* installing *source* package ‘ernm’ ...
** this is package ‘ernm’ version ‘1.0.0’
** package ‘ernm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 20.1.7’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ernm/src'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c Ranker.cpp -o Ranker.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/ernm.h:14:
./../inst/include/DyadToggles.h:1613:7: warning: variable 'degree' set but not used [-Wunused-but-set-variable]
1613 | int degree;
| ^
1 warning generated.
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppModule.cpp -o RcppModule.o
In file included from RcppModule.cpp:6:
../inst/include/DyadToggles.h:1613:7: warning: variable 'degree' set but not used [-Wunused-but-set-variable]
1613 | int degree;
| ^
In file included from RcppModule.cpp:8:
In file included from ../inst/include/MetropolisHastings.h:13:
../inst/include/ToggleController.h:73:9: warning: instantiation of variable 'ernm::ToggleController<ernm::Directed>::dyadMapPtr' required here, but no definition is available [-Wundefined-var-template]
73 | pS = dyadMapPtr->at(name);
| ^
../inst/include/MetropolisHastings.h:163:56: note: in instantiation of member function 'ernm::ToggleController<ernm::Directed>::getDyadToggle' requested here
163 | dyadToggle = DyadTogglePtr(ToggleController<Engine>::getDyadToggle(name,params));
| ^
RcppModule.cpp:82:63: note: in instantiation of member function 'ernm::MetropolisHastings<ernm::Directed>::setDyadToggleType' requested here
82 | .method("setDyadToggleType",&MetropolisHastings<Directed>::setDyadToggleType)
| ^
../inst/include/ToggleController.h:26:18: note: forward declaration of template entity is here
26 | static DtMapPtr dyadMapPtr;
| ^
../inst/include/ToggleController.h:73:9: note: add an explicit instantiation declaration to suppress this warning if 'ernm::ToggleController<ernm::Directed>::dyadMapPtr' is explicitly instantiated in another translation unit
73 | pS = dyadMapPtr->at(name);
| ^
../inst/include/ToggleController.h:93:9: warning: instantiation of variable 'ernm::ToggleController<ernm::Directed>::vertexMapPtr' required here, but no definition is available [-Wundefined-var-template]
93 | pS = vertexMapPtr->at(name);
| ^
../inst/include/MetropolisHastings.h:171:58: note: in instantiation of member function 'ernm::ToggleController<ernm::Directed>::getVertexToggle' requested here
171 | vertToggle = VertexTogglePtr(ToggleController<Engine>::getVertexToggle(name,params));
| ^
RcppModule.cpp:83:65: note: in instantiation of member function 'ernm::MetropolisHastings<ernm::Directed>::setVertexToggleType' requested here
83 | .method("setVertexToggleType",&MetropolisHastings<Directed>::setVertexToggleType)
| ^
../inst/include/ToggleController.h:27:18: note: forward declaration of template entity is here
27 | static VtMapPtr vertexMapPtr;
| ^
../inst/include/ToggleController.h:93:9: note: add an explicit instantiation declaration to suppress this warning if 'ernm::ToggleController<ernm::Directed>::vertexMapPtr' is explicitly instantiated in another translation unit
93 | pS = vertexMapPtr->at(name);
| ^
../inst/include/ToggleController.h:73:9: warning: instantiation of variable 'ernm::ToggleController<ernm::Undirected>::dyadMapPtr' required here, but no definition is available [-Wundefined-var-template]
73 | pS = dyadMapPtr->at(name);
| ^
../inst/include/MetropolisHastings.h:163:56: note: in instantiation of member function 'ernm::ToggleController<ernm::Undirected>::getDyadToggle' requested here
163 | dyadToggle = DyadTogglePtr(ToggleController<Engine>::getDyadToggle(name,params));
| ^
RcppModule.cpp:94:65: note: in instantiation of member function 'ernm::MetropolisHastings<ernm::Undirected>::setDyadToggleType' requested here
94 | .method("setDyadToggleType",&MetropolisHastings<Undirected>::setDyadToggleType)
| ^
../inst/include/ToggleController.h:26:18: note: forward declaration of template entity is here
26 | static DtMapPtr dyadMapPtr;
| ^
../inst/include/ToggleController.h:73:9: note: add an explicit instantiation declaration to suppress this warning if 'ernm::ToggleController<ernm::Undirected>::dyadMapPtr' is explicitly instantiated in another translation unit
