* installing *source* package ‘fastei’ ...
** this is package ‘fastei’ version ‘0.0.0.7’
** package ‘fastei’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 20.1.6’
using C++ compiler: ‘clang version 20.1.6’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/fastei/src'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o
clang-20 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c bootstrap.c -o bootstrap.o
bootstrap.c:132:9: warning: unused variable 'samples' [-Wunused-variable]
132 | int samples = bdim * bootiter;
| ^~~~~~~
bootstrap.c:133:9: warning: unused variable 'matsize' [-Wunused-variable]
133 | int matsize = wmat->cols * xmat->rows;
| ^~~~~~~
bootstrap.c:248:9: warning: unused variable 'matsize' [-Wunused-variable]
248 | int matsize = xmat->rows;
| ^~~~~~~
3 warnings generated.
clang-20 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c dynamic_program.c -o dynamic_program.o
clang-20 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c exact.c -o exact.o
clang-20 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c hitAndRun.c -o hitAndRun.o
hitAndRun.c:240:17: warning: variable 'totalVals' set but not used [-Wunused-but-set-variable]
240 | int totalVals = 0;
| ^
hitAndRun.c:212:14: warning: unused variable 'arraySize' [-Wunused-variable]
212 | uint32_t arraySize = M * S;
| ^~~~~~~~~
hitAndRun.c:536:20: warning: unused variable 'qsum' [-Wunused-variable]
536 | double qsum = 0;
| ^~~~
hitAndRun.c:527:12: warning: variable 'borrar' set but not used [-Wunused-but-set-variable]
527 | double borrar = 0;
| ^
hitAndRun.c:528:12: warning: variable 'borrar2' set but not used [-Wunused-but-set-variable]
528 | double borrar2 = 0;
| ^
hitAndRun.c:604:25: warning: unused variable 'currentMatrix' [-Wunused-variable]
604 | Matrix *currentMatrix = currentSet->data[s]; // Z
| ^~~~~~~~~~~~~
6 warnings generated.
clang-20 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c main.c -o main.o
main.c:520:20: warning: '&&' within '||' [-Wlogical-op-parentheses]
520 | if (i >= 1 && (fabs(newLL - oldLL) < LLconvergence || convergeMatrix(&newProbability, currentP, convergence)) ||
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
main.c:520:20: note: place parentheses around the '&&' expression to silence this warning
520 | if (i >= 1 && (fabs(newLL - oldLL) < LLconvergence || convergeMatrix(&newProbability, currentP, convergence)) ||
| ^
| ( )
1 warning generated.
clang-20 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c multinomial.c -o multinomial.o
clang-20 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c multivariate-cdf.c -o multivariate-cdf.o
clang-20 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c multivariate-pdf.c -o multivariate-pdf.o
clang-20 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c utils_hash.c -o utils_hash.o
clang-20 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c utils_matrix.c -o utils_matrix.o
utils_matrix.c:65:13: warning: unused function 'transposeMatrix' [-Wunused-function]
65 | static void transposeMatrix(const double *src, int rows, int cols, double *dst)
| ^~~~~~~~~~~~~~~
1 warning generated.
clang-20 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c utils_multivariate.c -o utils_multivariate.o
utils_multivariate.c:227:10: warning: unused variable 'trans' [-Wunused-variable]
227 | char trans = 'N'; // (There's no separate transpose flag in dger,
| ^~~~~
1 warning generated.
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c wrapper.cpp -o wrapper.o
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o fastei.so RcppExports.o bootstrap.o dynamic_program.o exact.o hitAndRun.o main.o multinomial.o multivariate-cdf.o multivariate-pdf.o utils_hash.o utils_matrix.o utils_multivariate.o wrapper.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/fastei/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/fastei/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/fastei/src'
installing to /data/gannet/ripley/R/packages/tests-clang/fastei.Rcheck/00LOCK-fastei/00new/fastei/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fastei)