Install log for 'ernest'

* installing *source* package ‘ernest’ ...
** this is package ‘ernest’ version ‘1.2.5’
** package ‘ernest’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 23.1.0’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/ernest/src'
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-clang/cpp11/include' -I'/data/localhost/ripley/R/test-clang/cpp11eigen/include' -I'/data/localhost/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c KMeansRexCore.cpp -o KMeansRexCore.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-clang/cpp11/include' -I'/data/localhost/ripley/R/test-clang/cpp11eigen/include' -I'/data/localhost/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c cpp11.cpp -o cpp11.o
In file included from KMeansRexCore.cpp:33:
In file included from ./KMeansRexCore.h:35:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/cpp11eigen.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Dense:3:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Cholesky:32:
/data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template]
  240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
      |              ^~~~~~~~~~~~~~~~~~~~~
In file included from KMeansRexCore.cpp:33:
In file included from ./KMeansRexCore.h:35:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/cpp11eigen.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Dense:7:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Eigenvalues:39:
/data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template]
  839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n)
      |             ^~~~~~~~~~~~~~~~~~~
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-clang/cpp11/include' -I'/data/localhost/ripley/R/test-clang/cpp11eigen/include' -I'/data/localhost/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c ellipsoid.cpp -o ellipsoid.o
2 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-clang/cpp11/include' -I'/data/localhost/ripley/R/test-clang/cpp11eigen/include' -I'/data/localhost/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c exported_utils.cpp -o exported_utils.o
In file included from ellipsoid.cpp:10:
In file included from ./ellipsoid.h:15:
In file included from ./KMeansRexCore.h:35:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/cpp11eigen.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Dense:3:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Cholesky:32:
/data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template]
  240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
      |              ^~~~~~~~~~~~~~~~~~~~~
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-clang/cpp11/include' -I'/data/localhost/ripley/R/test-clang/cpp11eigen/include' -I'/data/localhost/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c propose-impl.cpp -o propose-impl.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-clang/cpp11/include' -I'/data/localhost/ripley/R/test-clang/cpp11eigen/include' -I'/data/localhost/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c rectangle.cpp -o rectangle.o
In file included from propose-impl.cpp:11:
In file included from ./rectangle.h:12:
In file included from ./ellipsoid.h:15:
In file included from ./KMeansRexCore.h:35:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/cpp11eigen.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Dense:3:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Cholesky:32:
/data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template]
  240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
      |              ^~~~~~~~~~~~~~~~~~~~~
In file included from propose-impl.cpp:11:
In file included from ./rectangle.h:12:
In file included from ./ellipsoid.h:15:
In file included from ./KMeansRexCore.h:35:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/cpp11eigen.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Dense:7:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Eigenvalues:39:
/data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template]
  839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n)
      |             ^~~~~~~~~~~~~~~~~~~
In file included from rectangle.cpp:10:
In file included from ./rectangle.h:12:
In file included from ./ellipsoid.h:15:
In file included from ./KMeansRexCore.h:35:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/cpp11eigen.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Dense:3:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Cholesky:32:
/data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template]
  240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
      |              ^~~~~~~~~~~~~~~~~~~~~
In file included from rectangle.cpp:10:
In file included from ./rectangle.h:12:
In file included from ./ellipsoid.h:15:
In file included from ./KMeansRexCore.h:35:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/cpp11eigen.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Dense:7:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Eigenvalues:39:
/data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template]
  839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n)
      |             ^~~~~~~~~~~~~~~~~~~
2 warnings generated.
2 warnings generated.
1 warning generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-clang/cpp11/include' -I'/data/localhost/ripley/R/test-clang/cpp11eigen/include' -I'/data/localhost/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c test-bounding.cpp -o test-bounding.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-clang/cpp11/include' -I'/data/localhost/ripley/R/test-clang/cpp11eigen/include' -I'/data/localhost/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c test-random_vector.cpp -o test-random_vector.o
In file included from test-random_vector.cpp:13:
In file included from ./utils.h:15:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/cpp11eigen.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Dense:3:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Cholesky:32:
/data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template]
  240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
      |              ^~~~~~~~~~~~~~~~~~~~~
In file included from test-random_vector.cpp:13:
In file included from ./utils.h:15:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/cpp11eigen.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Dense:7:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Eigenvalues:39:
/data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template]
  839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n)
      |             ^~~~~~~~~~~~~~~~~~~
2 warnings generated.
In file included from test-bounding.cpp:12:
In file included from ./ellipsoid.h:15:
In file included from ./KMeansRexCore.h:35:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/cpp11eigen.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Dense:3:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Cholesky:32:
/data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template]
  240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
      |              ^~~~~~~~~~~~~~~~~~~~~
In file included from test-bounding.cpp:12:
In file included from ./ellipsoid.h:15:
In file included from ./KMeansRexCore.h:35:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/cpp11eigen.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Dense:7:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Eigenvalues:39:
/data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template]
  839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n)
      |             ^~~~~~~~~~~~~~~~~~~
2 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-clang/cpp11/include' -I'/data/localhost/ripley/R/test-clang/cpp11eigen/include' -I'/data/localhost/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c test-runner.cpp -o test-runner.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-clang/cpp11/include' -I'/data/localhost/ripley/R/test-clang/cpp11eigen/include' -I'/data/localhost/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c update_lrps-impl.cpp -o update_lrps-impl.o
In file included from update_lrps-impl.cpp:16:
In file included from ./ellipsoid.h:15:
In file included from ./KMeansRexCore.h:35:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/cpp11eigen.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Dense:3:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Cholesky:32:
/data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template]
  240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
      |              ^~~~~~~~~~~~~~~~~~~~~
In file included from update_lrps-impl.cpp:16:
In file included from ./ellipsoid.h:15:
In file included from ./KMeansRexCore.h:35:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/cpp11eigen.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Dense:7:
In file included from /data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/Eigenvalues:39:
/data/localhost/ripley/R/test-clang/cpp11eigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template]
  839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n)
      |             ^~~~~~~~~~~~~~~~~~~
2 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang23/lib -L/usr/local/clang23/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o ernest.so KMeansRexCore.o cpp11.o ellipsoid.o exported_utils.o propose-impl.o rectangle.o test-bounding.o test-random_vector.o test-runner.o update_lrps-impl.o -L/data/localhost/ripley/R/R-clang/lib -lRlapack -L/data/localhost/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/ernest/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/ernest/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/ernest/src'
installing to /data/localhost/ripley/R/packages/tests-clang/ernest.Rcheck/00LOCK-ernest/00new/ernest/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ernest)