* installing *source* package ‘geoBayes’ ...
** this is package ‘geoBayes’ version ‘0.7.8’
** package ‘geoBayes’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 23.1.1’
using Fortran compiler: ‘flang version 23.1.1’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/geoBayes/src'
/usr/local/clang23/bin/clang-23 -std=gnu23 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c auxfcns.c -o auxfcns.o
/usr/local/clang23/bin/clang-23 -std=gnu23 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c msg.c -o msg.o
/usr/local/clang23/bin/clang-23 -std=gnu23 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c register_dll.c -o register_dll.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c interfaces.f90 -o interfaces.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c msgmc.f90 -o msgmc.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c flogsumexp.f90 -o flogsumexp.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c lbfgsbmod.f90 -o lbfgsbmod.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c cor_fcns.f90 -o cor_fcns.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c betaprior.f90 -o betaprior.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c tcdfder.f90 -o tcdfder.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c linkdz.f90 -o linkdz.o
tcdfder.f90:790:43: warning: Default real literal in REAL(8) context might need a kind suffix, as its rounded value 2.380952425301074981689453125e-2_4 is inexact [-Wreal-constant-widening]
/0.1666666667d0, -0.03333333333d0, 0.02380952381, -0.03333333333/
^^^^^^^^^^^^^
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c bmargin.f90 -o bmargin.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c modelfcns_link.f90 -o modelfcns_link.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c modelfcns_pdfy.f90 -o modelfcns_pdfy.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c bfse.f90 -o bfse.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c covfun.f90 -o covfun.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c linkfcn.f90 -o linkfcn.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c modelfcns.f90 -o modelfcns.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c spcorr.f90 -o spcorr.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c transformz.f90 -o transformz.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c seeb.f90 -o seeb.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c llikderiv.f90 -o llikderiv.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c pdfy.f90 -o pdfy.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c pdfdz.f90 -o pdfdz.o
pdfdz.f90:171:34: warning: Value of local variable 'tmp' is never used [-Wunused-variable]
double precision par, pardz, tmp
^^^
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c mcmcfcns.f90 -o mcmcfcns.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c calcbd_fcns.f90 -o calcbd_fcns.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c mcsp2.f90 -o mcsp2.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c bfsp2.f90 -o bfsp2.o
bfsp2.f90:32:17: warning: Value of local variable 'm' is never used [-Wunused-variable]
integer i, j, m
^
bfsp2.f90:33:20: warning: Value of local variable 'zsam' is never used [-Wunused-variable]
double precision zsam(n), logNN2(kg)
^^^^
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c calcb2.f90 -o calcb2.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c calcbd.f90 -o calcbd.o
calcbd.f90:29:38: warning: Value of local variable 'jsam' is never used [-Wunused-variable]
double precision zsam(n), msam(n), jsam(n), sam(n), dlogpy(n), dzdnu(n), &
^^^^
calcbd.f90:29:66: warning: Value of local variable 'dzdnu' is never used [-Wunused-variable]
double precision zsam(n), msam(n), jsam(n), sam(n), dlogpy(n), dzdnu(n), &
^^^^^
calcbd.f90:30:17: warning: Value of local variable 'djsam' is never used [-Wunused-variable]
dmudnu(n), djsam(n), lpdfz, lpdfy
^^^^^
calcbd.f90:31:24: warning: Value of local variable 'dz' is never used [-Wunused-variable]
double precision dy, dz, dj, dlglkdnu(Ntot), dlglkdphi(Ntot), &
^^
calcbd.f90:31:28: warning: Value of local variable 'dj' is never used [-Wunused-variable]
double precision dy, dz, dj, dlglkdnu(Ntot), dlglkdphi(Ntot), &
^^
calcbd.f90:125:20: warning: Value of local variable 'ymm' is never used [-Wunused-variable]
double precision ymm(n), ymml(n)
^^^
calcbd.f90:125:28: warning: Value of local variable 'ymml' is never used [-Wunused-variable]
double precision ymm(n), ymml(n)
^^^^
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c linkcalc.f90 -o linkcalc.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c llik.f90 -o llik.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c mcspz0.f90 -o mcspz0.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c skelpnts.f90 -o skelpnts.o
skelpnts.f90:33:20: warning: Value of uninitialized local variable 'oplb' is used but never defined [-Wused-undefined-variable]
double precision oplb(n), opub(n), opfac, oppgt
^^^^
skelpnts.f90:33:29: warning: Value of uninitialized local variable 'opub' is used but never defined [-Wused-undefined-variable]
double precision oplb(n), opub(n), opfac, oppgt
^^^^
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c llikmc.f90 -o llikmc.o
/usr/local/clang23/bin/flang-23 -fpic -O2 -pedantic -c mcsp_mala.f90 -o mcsp_mala.o
/usr/local/clang23/bin/clang-23 -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang23/lib -L/usr/local/clang23/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o geoBayes.so auxfcns.o msg.o register_dll.o interfaces.o msgmc.o flogsumexp.o lbfgsbmod.o covfun.o betaprior.o pdfy.o tcdfder.o pdfdz.o linkdz.o bmargin.o linkfcn.o modelfcns_link.o modelfcns_pdfy.o modelfcns.o mcmcfcns.o cor_fcns.o calcbd_fcns.o mcsp2.o bfsp2.o calcb2.o calcbd.o linkcalc.o llik.o mcspz0.o skelpnts.o spcorr.o bfse.o transformz.o seeb.o llikderiv.o llikmc.o mcsp_mala.o -L/data/localhost/ripley/R/R-clang/lib -lRlapack -L/data/localhost/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/geoBayes/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/geoBayes/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/geoBayes/src'
installing to /data/localhost/ripley/R/packages/tests-clang/geoBayes.Rcheck/00LOCK-geoBayes/00new/geoBayes/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geoBayes)