73 | pS = dyadMapPtr->at(name);
| ^
../inst/include/ToggleController.h:93:9: warning: instantiation of variable 'ernm::ToggleController<ernm::Undirected>::vertexMapPtr' required here, but no definition is available [-Wundefined-var-template]
93 | pS = vertexMapPtr->at(name);
| ^
../inst/include/MetropolisHastings.h:171:58: note: in instantiation of member function 'ernm::ToggleController<ernm::Undirected>::getVertexToggle' requested here
171 | vertToggle = VertexTogglePtr(ToggleController<Engine>::getVertexToggle(name,params));
| ^
RcppModule.cpp:95:67: note: in instantiation of member function 'ernm::MetropolisHastings<ernm::Undirected>::setVertexToggleType' requested here
95 | .method("setVertexToggleType",&MetropolisHastings<Undirected>::setVertexToggleType)
| ^
../inst/include/ToggleController.h:27:18: note: forward declaration of template entity is here
27 | static VtMapPtr vertexMapPtr;
| ^
../inst/include/ToggleController.h:93:9: note: add an explicit instantiation declaration to suppress this warning if 'ernm::ToggleController<ernm::Undirected>::vertexMapPtr' is explicitly instantiated in another translation unit
93 | pS = vertexMapPtr->at(name);
| ^
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c StatController.cpp -o StatController.o
In file included from RcppModule.cpp:8:
In file included from ../inst/include/MetropolisHastings.h:11:
In file included from ../inst/include/Model.h:13:
../inst/include/StatController.h:61:9: warning: instantiation of variable 'ernm::StatController<ernm::Undirected>::statMapPtr' required here, but no definition is available [-Wundefined-var-template]
61 | pS = statMapPtr->at(name);
| ^
../inst/include/Model.h:452:54: note: in instantiation of member function 'ernm::StatController<ernm::Undirected>::getStat' requested here
452 | AbstractStat<Engine>* ps = StatController<Engine>::getStat(name, params);
| ^
RcppModule.cpp:140:46: note: in instantiation of member function 'ernm::Model<ernm::Undirected>::addStatistic' requested here
140 | .method("addStatistic",&Model<Undirected>::addStatistic)
| ^
../inst/include/StatController.h:38:20: note: forward declaration of template entity is here
38 | static StatMapPtr statMapPtr;
| ^
../inst/include/StatController.h:61:9: note: add an explicit instantiation declaration to suppress this warning if 'ernm::StatController<ernm::Undirected>::statMapPtr' is explicitly instantiated in another translation unit
61 | pS = statMapPtr->at(name);
| ^
../inst/include/StatController.h:77:9: warning: instantiation of variable 'ernm::StatController<ernm::Undirected>::offsetMapPtr' required here, but no definition is available [-Wundefined-var-template]
77 | pS = offsetMapPtr->at(name);
| ^
../inst/include/Model.h:465:56: note: in instantiation of member function 'ernm::StatController<ernm::Undirected>::getOffset' requested here
465 | AbstractOffset<Engine>* ps = StatController<Engine>::getOffset(name, params);
| ^
RcppModule.cpp:141:43: note: in instantiation of member function 'ernm::Model<ernm::Undirected>::addOffset' requested here
141 | .method("addOffset",&Model<Undirected>::addOffset)
| ^
../inst/include/StatController.h:39:22: note: forward declaration of template entity is here
39 | static OffsetMapPtr offsetMapPtr;
| ^
../inst/include/StatController.h:77:9: note: add an explicit instantiation declaration to suppress this warning if 'ernm::StatController<ernm::Undirected>::offsetMapPtr' is explicitly instantiated in another translation unit
77 | pS = offsetMapPtr->at(name);
| ^
../inst/include/StatController.h:61:9: warning: instantiation of variable 'ernm::StatController<ernm::Directed>::statMapPtr' required here, but no definition is available [-Wundefined-var-template]
61 | pS = statMapPtr->at(name);
| ^
../inst/include/Model.h:452:54: note: in instantiation of member function 'ernm::StatController<ernm::Directed>::getStat' requested here
452 | AbstractStat<Engine>* ps = StatController<Engine>::getStat(name, params);
| ^
RcppModule.cpp:160:44: note: in instantiation of member function 'ernm::Model<ernm::Directed>::addStatistic' requested here
160 | .method("addStatistic",&Model<Directed>::addStatistic)
