* installing *source* package ‘gamstransfer’ ... ** this is package ‘gamstransfer’ version ‘3.0.8’ ** package ‘gamstransfer’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... /usr/local/clang21/bin/clang -std=gnu23 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether /usr/local/clang21/bin/clang -std=gnu23 accepts -g... yes checking for /usr/local/clang21/bin/clang -std=gnu23 option to enable C11 features... -std=gnu11 checking for compress in -lz... yes checking for uncompress in -lz... yes configure: creating ./config.status config.status: creating src/Makevars ** libs specified C++17 using C++ compiler: ‘clang version 21.1.8’ using C++17 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/gamstransfer/src' /usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c gdx/zlib/adler32.c -o gdx/zlib/adler32.o /usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c gdx/zlib/compress.c -o gdx/zlib/compress.o /usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c gdx/zlib/crc32.c -o gdx/zlib/crc32.o /usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c gdx/zlib/deflate.c -o gdx/zlib/deflate.o /usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c gdx/zlib/gzclose.c -o gdx/zlib/gzclose.o /usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c gdx/zlib/gzlib.c -o gdx/zlib/gzlib.o /usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c gdx/zlib/gzread.c -o gdx/zlib/gzread.o /usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c gdx/zlib/gzwrite.c -o gdx/zlib/gzwrite.o /usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c gdx/zlib/infback.c -o gdx/zlib/infback.o /usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c gdx/zlib/inffast.c -o gdx/zlib/inffast.o /usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c gdx/zlib/inflate.c -o gdx/zlib/inflate.o /usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c gdx/zlib/inftrees.c -o gdx/zlib/inftrees.o /usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c gdx/zlib/trees.c -o gdx/zlib/trees.o /usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c gdx/zlib/uncompr.c -o gdx/zlib/uncompr.o /usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c gdx/zlib/zutil.c -o gdx/zlib/zutil.o /usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c gdx/src/rtl/dtoaLoc.c -o gdx/src/rtl/dtoaLoc.o /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -DNDEBUG -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gdx/src/rtl/p3io.cpp -o gdx/src/rtl/p3io.o /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -DNDEBUG -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gdx/src/rtl/p3utils.cpp -o gdx/src/rtl/p3utils.o /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -DNDEBUG -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gdx/src/rtl/sysutils_p3.cpp -o gdx/src/rtl/sysutils_p3.o /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -DNDEBUG -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gdx/src/rtl/system_p3.cpp -o gdx/src/rtl/system_p3.o /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -DNDEBUG -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gdx/src/rtl/p3platform.cpp -o gdx/src/rtl/p3platform.o /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -DNDEBUG -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gdx/src/rtl/math_p3.cpp -o gdx/src/rtl/math_p3.o /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -DNDEBUG -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gdx/src/gdlib/gmsstrm.cpp -o gdx/src/gdlib/gmsstrm.o /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -DNDEBUG -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gdx/src/gdlib/utils.cpp -o gdx/src/gdlib/utils.o /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -DNDEBUG -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gdx/src/gdlib/strutilx.cpp -o gdx/src/gdlib/strutilx.o /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -DNDEBUG -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gdx/src/gxfile.cpp -o gdx/src/gxfile.o /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -DNDEBUG -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c Read.cpp -o Read.o /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -DNDEBUG -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c Write.cpp -o Write.o /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -DNDEBUG -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c Utilities.cpp -o Utilities.o /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./gdx/src -I./gdx/generated -I./gdx/src/gdlib -I./gdx/src/global -I./gdx/src/rtl -I./gdx/src/zlib -I. -DZ_HAVE_UNISTD_H -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -DNDEBUG -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o /usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o gamstransfer.so gdx/zlib/adler32.o gdx/zlib/compress.o gdx/zlib/crc32.o gdx/zlib/deflate.o gdx/zlib/gzclose.o gdx/zlib/gzlib.o gdx/zlib/gzread.o gdx/zlib/gzwrite.o gdx/zlib/infback.o gdx/zlib/inffast.o gdx/zlib/inflate.o gdx/zlib/inftrees.o gdx/zlib/trees.o gdx/zlib/uncompr.o gdx/zlib/zutil.o gdx/src/rtl/dtoaLoc.o gdx/src/rtl/p3io.o gdx/src/rtl/p3utils.o gdx/src/rtl/sysutils_p3.o gdx/src/rtl/system_p3.o gdx/src/rtl/p3platform.o gdx/src/rtl/math_p3.o gdx/src/gdlib/gmsstrm.o gdx/src/gdlib/utils.o gdx/src/gdlib/strutilx.o gdx/src/gxfile.o Read.o Write.o Utilities.o RcppExports.o -ldl -lpthread -lz make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/gamstransfer/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/gamstransfer/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/gamstransfer/src' installing to /data/gannet/ripley/R/packages/tests-clang/gamstransfer.Rcheck/00LOCK-gamstransfer/00new/gamstransfer/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gamstransfer)