* installing *source* package ‘fastei’ ...
** this is package ‘fastei’ version ‘0.0.0.10’
** package ‘fastei’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 21.1.1’
using C++ compiler: ‘clang version 21.1.1’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/fastei/src'
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c LP.c -o LP.o
LP.c:45:20: warning: unused function 'row_copy' [-Wunused-function]
45 | static inline void row_copy(int n, const double *src, double *dst)
| ^~~~~~~~
1 warning generated.
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c MCMC.c -o MCMC.o
MCMC.c:182:14: warning: unused variable 'arraySize' [-Wunused-variable]
182 | uint32_t arraySize = M * S;
| ^~~~~~~~~
MCMC.c:361:13: warning: unused variable 'W' [-Wunused-variable]
361 | Matrix *W = &ctx->W; // Get the W matrix
| ^
MCMC.c:497:20: warning: unused variable 'qsum' [-Wunused-variable]
497 | double qsum = 0;
| ^~~~
MCMC.c:483:13: warning: unused variable 'W' [-Wunused-variable]
483 | Matrix *W = &ctx->W; // Get the W matrix
| ^
MCMC.c:488:12: warning: variable 'borrar' set but not used [-Wunused-but-set-variable]
488 | double borrar = 0;
| ^
MCMC.c:489:12: warning: variable 'borrar2' set but not used [-Wunused-but-set-variable]
489 | double borrar2 = 0;
| ^
MCMC.c:550:27: warning: unused variable 'currentMatrix' [-Wunused-variable]
550 | IntMatrix currentMatrix = currentSet->data[s]; // Z
| ^~~~~~~~~~~~~
MCMC.c:518:13: warning: unused variable 'X' [-Wunused-variable]
518 | Matrix *X = &ctx->X;
| ^
MCMC.c:520:16: warning: unused variable 'intX' [-Wunused-variable]
520 | IntMatrix *intX = &ctx->intX;
| ^~~~
MCMC.c:521:16: warning: unused variable 'intW' [-Wunused-variable]
521 | IntMatrix *intW = &ctx->intW;
| ^~~~
MCMC.c:523:13: warning: unused variable 'probabilities' [-Wunused-variable]
523 | Matrix *probabilities = &ctx->probabilities;
| ^~~~~~~~~~~~~
11 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c bootstrap.c -o bootstrap.o
bootstrap.c:132:9: warning: unused variable 'samples' [-Wunused-variable]
132 | int samples = bdim * bootiter;
| ^~~~~~~
bootstrap.c:133:9: warning: unused variable 'matsize' [-Wunused-variable]
133 | int matsize = wmat->cols * xmat->rows;
| ^~~~~~~
bootstrap.c:251:9: warning: unused variable 'matsize' [-Wunused-variable]
251 | int matsize = xmat->rows;
| ^~~~~~~
3 warnings generated.
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c dynamic_program.c -o dynamic_program.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c exact.c -o exact.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c main.c -o main.o
exact.c:224:10: warning: unused variable 'HSETS' [-Wunused-variable]
224 | Set *HSETS = ctx->hset;
| ^~~~~
exact.c:268:10: warning: unused variable 'KSETS' [-Wunused-variable]
268 | Set *KSETS = ctx->kset;
| ^~~~~
exact.c:414:10: warning: unused variable 'KSETS' [-Wunused-variable]
414 | Set *KSETS = ctx->kset;
| ^~~~~
exact.c:415:10: warning: unused variable 'HSETS' [-Wunused-variable]
415 | Set *HSETS = ctx->hset;
| ^~~~~
exact.c:584:13: warning: unused variable 'W' [-Wunused-variable]
584 | Matrix *W = &ctx->W;
| ^
main.c:497:25: warning: variable 'status' set but not used [-Wunused-but-set-variable]
497 | int status;
| ^
main.c:634:50: warning: '&&' within '||' [-Wlogical-op-parentheses]
634 | if (i >= 1 && i >= config.params.miniter &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
635 | (fabs(newLL - oldLL) < LLconvergence ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
636 | convergeMatrix(&oldProbabilities, &ctx->probabilities, convergence)) ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
main.c:634:50: note: place parentheses around the '&&' expression to silence this warning
634 | if (i >= 1 && i >= config.params.miniter &&
| ^
| (
635 | (fabs(newLL - oldLL) < LLconvergence ||
636 | convergeMatrix(&oldProbabilities, &ctx->probabilities, convergence)) ||
| )
5 warnings generated.
2 warnings generated.
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c multinomial.c -o multinomial.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c multivariate-cdf.c -o multivariate-cdf.o
multinomial.c:107:13: warning: unused variable 'X' [-Wunused-variable]
107 | Matrix *X = &ctx->X;
| ^
multinomial.c:108:13: warning: unused variable 'W' [-Wunused-variable]
108 | Matrix *W = &ctx->W;
| ^
multinomial.c:110:16: warning: unused variable 'intW' [-Wunused-variable]
110 | IntMatrix *intW = &ctx->intW;
| ^~~~
3 warnings generated.
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c multivariate-pdf.c -o multivariate-pdf.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c utils_hash.c -o utils_hash.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c utils_matrix.c -o utils_matrix.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c utils_multivariate.c -o utils_multivariate.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c wrapper.cpp -o wrapper.o
utils_multivariate.c:230:10: warning: unused variable 'trans' [-Wunused-variable]
230 | char trans = 'N'; // (There's no separate transpose flag in dger,
| ^~~~~
1 warning generated.
utils_matrix.c:62:13: warning: unused function 'transposeMatrix' [-Wunused-function]
62 | static void transposeMatrix(const double *src, int rows, int cols, double *dst)
| ^~~~~~~~~~~~~~~
1 warning generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o fastei.so LP.o MCMC.o RcppExports.o bootstrap.o dynamic_program.o exact.o main.o multinomial.o multivariate-cdf.o multivariate-pdf.o utils_hash.o utils_matrix.o utils_multivariate.o wrapper.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/fastei/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/fastei/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/fastei/src'
installing to /data/gannet/ripley/R/packages/tests-clang/fastei.Rcheck/00LOCK-fastei/00new/fastei/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fastei)