| ^
../inst/include/StatController.h:38:20: note: forward declaration of template entity is here
38 | static StatMapPtr statMapPtr;
| ^
../inst/include/StatController.h:61:9: note: add an explicit instantiation declaration to suppress this warning if 'ernm::StatController<ernm::Directed>::statMapPtr' is explicitly instantiated in another translation unit
61 | pS = statMapPtr->at(name);
| ^
../inst/include/StatController.h:77:9: warning: instantiation of variable 'ernm::StatController<ernm::Directed>::offsetMapPtr' required here, but no definition is available [-Wundefined-var-template]
77 | pS = offsetMapPtr->at(name);
| ^
../inst/include/Model.h:465:56: note: in instantiation of member function 'ernm::StatController<ernm::Directed>::getOffset' requested here
465 | AbstractOffset<Engine>* ps = StatController<Engine>::getOffset(name, params);
| ^
RcppModule.cpp:161:41: note: in instantiation of member function 'ernm::Model<ernm::Directed>::addOffset' requested here
161 | .method("addOffset",&Model<Directed>::addOffset)
| ^
../inst/include/StatController.h:39:22: note: forward declaration of template entity is here
39 | static OffsetMapPtr offsetMapPtr;
| ^
../inst/include/StatController.h:77:9: note: add an explicit instantiation declaration to suppress this warning if 'ernm::StatController<ernm::Directed>::offsetMapPtr' is explicitly instantiated in another translation unit
77 | pS = offsetMapPtr->at(name);
| ^
In file included from StatController.cpp:3:
../inst/include/Stats.h:334:36: warning: extra ';' inside a class [-Wextra-semi]
334 | std::vector<double> sumNbrDegrees;;
| ^
../inst/include/Stats.h:410:11: warning: variable 'nExpected' set but not used [-Wunused-but-set-variable]
410 | double nExpected = nEdgesBetweenNbrs * nPosTri / nPosEdges;
| ^
../inst/include/Stats.h:456:11: warning: variable 'curNExpected' set but not used [-Wunused-but-set-variable]
456 | double curNExpected = curNEdgesBetweenNbrs * nPosTri / nPosEdges;
| ^
../inst/include/Stats.h:492:11: warning: variable 'curNExpected' set but not used [-Wunused-but-set-variable]
492 | double curNExpected = curNEdgesBetweenNbrs * nPosTri / nPosEdges;
| ^
../inst/include/Stats.h:527:11: warning: variable 'curNExpected' set but not used [-Wunused-but-set-variable]
527 | double curNExpected = curNEdgesBetweenNbrs * curNPosTri / curNPosEdges;
| ^
../inst/include/Stats.h:528:11: warning: variable 'newNExpected' set but not used [-Wunused-but-set-variable]
528 | double newNExpected = newNEdgesBetweenNbrs * newNPosTri / newNPosEdges;
| ^
../inst/include/Stats.h:1450:14: warning: unused variable 'addingEdge' [-Wunused-variable]
1450 | bool addingEdge = !net.hasEdge(from,to);
| ^~~~~~~~~~
../inst/include/Stats.h:1635:10: warning: unused variable 'var' [-Wunused-variable]
1635 | double var = 0.0;
| ^~~
../inst/include/Stats.h:1636:10: warning: unused variable 'skew' [-Wunused-variable]
1636 | double skew = 0.0;
| ^~~~
../inst/include/Stats.h:1748:10: warning: variable 'var' set but not used [-Wunused-but-set-variable]
1748 | double var = 0.0;
| ^
../inst/include/Stats.h:1879:10: warning: variable 'sum' set but not used [-Wunused-but-set-variable]
1879 | double sum = 0.0;
| ^
../inst/include/Stats.h:2120:10: warning: unused variable 'toDeg' [-Wunused-variable]
2120 | double toDeg;
| ^~~~~
../inst/include/Stats.h:2121:10: warning: unused variable 'fromDeg' [-Wunused-variable]
2121 | double fromDeg;
| ^~~~~~~
../inst/include/Stats.h:2132:10: warning: variable 'deg' set but not used [-Wunused-but-set-variable]
2132 | double deg = net.degree(from);
| ^
../inst/include/Stats.h:2212:10: warning: variable 'var' set but not used [-Wunused-but-set-variable]
2212 | double var = 0.0;
| ^
../inst/include/Stats.h:2266:10: warning: unused variable 'mean' [-Wunused-variable]
2266 | double mean = sum / n;
| ^~~~
In file included from StatController.cpp:1:
In file included from ../inst/include/StatController.h:9:
In file included from ../inst/include/Stat.h:13:
In file included from ../inst/include/BinaryNet.h:12:
In file included from ../inst/include/DirectedVertex.h:13:
