- using R Under development (unstable) (2025-09-01 r88761)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 21.1.0
flang version 21.1.0
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘fuzzyRankTests/DESCRIPTION’ ... OK
- this is package ‘fuzzyRankTests’ version ‘0.4’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘fuzzyRankTests’ can be installed ... OK
See the install log for details.
- used C compiler: ‘clang version 21.1.0’
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking examples ... OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... NOTE
Running ‘ranksum.R’
Comparing ‘ranksum.Rout’ to ‘ranksum.Rout.save’ ...34c34
< Wilcoxon rank sum exact test
---
> Wilcoxon rank sum test with continuity correction
37c37
< W = 8, p-value = 0.0053
---
> W = 8, p-value = 0.0076
39a40,41
> Warning message:
> In wilcox.test.default(x, y) : cannot compute exact p-value with ties
64c66
< Wilcoxon rank sum exact test
---
> Wilcoxon rank sum test with continuity correction
67c69
< W = 8, p-value = 0.0027
---
> W = 8, p-value = 0.0038
69a72,74
> Warning message:
> In wilcox.test.default(x, y, alt = "less") :
> cannot compute exact p-value with ties
91c96
< Wilcoxon rank sum exact test
---
> Wilcoxon rank sum test with continuity correction
94c99
< W = 8, p-value = 0.0053
---
> W = 8, p-value = 0.0076
97c102
< -7 -1
---
> -6.0001 -1.0001
101a107,111
> Warning messages:
> 1: In wilcox.test.default(x, y, conf.int = TRUE) :
> cannot compute exact p-value with ties
> 2: In wilcox.test.default(x, y, conf.int = TRUE) :
> cannot compute exact confidence intervals with ties
121c131
< Wilcoxon rank sum exact test
---
> Wilcoxon rank sum test with continuity correction
124c134
< W = 8, p-value = 0.0027
---
> W = 8, p-value = 0.0038
127c137
< -Inf -1
---
> -Inf -2
131a142,146
> Warning messages:
> 1: In wilcox.test.default(x, y, conf.int = TRUE, alt = "less") :
> cannot compute exact p-value with ties
> 2: In wilcox.test.default(x, y, conf.int = TRUE, alt = "less") :
> cannot compute exact confidence intervals with ties
151c166
< Wilcoxon rank sum exact test
---
> Wilcoxon rank sum test with continuity correction
161a177,181
> Warning messages:
> 1: In wilcox.test.default(x, y, conf.int = TRUE, alt = "great") :
> cannot compute exact p-value with ties
> 2: In wilcox.test.default(x, y, conf.int = TRUE, alt = "great") :
> cannot compute exact confidence intervals with ties
Running ‘sign-ci.R’
Comparing ‘sign-ci.Rout’ to ‘sign-ci.Rout.save’ ... OK
Running ‘sign.R’
Comparing ‘sign.Rout’ to ‘sign.Rout.save’ ... OK
Running ‘signrank.R’
Comparing ‘signrank.Rout’ to ‘signrank.Rout.save’ ...46,47c46,48
< Warning message:
< In wilcox.test.default(x) : cannot compute exact p-value with zeroes
---
> Warning messages:
> 1: In wilcox.test.default(x) : cannot compute exact p-value with ties
> 2: In wilcox.test.default(x) : cannot compute exact p-value with zeroes
85,86c86,89
< Warning message:
< In wilcox.test.default(x, alt = "less") :
---
> Warning messages:
> 1: In wilcox.test.default(x, alt = "less") :
> cannot compute exact p-value with ties
> 2: In wilcox.test.default(x, alt = "less") :
125,126c128,131
< Warning message:
< In wilcox.test.default(x, alt = "great") :
---
> Warning messages:
> 1: In wilcox.test.default(x, alt = "great") :
> cannot compute exact p-value with ties
> 2: In wilcox.test.default(x, alt = "great") :
155c160
< 4.3784e-05 3.5000e+00
---
> 0.49999 4.50000
158c163
< 1.9999
---
> 2.5
162c167
< cannot compute exact p-value with zeroes
---
> cannot compute exact p-value with ties
163a169,172
> cannot compute exact confidence interval with ties
> 3: In wilcox.test.default(x, conf.int = TRUE) :
> cannot compute exact p-value with zeroes
> 4: In wilcox.test.default(x, conf.int = TRUE) :
192c201
< -Inf 3.5
---
> -Inf 4.4999
195c204
< 1.9999
---
> 2.5
199c208
< cannot compute exact p-value with zeroes
---
> cannot compute exact p-value with ties
200a210,213
> cannot compute exact confidence interval with ties
> 3: In wilcox.test.default(x, conf.int = TRUE, alt = "less") :
> cannot compute exact p-value with zeroes
> 4: In wilcox.test.default(x, conf.int = TRUE, alt = "less") :
227c240
< 0.49996 Inf
---
> 0.50001 Inf
230c243
< 1.9999
---
> 2.5
234c247
< cannot compute exact p-value with zeroes
---
> cannot compute exact p-value with ties
235a249,252
> cannot compute exact confidence interval with ties
> 3: In wilcox.test.default(x, conf.int = TRUE, alt = "great") :
> cannot compute exact p-value with zeroes
> 4: In wilcox.test.default(x, conf.int = TRUE, alt = "great") :
Running ‘testc.R’
Comparing ‘testc.Rout’ to ‘testc.Rout.save’ ... OK
Running ‘testd.R’
Comparing ‘testd.Rout’ to ‘testd.Rout.save’ ... OK
Running ‘teste.R’
Comparing ‘teste.Rout’ to ‘teste.Rout.save’ ... OK
- checking PDF version of manual ... OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 NOTE