Install log for 'geosmooth'

* installing *source* package ‘geosmooth’ ...
** this is package ‘geosmooth’ version ‘0.1.0’
** package ‘geosmooth’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘clang version 23.1.1’
using C++17
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/geosmooth/src'
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c geosmooth_native_stub.cpp -o geosmooth_native_stub.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c harmonic_smoothing_native.cpp -o harmonic_smoothing_native.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c local_pca_charts.cpp -o local_pca_charts.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c local_pca_charts_rcpp.cpp -o local_pca_charts_rcpp.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c local_second_order_svd_charts.cpp -o local_second_order_svd_charts.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c local_second_order_svd_charts_rcpp.cpp -o local_second_order_svd_charts_rcpp.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c lps_rcpp.cpp -o lps_rcpp.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c metric_graph_lowpass.cpp -o metric_graph_lowpass.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c ps_lps_cache_rcpp.cpp -o ps_lps_cache_rcpp.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c ssrhe_hessian_energy.cpp -o ssrhe_hessian_energy.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c ANN/ANN.cpp -o ANN/ANN.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c ANN/bd_fix_rad_search.cpp -o ANN/bd_fix_rad_search.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c ANN/bd_pr_search.cpp -o ANN/bd_pr_search.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c ANN/bd_search.cpp -o ANN/bd_search.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c ANN/bd_tree.cpp -o ANN/bd_tree.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c ANN/kd_dump.cpp -o ANN/kd_dump.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c ANN/kd_fix_rad_search.cpp -o ANN/kd_fix_rad_search.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c ANN/kd_pr_search.cpp -o ANN/kd_pr_search.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c ANN/kd_search.cpp -o ANN/kd_search.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c ANN/kd_split.cpp -o ANN/kd_split.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c ANN/kd_tree.cpp -o ANN/kd_tree.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c ANN/kd_util.cpp -o ANN/kd_util.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang23/lib -L/usr/local/clang23/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o geosmooth.so geosmooth_native_stub.o harmonic_smoothing_native.o local_pca_charts.o local_pca_charts_rcpp.o local_second_order_svd_charts.o local_second_order_svd_charts_rcpp.o lps_rcpp.o metric_graph_lowpass.o ps_lps_cache_rcpp.o ssrhe_hessian_energy.o ANN/ANN.o ANN/bd_fix_rad_search.o ANN/bd_pr_search.o ANN/bd_search.o ANN/bd_tree.o ANN/kd_dump.o ANN/kd_fix_rad_search.o ANN/kd_pr_search.o ANN/kd_search.o ANN/kd_split.o ANN/kd_tree.o ANN/kd_util.o RcppExports.o -L/data/localhost/ripley/R/R-clang/lib -lRlapack -L/data/localhost/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/geosmooth/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/geosmooth/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/geosmooth/src'
installing to /data/localhost/ripley/R/packages/tests-clang/geosmooth.Rcheck/00LOCK-geosmooth/00new/geosmooth/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geosmooth)