In file included from ../inst/include/Vertex.h:16:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container/flat_set.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container/detail/flat_tree.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28:
/data/gannet/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:231:20: warning: first argument in call to 'memmove' is a pointer to non-trivially copyable type 'value_type' (aka 'std::pair<int, int>') [-Wnontrivial-memcall]
231 | std::memmove(dest_raw, beg_raw, sizeof(value_type)*n);
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:377:16: note: in instantiation of function template specialization 'boost::container::dtl::memmove<std::pair<int, int> *, std::pair<int, int> *>' requested here
377 | { return dtl::memmove(f, l, r); }
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:1306:35: note: in instantiation of function template specialization 'boost::container::uninitialized_move_alloc<boost::container::new_allocator<std::pair<int, int>>, std::pair<int, int> *, std::pair<int, int> *>' requested here
1306 | O d_last = ::boost::container::uninitialized_move_alloc(a, first, pos, d_first);
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/container/vector.hpp:3276:25: note: in instantiation of function template specialization 'boost::container::uninitialized_move_and_insert_alloc<boost::container::new_allocator<std::pair<int, int>>, std::pair<int, int> *, std::pair<int, int> *, boost::container::dtl::insert_emplace_proxy<boost::container::new_allocator<std::pair<int, int>>, std::pair<int, int>>>' requested here
3276 | boost::container::uninitialized_move_and_insert_alloc
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/container/vector.hpp:3034:13: note: in instantiation of function template specialization 'boost::container::vector<std::pair<int, int>>::priv_insert_forward_range_new_allocation<boost::container::dtl::insert_emplace_proxy<boost::container::new_allocator<std::pair<int, int>>, std::pair<int, int>>>' requested here
3034 | this->priv_insert_forward_range_new_allocation(new_buf, new_cap, raw_pos, n, insert_range_proxy);
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/container/vector.hpp:3099:23: note: in instantiation of function template specialization 'boost::container::vector<std::pair<int, int>>::priv_insert_forward_range_no_capacity<boost::container::dtl::insert_emplace_proxy<boost::container::new_allocator<std::pair<int, int>>, std::pair<int, int>>>' requested here
3099 | return this->priv_insert_forward_range_no_capacity(p, n, insert_range_proxy, alloc_version());
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/container/vector.hpp:1952:20: note: (skipping 6 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
1952 | return this->priv_insert_forward_range( vector_iterator_get_ptr(position), 1
| ^
../inst/include/Stats.h:3400:18: note: in instantiation of member function 'boost::container::flat_map<int, int>::operator[]' requested here
3400 | sharedValues[f][t] = nbrs;
| ^
../inst/include/Stats.h:3424:4: note: in instantiation of member function 'ernm::Gwesp<ernm::Directed>::setSharedValue' requested here
3424 | setSharedValue(net,from,to,sn);
| ^
../inst/include/Stats.h:3327:2: note: in instantiation of member function 'ernm::Gwesp<ernm::Directed>::vCalculate' requested here
3327 | Gwesp() : alpha(.5), oneexpa(1.0 - exp(-alpha)), expa(exp(alpha)),
| ^
../inst/include/Stat.h:155:11: note: in instantiation of member function 'ernm::Gwesp<ernm::Directed>::Gwesp' requested here
155 | Stat() : stat(){}
| ^
StatController.cpp:52:37: note: in instantiation of member function 'ernm::Stat<ernm::Directed, ernm::Gwesp<ernm::Directed>>::Stat' requested here
52 | registerStatistic( DirStatPtr( new DirectedGwesp() ) );
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:231:20: note: explicitly cast the pointer to silence this warning
231 | std::memmove(dest_raw, beg_raw, sizeof(value_type)*n);
| ^
| (void*)
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c ToggleController.cpp -o ToggleController.o
In file included from ToggleController.cpp:11:
../inst/include/DyadToggles.h:1613:7: warning: variable 'degree' set but not used [-Wunused-but-set-variable]
1613 | int degree;
| ^
1 warning generated.
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c VarAttrib.cpp -o VarAttrib.o
17 warnings generated.
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c main.cpp -o main.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c test.cpp -o test.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c test_BinaryNet.cpp -o test_BinaryNet.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c test_Constraint.cpp -o test_Constraint.o
9 warnings generated.
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c test_Stat.cpp -o test_Stat.o
In file included from test_Constraint.cpp:12:
../inst/include/Stats.h:334:36: warning: extra ';' inside a class [-Wextra-semi]
334 | std::vector<double> sumNbrDegrees;;
| ^
../inst/include/Stats.h:410:11: warning: variable 'nExpected' set but not used [-Wunused-but-set-variable]
410 | double nExpected = nEdgesBetweenNbrs * nPosTri / nPosEdges;
| ^
../inst/include/Stats.h:456:11: warning: variable 'curNExpected' set but not used [-Wunused-but-set-variable]
456 | double curNExpected = curNEdgesBetweenNbrs * nPosTri / nPosEdges;
| ^
../inst/include/Stats.h:492:11: warning: variable 'curNExpected' set but not used [-Wunused-but-set-variable]
492 | double curNExpected = curNEdgesBetweenNbrs * nPosTri / nPosEdges;
| ^
../inst/include/Stats.h:527:11: warning: variable 'curNExpected' set but not used [-Wunused-but-set-variable]
527 | double curNExpected = curNEdgesBetweenNbrs * curNPosTri / curNPosEdges;
| ^
../inst/include/Stats.h:528:11: warning: variable 'newNExpected' set but not used [-Wunused-but-set-variable]
528 | double newNExpected = newNEdgesBetweenNbrs * newNPosTri / newNPosEdges;
| ^
../inst/include/Stats.h:1450:14: warning: unused variable 'addingEdge' [-Wunused-variable]
1450 | bool addingEdge = !net.hasEdge(from,to);
| ^~~~~~~~~~
../inst/include/Stats.h:1635:10: warning: unused variable 'var' [-Wunused-variable]
1635 | double var = 0.0;
| ^~~
../inst/include/Stats.h:1636:10: warning: unused variable 'skew' [-Wunused-variable]
1636 | double skew = 0.0;
| ^~~~
../inst/include/Stats.h:1748:10: warning: variable 'var' set but not used [-Wunused-but-set-variable]
1748 | double var = 0.0;
| ^
../inst/include/Stats.h:1879:10: warning: variable 'sum' set but not used [-Wunused-but-set-variable]
1879 | double sum = 0.0;
| ^
../inst/include/Stats.h:2120:10: warning: unused variable 'toDeg' [-Wunused-variable]
2120 | double toDeg;
| ^~~~~
../inst/include/Stats.h:2121:10: warning: unused variable 'fromDeg' [-Wunused-variable]
2121 | double fromDeg;
| ^~~~~~~
../inst/include/Stats.h:2132:10: warning: variable 'deg' set but not used [-Wunused-but-set-variable]
2132 | double deg = net.degree(from);
| ^
../inst/include/Stats.h:2212:10: warning: variable 'var' set but not used [-Wunused-but-set-variable]
2212 | double var = 0.0;
| ^
../inst/include/Stats.h:2266:10: warning: unused variable 'mean' [-Wunused-variable]
2266 | double mean = sum / n;
| ^~~~
In file included from test_Constraint.cpp:17:
../inst/include/DyadToggles.h:1613:7: warning: variable 'degree' set but not used [-Wunused-but-set-variable]
1613 | int degree;
| ^
In file included from test_Stat.cpp:11:
../inst/include/Stats.h:334:36: warning: extra ';' inside a class [-Wextra-semi]
334 | std::vector<double> sumNbrDegrees;;
| ^
../inst/include/Stats.h:410:11: warning: variable 'nExpected' set but not used [-Wunused-but-set-variable]
410 | double nExpected = nEdgesBetweenNbrs * nPosTri / nPosEdges;
| ^
../inst/include/Stats.h:456:11: warning: variable 'curNExpected' set but not used [-Wunused-but-set-variable]
456 | double curNExpected = curNEdgesBetweenNbrs * nPosTri / nPosEdges;
| ^
../inst/include/Stats.h:492:11: warning: variable 'curNExpected' set but not used [-Wunused-but-set-variable]
492 | double curNExpected = curNEdgesBetweenNbrs * nPosTri / nPosEdges;
| ^
../inst/include/Stats.h:527:11: warning: variable 'curNExpected' set but not used [-Wunused-but-set-variable]
