- using R Under development (unstable) (2025-10-09 r88913)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 21.1.2
flang version 21.1.2
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘epocakir/DESCRIPTION’ ... OK
- this is package ‘epocakir’ version ‘0.9.9’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘epocakir’ can be installed ... [8s/20s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [9s/22s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... ERROR
Running examples in ‘epocakir-Ex.R’ failed
The error most likely occurred in:
> ### Name: GFR_staging
> ### Title: GFR Staging
> ### Aliases: GFR_staging GFR_staging.data.frame GFR_staging.units
> ### GFR_staging.numeric
>
> ### ** Examples
>
> df <- tibble::tibble(
+ eGFR = units::set_units(c(-1, NA, 100, 70, 50, 35, 20, 10), "mL/min/1.73m2")
+ )
>
> GFR_staging(df, "eGFR")
Error: cannot convert mL/(min*1.73m^2) into mL/min
Execution halted
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [31s/90s] ERROR
Running ‘testthat.R’ [31s/89s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(epocakir)
>
> test_check("epocakir")
[ FAIL 1 | WARN 9 | SKIP 0 | PASS 598 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ckd.R:378:3'): GFR_staging() ───────────────────────────────────
Error: cannot convert mL/(min*1.73m^2) into mL/min
Backtrace:
▆
1. ├─epocakir::GFR_staging(df, "eGFR") at test-ckd.R:378:3
2. └─epocakir:::GFR_staging.data.frame(df, "eGFR")
3. ├─epocakir::GFR_staging(.data[[rlang::as_name(rlang::enquo(GFR))]])
4. └─epocakir:::GFR_staging.units(.data[[rlang::as_name(rlang::enquo(GFR))]])
5. ├─epocakir::GFR_staging(as_metric(GFR = GFR, value_only = TRUE))
6. └─epocakir::as_metric(GFR = GFR, value_only = TRUE)
7. ├─units::set_units(meas, conversion$metric_units, mode = "standard")
8. └─units:::set_units.units(meas, conversion$metric_units, mode = "standard")
9. ├─base::`units<-`(`*tmp*`, value = as_units(value, ...))
10. └─units:::`units<-.units`(`*tmp*`, value = as_units(value, ...))
[ FAIL 1 | WARN 9 | SKIP 0 | PASS 598 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [8s/23s] OK
- checking PDF version of manual ... [8s/20s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 2 ERRORs