:
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/ekwreg_compile_20250713010721/ekwreg.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/SparseLU:35:
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
3 warnings generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/ekwreg_compile_20250713010721/ekwreg.so /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/ekwreg_compile_20250713010721/ekwreg.o
make[1]: Leaving directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/ekwreg_compile_20250713010721'
make[1]: Entering directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/ekwreg_compile_20250713010721'
make[1]: Leaving directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/ekwreg_compile_20250713010721'
using C++ compiler: ‘clang version 20.1.7’
make[1]: Entering directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwmletmb_compile_20250713010927'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_gkwmletmb  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwmletmb_compile_20250713010927/gkwmletmb.cpp -o /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwmletmb_compile_20250713010927/gkwmletmb.o
In file included from /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwmletmb_compile_20250713010927/gkwmletmb.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/SparseCore:61:
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwmletmb_compile_20250713010927/gkwmletmb.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/SparseLU:35:
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
3 warnings generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwmletmb_compile_20250713010927/gkwmletmb.so /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwmletmb_compile_20250713010927/gkwmletmb.o -fopenmp
make[1]: Leaving directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwmletmb_compile_20250713010927'
make[1]: Entering directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwmletmb_compile_20250713010927'
make[1]: Leaving directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwmletmb_compile_20250713010927'
using C++ compiler: ‘clang version 20.1.7’
make[1]: Entering directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwreg_compile_20250713011134'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_gkwreg  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwreg_compile_20250713011134/gkwreg.cpp -o /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwreg_compile_20250713011134/gkwreg.o
In file included from /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwreg_compile_20250713011134/gkwreg.cpp:12:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/SparseCore:61:
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwreg_compile_20250713011134/gkwreg.cpp:12:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/SparseLU:35:
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
3 warnings generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwreg_compile_20250713011134/gkwreg.so /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwreg_compile_20250713011134/gkwreg.o
make[1]: Leaving directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwreg_compile_20250713011134'
make[1]: Entering directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwreg_compile_20250713011134'
make[1]: Leaving directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/gkwreg_compile_20250713011134'
using C++ compiler: ‘clang version 20.1.7’
make[1]: Entering directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/kkwreg_compile_20250713011323'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_kkwreg  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/kkwreg_compile_20250713011323/kkwreg.cpp -o /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/kkwreg_compile_20250713011323/kkwreg.o
In file included from /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/kkwreg_compile_20250713011323/kkwreg.cpp:16:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/SparseCore:61:
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/kkwreg_compile_20250713011323/kkwreg.cpp:16:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/SparseLU:35:
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
3 warnings generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/kkwreg_compile_20250713011323/kkwreg.so /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/kkwreg_compile_20250713011323/kkwreg.o
make[1]: Leaving directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/kkwreg_compile_20250713011323'
make[1]: Entering directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/kkwreg_compile_20250713011323'
make[1]: Leaving directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/kkwreg_compile_20250713011323'
using C++ compiler: ‘clang version 20.1.7’
make[1]: Entering directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/kwreg_compile_20250713011523'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_kwreg  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/kwreg_compile_20250713011523/kwreg.cpp -o /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/kwreg_compile_20250713011523/kwreg.o
In file included from /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/kwreg_compile_20250713011523/kwreg.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/SparseCore:61:
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/kwreg_compile_20250713011523/kwreg.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/SparseLU:35:
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
3 warnings generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/kwreg_compile_20250713011523/kwreg.so /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/kwreg_compile_20250713011523/kwreg.o
make[1]: Leaving directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/kwreg_compile_20250713011523'
make[1]: Entering directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/kwreg_compile_20250713011523'
make[1]: Leaving directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/kwreg_compile_20250713011523'
using C++ compiler: ‘clang version 20.1.7’
make[1]: Entering directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/mcreg_compile_20250713011721'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_mcreg  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/mcreg_compile_20250713011721/mcreg.cpp -o /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/mcreg_compile_20250713011721/mcreg.o
In file included from /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/mcreg_compile_20250713011721/mcreg.cpp:17:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/SparseCore:61:
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/mcreg_compile_20250713011721/mcreg.cpp:17:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/SparseLU:35:
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/tmp/Rtmp8kCFLa/working_dir/RtmpISNlNH/RLIBS_30059f3dae973c/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
3 warnings generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/mcreg_compile_20250713011721/mcreg.so /tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/mcreg_compile_20250713011721/mcreg.o
make[1]: Leaving directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/mcreg_compile_20250713011721'
make[1]: Entering directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/mcreg_compile_20250713011721'
make[1]: Leaving directory '/tmp/Rtmp8kCFLa/working_dir/Rtmp3o8tqG/mcreg_compile_20250713011721'
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gkwreg)