527 | double curNExpected = curNEdgesBetweenNbrs * curNPosTri / curNPosEdges;
| ^
../inst/include/Stats.h:528:11: warning: variable 'newNExpected' set but not used [-Wunused-but-set-variable]
528 | double newNExpected = newNEdgesBetweenNbrs * newNPosTri / newNPosEdges;
| ^
../inst/include/Stats.h:1450:14: warning: unused variable 'addingEdge' [-Wunused-variable]
1450 | bool addingEdge = !net.hasEdge(from,to);
| ^~~~~~~~~~
../inst/include/Stats.h:1635:10: warning: unused variable 'var' [-Wunused-variable]
1635 | double var = 0.0;
| ^~~
../inst/include/Stats.h:1636:10: warning: unused variable 'skew' [-Wunused-variable]
1636 | double skew = 0.0;
| ^~~~
../inst/include/Stats.h:1748:10: warning: variable 'var' set but not used [-Wunused-but-set-variable]
1748 | double var = 0.0;
| ^
../inst/include/Stats.h:1879:10: warning: variable 'sum' set but not used [-Wunused-but-set-variable]
1879 | double sum = 0.0;
| ^
../inst/include/Stats.h:2120:10: warning: unused variable 'toDeg' [-Wunused-variable]
2120 | double toDeg;
| ^~~~~
../inst/include/Stats.h:2121:10: warning: unused variable 'fromDeg' [-Wunused-variable]
2121 | double fromDeg;
| ^~~~~~~
../inst/include/Stats.h:2132:10: warning: variable 'deg' set but not used [-Wunused-but-set-variable]
2132 | double deg = net.degree(from);
| ^
../inst/include/Stats.h:2212:10: warning: variable 'var' set but not used [-Wunused-but-set-variable]
2212 | double var = 0.0;
| ^
../inst/include/Stats.h:2266:10: warning: unused variable 'mean' [-Wunused-variable]
2266 | double mean = sum / n;
| ^~~~
In file included from test_Stat.cpp:14:
../inst/include/DyadToggles.h:1613:7: warning: variable 'degree' set but not used [-Wunused-but-set-variable]
1613 | int degree;
| ^
17 warnings generated.
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c test_TaperedModel.cpp -o test_TaperedModel.o
In file included from test_Stat.cpp:9:
In file included from ../inst/include/BinaryNet.h:12:
In file included from ../inst/include/DirectedVertex.h:13:
In file included from ../inst/include/Vertex.h:16:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container/flat_set.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container/detail/flat_tree.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28:
/data/gannet/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:231:20: warning: first argument in call to 'memmove' is a pointer to non-trivially copyable type 'value_type' (aka 'std::pair<int, int>') [-Wnontrivial-memcall]
231 | std::memmove(dest_raw, beg_raw, sizeof(value_type)*n);
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:377:16: note: in instantiation of function template specialization 'boost::container::dtl::memmove<std::pair<int, int> *, std::pair<int, int> *>' requested here
377 | { return dtl::memmove(f, l, r); }
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:1306:35: note: in instantiation of function template specialization 'boost::container::uninitialized_move_alloc<boost::container::new_allocator<std::pair<int, int>>, std::pair<int, int> *, std::pair<int, int> *>' requested here
1306 | O d_last = ::boost::container::uninitialized_move_alloc(a, first, pos, d_first);
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/container/vector.hpp:3276:25: note: in instantiation of function template specialization 'boost::container::uninitialized_move_and_insert_alloc<boost::container::new_allocator<std::pair<int, int>>, std::pair<int, int> *, std::pair<int, int> *, boost::container::dtl::insert_emplace_proxy<boost::container::new_allocator<std::pair<int, int>>, std::pair<int, int>>>' requested here
3276 | boost::container::uninitialized_move_and_insert_alloc
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/container/vector.hpp:3034:13: note: in instantiation of function template specialization 'boost::container::vector<std::pair<int, int>>::priv_insert_forward_range_new_allocation<boost::container::dtl::insert_emplace_proxy<boost::container::new_allocator<std::pair<int, int>>, std::pair<int, int>>>' requested here
