* installing *source* package ‘gRim’ ...
** package ‘gRim’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.0rc’
using C++ compiler: ‘clang version 18.1.0rc’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/gRim/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gRbase/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gRbase/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c _utils_mat.c -o _utils_mat.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gRbase/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c _utils_print.c -o _utils_print.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gRbase/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c fit2way.cpp -o fit2way.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gRbase/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c ggmfit.c -o ggmfit.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gRbase/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c init.c -o init.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/gRbase/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c parm_conversion.cpp -o parm_conversion.o
In file included from fit2way.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/gRbase/include/gRbase.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:540:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from fit2way.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/gRbase/include/gRbase.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:2:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/LU:47:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from fit2way.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/gRbase/include/gRbase.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:12:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Jacobi:29:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from fit2way.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/gRbase/include/gRbase.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:43:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from fit2way.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/gRbase/include/gRbase.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/QR:15:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Householder:27:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from fit2way.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/gRbase/include/gRbase.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/QR:48:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from fit2way.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/gRbase/include/gRbase.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:5:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SVD:48:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from fit2way.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/gRbase/include/gRbase.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:6:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Geometry:58:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from fit2way.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/gRbase/include/gRbase.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Eigenvalues:58:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from fit2way.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/gRbase/include/gRbase.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from fit2way.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/gRbase/include/gRbase.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:66:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from fit2way.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/gRbase/include/gRbase.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:71:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from fit2way.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/gRbase/include/gRbase.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCholesky:43:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from fit2way.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/gRbase/include/gRbase.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:33:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from fit2way.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/gRbase/include/gRbase.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:32:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseQR:34:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from fit2way.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/gRbase/include/gRbase.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:33:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from fit2way.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/gRbase/include/gRbase.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from fit2way.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/gRbase/include/gRbase.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:36:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from fit2way.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/gRbase/include/gRbase.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  239 |   int count = 0;
      |       ^
In file included from fit2way.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/gRbase/include/gRbase.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
21 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o gRim.so RcppExports.o _utils_mat.o _utils_print.o fit2way.o ggmfit.o init.o parm_conversion.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/gRim/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/gRim/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/gRim/src'
installing to /data/gannet/ripley/R/packages/tests-clang/gRim.Rcheck/00LOCK-gRim/00new/gRim/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gRim)