- using R Under development (unstable) (2026-03-27 r89731)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 22.1.2 (https://github.com/llvm/llvm-project 1ab49a973e210e97d61e5db6557180dcb92c3e98)
flang version 22.1.2 (https://github.com/llvm/llvm-project 1ab49a973e210e97d61e5db6557180dcb92c3e98)
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
* current time: 2026-03-29 01:27:32 UTC
- using option ‘--no-stop-on-test-error’
- checking for file ‘fastshap/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘fastshap’ version ‘0.1.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘fastshap’ can be installed ... [35s/28s] OK
See the install log for details.
- used C++ compiler: ‘clang version 22.1.2 (https://github.com/llvm/llvm-project 1ab49a973e210e97d61e5db6557180dcb92c3e98)’
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [9s/12s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... ERROR
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> if ( requireNamespace("tinytest", quietly=TRUE) ){
+ home <- length(unclass(packageVersion("fastshap"))[[1L]]) == 4
+ tinytest::test_package("fastshap", at_home = home)
+ }
test-adjust.R................. 0 tests 0.1s [Exited at #7: 'requireNamespace("lightgbm", quietly = TRUE)' is not TRUE]
test-baseline.R............... 0 tests 4ms [Exited at #4: 'requireNamespace("lightgbm", quietly = TRUE)' is not TRUE]
test-convergence.R............ 0 tests 3ms [Exited at #4: Test not ready]
test-copy-classes.R........... 0 tests
test-copy-classes.R........... 0 tests
test-copy-classes.R........... 0 tests
test-copy-classes.R........... 0 tests
test-copy-classes.R........... 0 tests
test-copy-classes.R........... 1 tests OK
test-copy-classes.R........... 2 tests OK
test-copy-classes.R........... 3 tests OK 21ms
test-exact.R.................. 0 tests
test-exact.R.................. 0 tests
test-exact.R.................. 0 tests
test-exact.R.................. 0 tests
test-exact.R.................. 0 tests
test-exact.R.................. 0 tests
test-exact.R.................. 0 tests
test-exact.R.................. 0 tests
test-exact.R.................. 0 tests
test-exact.R.................. 1 tests OK
test-exact.R.................. 2 tests OK
test-exact.R.................. 3 tests OK
test-exact.R.................. 4 tests OK
test-exact.R.................. 4 tests OK
test-exact.R.................. 4 tests OK
test-exact.R.................. 4 tests OK Error in phis[, "BIAS"] : incorrect number of dimensions
Calls: <Anonymous> ... FUN -> eval -> eval -> <Anonymous> -> explain.xgb.Booster
In addition: Warning messages:
1: In throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized), :
Passed unrecognized parameters: verbose. This warning will become an error in a future version.
2: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'data' has been renamed to 'x'. This warning will become an error in a future version.
3: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'label' has been renamed to 'y'. This warning will become an error in a future version.
4: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'eta' has been renamed to 'learning_rate'. This warning will become an error in a future version.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... OK
- checking PDF version of manual ... [8s/12s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR