* installing *source* package ‘geepack’ ...
** package ‘geepack’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
using C++ compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/geepack/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c famstr.cc -o famstr.o
famstr.cc:1:17: warning: using directive refers to implicitly-defined namespace 'std'
1 | using namespace std;
| ^
In file included from famstr.cc:3:
../inst/include/tntsupp.h:4:17: warning: using directive refers to implicitly-defined namespace 'std'
4 | using namespace std;
| ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c gee2.cc -o gee2.o
In file included from gee2.cc:17:
In file included from ../inst/include/gee2.h:4:
../inst/include/tntsupp.h:4:17: warning: using directive refers to implicitly-defined namespace 'std'
4 | using namespace std;
| ^
../inst/include/tntsupp.h:260:15: warning: unused variable 'MN' [-Wunused-variable]
260 | Subscript MN = M*N;
| ^~
../inst/include/tntsupp.h:260:15: warning: unused variable 'MN' [-Wunused-variable]
260 | Subscript MN = M*N;
| ^~
3 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c geesubs.cc -o geesubs.o
geesubs.cc:10:17: warning: using directive refers to implicitly-defined namespace 'std'
10 | using namespace std;
| ^
In file included from geesubs.cc:12:
../inst/include/tntsupp.h:4:17: warning: using directive refers to implicitly-defined namespace 'std'
4 | using namespace std;
| ^
../inst/include/tntsupp.h:260:15: warning: unused variable 'MN' [-Wunused-variable]
260 | Subscript MN = M*N;
| ^~
2 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c inter.cc -o inter.o
inter.cc:1:17: warning: using directive refers to implicitly-defined namespace 'std'
1 | using namespace std;
| ^
In file included from inter.cc:3:
../inst/include/tntsupp.h:4:17: warning: using directive refers to implicitly-defined namespace 'std'
4 | using namespace std;
| ^
3 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c ordgee.cc -o ordgee.o
In file included from ordgee.cc:18:
In file included from ../inst/include/ordgee.h:5:
../inst/include/tntsupp.h:4:17: warning: using directive refers to implicitly-defined namespace 'std'
4 | using namespace std;
| ^
../inst/include/tntsupp.h:260:15: warning: unused variable 'MN' [-Wunused-variable]
260 | Subscript MN = M*N;
| ^~
3 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c param.cc -o param.o
param.cc:1:17: warning: using directive refers to implicitly-defined namespace 'std'
1 | using namespace std;
| ^
In file included from param.cc:3:
../inst/include/tntsupp.h:4:17: warning: using directive refers to implicitly-defined namespace 'std'
4 | using namespace std;
| ^
../inst/include/tntsupp.h:260:15: warning: unused variable 'MN' [-Wunused-variable]
260 | Subscript MN = M*N;
| ^~
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c utils.cc -o utils.o
../inst/include/tntsupp.h:260:15: warning: unused variable 'MN' [-Wunused-variable]
260 | Subscript MN = M*N;
| ^~
3 warnings generated.
In file included from utils.cc:6:
../inst/include/tntsupp.h:260:15: warning: unused variable 'MN' [-Wunused-variable]
260 | Subscript MN = M*N;
| ^~
1 warning generated.
2 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o geepack.so famstr.o gee2.o geesubs.o init.o inter.o ordgee.o param.o utils.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/geepack/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/geepack/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/geepack/src'
installing to /data/gannet/ripley/R/packages/tests-clang/geepack.Rcheck/00LOCK-geepack/00new/geepack/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geepack)