• using R Under development (unstable) (2025-11-14 r89021)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 21.1.5     flang version 21.1.5
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘germinationmetrics/DESCRIPTION’ ... OK
• this is package ‘germinationmetrics’ version ‘0.1.8’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘germinationmetrics’ can be installed ... [23s/33s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [35s/49s] OK
• checking Rd files ... [11s/18s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [11s/16s] OK   Running ‘testthat.R’ [11s/16s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [70s/92s] OK
• checking PDF version of manual ... [10s/15s] OK
• checking HTML version of manual ... [10s/17s] NOTE Found the following HTML validation problems: germinationmetrics.html:272:1 (EmergenceRateIndex.Rd:53): Warning: <script> anchor "MathJax-script" already defined germinationmetrics.html:513:2 (FirstGermTime.Rd:54): Warning: <script> anchor "MathJax-script" already defined germinationmetrics.html:716:63 (FourPHFfit.Rd:84): Warning: <script> anchor "MathJax-script" already defined germinationmetrics.html:1154:30 (GermIndex.Rd:39): Warning: <script> anchor "MathJax-script" already defined germinationmetrics.html:1344:14 (GermPercent.Rd:38): Warning: <script> anchor "MathJax-script" already defined germinationmetrics.html:1430:2 (GermSpeed.Rd:72): Warning: <script> anchor "MathJax-script" already defined germinationmetrics.html:1678:2 (GermSynchrony.Rd:36): Warning: <script> anchor "MathJax-script" already defined germinationmetrics.html:1797:1 (GermValue.Rd:51): Warning: <script> anchor "MathJax-script" already defined germinationmetrics.html:1997:2 (MeanGermPercent.Rd:43): Warning: <script> anchor "MathJax-script" already defined germinationmetrics.html:2139:2 (MeanGermRate.Rd:70): Warning: <script> anchor "MathJax-script" already defined germinationmetrics.html:2351:1 (MeanGermTime.Rd:53): Warning: <script> anchor "MathJax-script" already defined germinationmetrics.html:2531:24 (TimsonsIndex.Rd:54): Warning: <script> anchor "MathJax-script" already defined germinationmetrics.html:2785:34 (WeightGermPercent.Rd:28): Warning: <script> anchor "MathJax-script" already defined germinationmetrics.html:2996:59 (germination.indices.Rd:245): Warning: <script> anchor "MathJax-script" already defined germinationmetrics.html:3523:22 (plot.FourPHFfit.Rd:65): Warning: <script> anchor "MathJax-script" already defined germinationmetrics.html:3676:11 (plot.FourPHFfit.bulk.Rd:63): Warning: <script> anchor "MathJax-script" already defined germinationmetrics.html:3818:61 (t50.Rd:28): Warning: <script> anchor "MathJax-script" already defined
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 NOTE