3034 | this->priv_insert_forward_range_new_allocation(new_buf, new_cap, raw_pos, n, insert_range_proxy);
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/container/vector.hpp:3099:23: note: in instantiation of function template specialization 'boost::container::vector<std::pair<int, int>>::priv_insert_forward_range_no_capacity<boost::container::dtl::insert_emplace_proxy<boost::container::new_allocator<std::pair<int, int>>, std::pair<int, int>>>' requested here
3099 | return this->priv_insert_forward_range_no_capacity(p, n, insert_range_proxy, alloc_version());
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/container/vector.hpp:1952:20: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
1952 | return this->priv_insert_forward_range( vector_iterator_get_ptr(position), 1
| ^
../inst/include/Stats.h:3424:4: note: in instantiation of member function 'ernm::Gwesp<ernm::Directed>::setSharedValue' requested here
3424 | setSharedValue(net,from,to,sn);
| ^
../inst/include/Stats.h:3333:2: note: in instantiation of member function 'ernm::Gwesp<ernm::Directed>::vCalculate' requested here
3333 | Gwesp(List params) : sharedValues(){
| ^
../inst/include/Stat.h:157:28: note: in instantiation of member function 'ernm::Gwesp<ernm::Directed>::Gwesp' requested here
157 | Stat(Rcpp::List params) : stat(params){}
| ^
test_Stat.cpp:191:16: note: in instantiation of member function 'ernm::Stat<ernm::Directed, ernm::Gwesp<ernm::Directed>>::Stat' requested here
191 | new Stat<Engine, Gwesp<Engine> >(ncpar));
| ^
test_Stat.cpp:276:11: note: in instantiation of function template specialization 'ernm::tests::changeStatTest<ernm::Directed>' requested here
276 | RUN_TEST(changeStatTest<Directed>("Homophily"));
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:231:20: note: explicitly cast the pointer to silence this warning
231 | std::memmove(dest_raw, beg_raw, sizeof(value_type)*n);
| ^
| (void*)
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c test_Toggle.cpp -o test_Toggle.o
In file included from test_TaperedModel.cpp:14:
../inst/include/Stats.h:334:36: warning: extra ';' inside a class [-Wextra-semi]
334 | std::vector<double> sumNbrDegrees;;
| ^
../inst/include/Stats.h:410:11: warning: variable 'nExpected' set but not used [-Wunused-but-set-variable]
410 | double nExpected = nEdgesBetweenNbrs * nPosTri / nPosEdges;
| ^
../inst/include/Stats.h:456:11: warning: variable 'curNExpected' set but not used [-Wunused-but-set-variable]
456 | double curNExpected = curNEdgesBetweenNbrs * nPosTri / nPosEdges;
| ^
../inst/include/Stats.h:492:11: warning: variable 'curNExpected' set but not used [-Wunused-but-set-variable]
492 | double curNExpected = curNEdgesBetweenNbrs * nPosTri / nPosEdges;
| ^
../inst/include/Stats.h:527:11: warning: variable 'curNExpected' set but not used [-Wunused-but-set-variable]
527 | double curNExpected = curNEdgesBetweenNbrs * curNPosTri / curNPosEdges;
| ^
../inst/include/Stats.h:528:11: warning: variable 'newNExpected' set but not used [-Wunused-but-set-variable]
528 | double newNExpected = newNEdgesBetweenNbrs * newNPosTri / newNPosEdges;
| ^
../inst/include/Stats.h:1450:14: warning: unused variable 'addingEdge' [-Wunused-variable]
1450 | bool addingEdge = !net.hasEdge(from,to);
| ^~~~~~~~~~
../inst/include/Stats.h:1635:10: warning: unused variable 'var' [-Wunused-variable]
1635 | double var = 0.0;
| ^~~
../inst/include/Stats.h:1636:10: warning: unused variable 'skew' [-Wunused-variable]
1636 | double skew = 0.0;
| ^~~~
../inst/include/Stats.h:1748:10: warning: variable 'var' set but not used [-Wunused-but-set-variable]
1748 | double var = 0.0;
| ^
../inst/include/Stats.h:1879:10: warning: variable 'sum' set but not used [-Wunused-but-set-variable]
1879 | double sum = 0.0;
| ^
../inst/include/Stats.h:2120:10: warning: unused variable 'toDeg' [-Wunused-variable]
2120 | double toDeg;
| ^~~~~
