* installing *source* package ‘gedi2’ ... ** this is package ‘gedi2’ version ‘2.3.4’ ** package ‘gedi2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 23.1.1’ make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/gedi2/src' /usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c RcppExports.cpp -o RcppExports.o /usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c gedi_core.cpp -o gedi_core.o /usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c gedi_differential.cpp -o gedi_differential.o In file included from RcppExports.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RcppExports.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RcppExports.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from RcppExports.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from gedi_core.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from gedi_core.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from gedi_core.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from gedi_core.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from gedi_differential.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from gedi_differential.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from gedi_differential.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from gedi_differential.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. /usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c gedi_dimred.cpp -o gedi_dimred.o /usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c gedi_imputation.cpp -o gedi_imputation.o 5 warnings generated. In file included from gedi_dimred.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from gedi_dimred.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from gedi_dimred.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from gedi_imputation.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from gedi_imputation.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from gedi_dimred.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from gedi_imputation.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from gedi_imputation.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ /usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c gedi_plots.cpp -o gedi_plots.o 5 warnings generated. /usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c gedi_projections.cpp -o gedi_projections.o /usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c matrix_oprations.cpp -o matrix_oprations.o In file included from gedi_plots.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from gedi_plots.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from gedi_plots.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from gedi_plots.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from matrix_oprations.cpp:1: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from matrix_oprations.cpp:1: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from matrix_oprations.cpp:1: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from matrix_oprations.cpp:1: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from gedi_projections.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from gedi_projections.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from gedi_projections.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from gedi_projections.cpp:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. 5 warnings generated. 5 warnings generated. 5 warnings generated. 5 warnings generated. /usr/local/clang23/bin/clang++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang23/lib -L/usr/local/clang23/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o gedi2.so RcppExports.o gedi_core.o gedi_differential.o gedi_dimred.o gedi_imputation.o gedi_plots.o gedi_projections.o matrix_oprations.o -fopenmp -L/data/localhost/ripley/R/R-clang/lib -lRlapack -L/data/localhost/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/gedi2/src' make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/gedi2/src' make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/gedi2/src' installing to /data/localhost/ripley/R/packages/tests-clang/gedi2.Rcheck/00LOCK-gedi2/00new/gedi2/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gedi2)