• using R Under development (unstable) (2026-02-03 r89373)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 21.1.8     flang version 21.1.8
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8 * current time: 2026-02-03 12:54:44Z
• using option ‘--no-stop-on-test-error’
• checking for file ‘ezec/DESCRIPTION’ ... OK
• this is package ‘ezec’ version ‘1.0.1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘ezec’ can be installed ... [16s/28s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [22s/31s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... ERROR Running examples in ‘ezec-Ex.R’ failed The error most likely occurred in: > ### Name: EC_table > ### Title: Function to generate a table of EC values from a data frame of > ### multiple isolates. > ### Aliases: EC_table > > ### ** Examples > > data(dummydata) > # Using 3 parameter Log-Logistic Model (default) > EC_table(dummydata, form = response ~ dose) Error: ! `do_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `do()` instead. ℹ See vignette('programming') for more help Backtrace:     ▆  1. ├─ezec::EC_table(dummydata, form = response ~ dose)  2. │ └─dat %>% dplyr::group_by_(idcol) %>% ...  3. └─dplyr::do_(...)  4. └─dplyr:::lazy_defunct("do")  5. └─lifecycle::deprecate_stop(...)  6. └─lifecycle:::deprecate_stop0(msg)  7. └─rlang::cnd_signal(...) Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [8s/11s] ERROR   Running ‘testthat.R’ [7s/10s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(ezec)   >   > test_check("ezec")   Saving _problems/test-tables-45.R   [ FAIL 2 | WARN 0 | SKIP 1 | PASS 2 ]      ══ Skipped tests (1) ═══════════════════════════════════════════════════════════   • On CRAN (1): 'test-tables.R:19:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-tables.R:45:3'): EC_table can read files ───────────────────────   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `do_()` was deprecated in dplyr 0.7.0 and is now defunct.   ℹ Please use `do()` instead.   ℹ See vignette('programming') for more help   Backtrace:       ▆    1. ├─ezec::EC_table(tmp, form = response ~ dose, sep = ",") at test-tables.R:45:3    2. │ └─dat %>% dplyr::group_by_(idcol) %>% ...    3. └─dplyr::do_(...)    4. └─dplyr:::lazy_defunct("do")    5. └─lifecycle::deprecate_stop(...)    6. └─lifecycle:::deprecate_stop0(msg)    7. └─rlang::cnd_signal(...)   ── Error ('test-tables.R:54:3'): Insufficient data is handled well ─────────────   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `do_()` was deprecated in dplyr 0.7.0 and is now defunct.   ℹ Please use `do()` instead.   ℹ See vignette('programming') for more help   Backtrace:        ▆     1. ├─testthat::expect_output(...) at test-tables.R:54:3     2. │ └─testthat:::quasi_capture(...)     3. │ ├─testthat (local) .capture(...)     4. │ │ └─testthat::capture_output_lines(code, print, width = width)     5. │ │ └─testthat:::eval_with_output(code, print = print, width = width)     6. │ │ ├─withr::with_output_sink(path, withVisible(code))     7. │ │ │ └─base::force(code)     8. │ │ └─base::withVisible(code)     9. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))    10. ├─ezec::EC_table(...)    11. │ └─dat %>% dplyr::group_by_(idcol) %>% ...    12. └─dplyr::do_(...)    13. └─dplyr:::lazy_defunct("do")    14. └─lifecycle::deprecate_stop(...)    15. └─lifecycle:::deprecate_stop0(msg)    16. └─rlang::cnd_signal(...)      [ FAIL 2 | WARN 0 | SKIP 1 | PASS 2 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... ERROR Error(s) in re-building vignettes: --- re-building ‘getting_started.Rmd’ using rmarkdown Quitting from getting_started.Rmd:76-81 [ec_table] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/lifecycle_error_deprecated> Error: ! `do_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `do()` instead. ℹ See vignette('programming') for more help --- Backtrace:     ▆  1. ├─ezec::EC_table(dummydata, form = response ~ dose)  2. │ └─dat %>% dplyr::group_by_(idcol) %>% ...  3. └─dplyr::do_(...)  4. └─dplyr:::lazy_defunct("do")  5. └─lifecycle::deprecate_stop(...)  6. └─lifecycle:::deprecate_stop0(msg) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'getting_started.Rmd' failed with diagnostics: `do_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `do()` instead. ℹ See vignette('programming') for more help --- failed re-building ‘getting_started.Rmd’ SUMMARY: processing the following file failed:   ‘getting_started.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 3 ERRORs