• using R Under development (unstable) (2026-02-03 r89373)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 21.1.8     flang version 21.1.8
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8 * current time: 2026-02-03 12:53:10Z
• using option ‘--no-stop-on-test-error’
• checking for file ‘eesim/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘eesim’ version ‘0.1.0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘eesim’ can be installed ... [8s/12s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [12s/18s] OK
• checking Rd files ... NOTE checkRd: (-1) eesim.Rd:148-151: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eesim.Rd:152-155: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) eesim.Rd:156-158: Lost braces in \itemize; \value handles \item{}{} directly
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking LazyData ... INFO   'LazyData' is specified without a 'data' directory
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... ERROR Running examples in ‘eesim-Ex.R’ failed The error most likely occurred in: > ### Name: calendar_plot > ### Title: Create calendar plot > ### Aliases: calendar_plot > > ### ** Examples > > testdat <- sim_exposure(n = 1000, central = 0.1, + exposure_type = "binary") > testdat$x[c(89,101,367,500,502,598,678,700,895)] <- 3 > calendar_plot(testdat, type = "discrete", labels = c("no", "yes", "maybe")) Error: ! `mutate_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `mutate()` instead. ℹ See vignette('programming') for more help Backtrace:     ▆  1. ├─eesim::calendar_plot(...)  2. │ └─... %>% ...  3. ├─ggplot2::ggplot(., ggplot2::aes_(x = ~Weekday, y = ~Week, fill = ~Exposure))  4. ├─dplyr::ungroup(.)  5. └─dplyr::mutate_(...)  6. └─dplyr:::lazy_defunct("mutate")  7. └─lifecycle::deprecate_stop(...)  8. └─lifecycle:::deprecate_stop0(msg)  9. └─rlang::cnd_signal(...) Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [7s/14s] ERROR Error(s) in re-building vignettes: --- re-building ‘eesim.Rmd’ using rmarkdown Quitting from eesim.Rmd:34-50 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/lifecycle_error_deprecated> Error: ! `tbl_df()` was deprecated in dplyr 1.0.0 and is now defunct. ℹ Please use `tibble::as_tibble()` instead. --- Backtrace:     ▆  1. ├─... %>% ggplot(aes(x = date, y = value))  2. ├─ggplot2::ggplot(., aes(x = date, y = value))  3. ├─tidyr::gather(., variable, value, -date)  4. ├─dplyr::rename(., `Cardiovascular deaths` = cvd, `Ozone concentration (ppb)` = o3)  5. ├─dplyr::select(., date, cvd, o3)  6. ├─dplyr::filter(., year >= 1996)  7. └─dplyr::tbl_df(.)  8. └─lifecycle::deprecate_stop("1.0.0", "tbl_df()", "tibble::as_tibble()")  9. └─lifecycle:::deprecate_stop0(msg) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'eesim.Rmd' failed with diagnostics: `tbl_df()` was deprecated in dplyr 1.0.0 and is now defunct. ℹ Please use `tibble::as_tibble()` instead. --- failed re-building ‘eesim.Rmd’ SUMMARY: processing the following file failed:   ‘eesim.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [8s/12s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 2 ERRORs, 1 NOTE