../inst/include/Stats.h:2121:10: warning: unused variable 'fromDeg' [-Wunused-variable]
2121 | double fromDeg;
| ^~~~~~~
../inst/include/Stats.h:2132:10: warning: variable 'deg' set but not used [-Wunused-but-set-variable]
2132 | double deg = net.degree(from);
| ^
../inst/include/Stats.h:2212:10: warning: variable 'var' set but not used [-Wunused-but-set-variable]
2212 | double var = 0.0;
| ^
../inst/include/Stats.h:2266:10: warning: unused variable 'mean' [-Wunused-variable]
2266 | double mean = sum / n;
| ^~~~
In file included from test_TaperedModel.cpp:17:
../inst/include/DyadToggles.h:1613:7: warning: variable 'degree' set but not used [-Wunused-but-set-variable]
1613 | int degree;
| ^
In file included from test_Toggle.cpp:11:
../inst/include/Stats.h:334:36: warning: extra ';' inside a class [-Wextra-semi]
334 | std::vector<double> sumNbrDegrees;;
| ^
../inst/include/Stats.h:410:11: warning: variable 'nExpected' set but not used [-Wunused-but-set-variable]
410 | double nExpected = nEdgesBetweenNbrs * nPosTri / nPosEdges;
| ^
../inst/include/Stats.h:456:11: warning: variable 'curNExpected' set but not used [-Wunused-but-set-variable]
456 | double curNExpected = curNEdgesBetweenNbrs * nPosTri / nPosEdges;
| ^
../inst/include/Stats.h:492:11: warning: variable 'curNExpected' set but not used [-Wunused-but-set-variable]
492 | double curNExpected = curNEdgesBetweenNbrs * nPosTri / nPosEdges;
| ^
../inst/include/Stats.h:527:11: warning: variable 'curNExpected' set but not used [-Wunused-but-set-variable]
527 | double curNExpected = curNEdgesBetweenNbrs * curNPosTri / curNPosEdges;
| ^
../inst/include/Stats.h:528:11: warning: variable 'newNExpected' set but not used [-Wunused-but-set-variable]
528 | double newNExpected = newNEdgesBetweenNbrs * newNPosTri / newNPosEdges;
| ^
../inst/include/Stats.h:1450:14: warning: unused variable 'addingEdge' [-Wunused-variable]
1450 | bool addingEdge = !net.hasEdge(from,to);
| ^~~~~~~~~~
../inst/include/Stats.h:1635:10: warning: unused variable 'var' [-Wunused-variable]
1635 | double var = 0.0;
| ^~~
../inst/include/Stats.h:1636:10: warning: unused variable 'skew' [-Wunused-variable]
1636 | double skew = 0.0;
| ^~~~
../inst/include/Stats.h:1748:10: warning: variable 'var' set but not used [-Wunused-but-set-variable]
1748 | double var = 0.0;
| ^
../inst/include/Stats.h:1879:10: warning: variable 'sum' set but not used [-Wunused-but-set-variable]
1879 | double sum = 0.0;
| ^
../inst/include/Stats.h:2120:10: warning: unused variable 'toDeg' [-Wunused-variable]
2120 | double toDeg;
| ^~~~~
../inst/include/Stats.h:2121:10: warning: unused variable 'fromDeg' [-Wunused-variable]
2121 | double fromDeg;
| ^~~~~~~
../inst/include/Stats.h:2132:10: warning: variable 'deg' set but not used [-Wunused-but-set-variable]
2132 | double deg = net.degree(from);
| ^
../inst/include/Stats.h:2212:10: warning: variable 'var' set but not used [-Wunused-but-set-variable]
2212 | double var = 0.0;
| ^
../inst/include/Stats.h:2266:10: warning: unused variable 'mean' [-Wunused-variable]
2266 | double mean = sum / n;
| ^~~~
In file included from test_Toggle.cpp:14:
../inst/include/DyadToggles.h:1613:7: warning: variable 'degree' set but not used [-Wunused-but-set-variable]
1613 | int degree;
| ^
17 warnings generated.
17 warnings generated.
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c util.cpp -o util.o
18 warnings generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o ernm.so Ranker.o RcppExports.o RcppModule.o StatController.o ToggleController.o VarAttrib.o main.o test.o test_BinaryNet.o test_Constraint.o test_Stat.o test_TaperedModel.o test_Toggle.o util.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ernm/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ernm/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ernm/src'
installing to /data/gannet/ripley/R/packages/tests-clang/ernm.Rcheck/00LOCK-ernm/00new/ernm/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ernm)