• using R Under development (unstable) (2026-07-24 r90297)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 22.1.8 (https://github.com/llvm/llvm-project ca7933e47d3a3451d81e72ac174dcb5aa28b59d1)     flang version 22.1.8 (https://github.com/llvm/llvm-project ca7933e47d3a3451d81e72ac174dcb5aa28b59d1)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8 * current time: 2026-07-25 07:08:18 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘duckspatial/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘duckspatial’ version ‘1.2.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘duckspatial’ can be installed ... [26s/57s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [50s/62s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... INFO Undeclared package ‘tidyr’ in Rd xrefs
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... ERROR   Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(duckspatial)   duckspatial 1.2.1 attached   * Compatible with DuckDB >= v1.5.4.2      Default output has changed on v1.0.0:     duckspatial now returns lazy `duckspatial_df` (dbplyr) objects     instead of `sf` objects.      To restore the previous behaviour:     ddbs_options(mode = 'sf')   > library(duckdb)   Loading required package: DBI   >   > test_check("duckspatial")   Reading layer `countries' from data source     `/data/gannet/ripley/R/packages/tests-clang/duckspatial.Rcheck/duckspatial/spatial/countries.geojson'     using driver `GeoJSON'   Simple feature collection with 257 features and 6 fields   Geometry type: POLYGON   Dimension: XY   Bounding box: xmin: -178.9125 ymin: -89.9 xmax: 180 ymax: 83.65187   Geodetic CRS: WGS 84   Reading layer `argentina' from data source     `/data/gannet/ripley/R/packages/tests-clang/duckspatial.Rcheck/duckspatial/spatial/argentina.geojson'     using driver `GeoJSON'   Simple feature collection with 1 feature and 6 fields   Geometry type: POLYGON   Dimension: XY   Bounding box: xmin: -73.52455 ymin: -52.39755 xmax: -53.62409 ymax: -21.81793   Geodetic CRS: WGS 84   duckdb keeps downloaded extensions and secrets in a temporary directory:   ℹ /tmp/RtmpzqWVyB/working_dir/RtmprxmteP/duckdb   This is removed when the R session ends.   • Extensions are re-downloaded each session.   • Secrets are lost.   ℹ Run duckdb(shared_home = TRUE) (or create ~/.duckdb) to keep them (suitable for most users).   ℹ Run duckdb(shared_home = FALSE) to accept the temporary directory (and silence this message).   ℹ See ?duckdb_storage for details and alternatives.   duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled:   • Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107).   • INSTALL/LOAD of an extension will error, and automatic extension loading is off.   ℹ Pass duckdb(allow_extensions = FALSE) to accept this and silence this message.   ℹ Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R).   ℹ See ?duckdb for details.   Error in `source_dir()`:   ! Failed to evaluate './setup.R'.   Caused by error in `ddbs_install()`:   ! Failed to install the spatial extension.   ✖ core: DuckDB extension loading (INSTALL / LOAD) is disabled for this driver.     ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this     may crash R on a Linux build not compiled with libstdc++; see     https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ     Context: load_extension   ✖ community: DuckDB extension loading (INSTALL / LOAD) is disabled for this     driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable     it (this may crash R on a Linux build not compiled with libstdc++; see     https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ     Context: load_extension   ℹ It might not be available for this version of DuckDB, or the install location     may not be writable.   ℹ Check that the extension name is correct:     <https://duckdb.org/docs/extensions/overview>   Backtrace:        ▆     1. └─testthat::test_check("duckspatial")     2. └─testthat::test_dir(...)     3. └─testthat:::test_files(...)     4. └─testthat:::test_files_serial(...)     5. └─testthat:::test_files_setup_state(...)     6. └─testthat::source_test_setup(".", env)     7. └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)     8. └─base::lapply(...)     9. └─testthat (local) FUN(X[[i]], ...)    10. └─testthat::source_file(...)    11. ├─base::withCallingHandlers(...)    12. └─base::eval(exprs, env)    13. └─base::eval(exprs, env)    14. ├─duckspatial::as_duckspatial_df(argentina_sf) at ./setup.R:15:1    15. └─duckspatial:::as_duckspatial_df.sf(argentina_sf)    16. └─duckspatial:::ddbs_default_conn()    17. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...)    18. └─duckspatial::ddbs_install(conn, upgrade = upgrade, quiet = TRUE)    19. └─cli::cli_abort(...)    20. └─rlang::abort(...)   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [57s/70s] ERROR Error(s) in re-building vignettes: --- re-building ‘aw_interpolation.qmd’ using html  [31m processing file: aw_interpolation.qmd  [39m [31mError in `ddbs_install()`: ! Failed to install the spatial extension. ✖ core: DuckDB extension loading (INSTALL / LOAD) is disabled for this driver.   ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this   may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension ✖ community: DuckDB extension loading (INSTALL / LOAD) is disabled for this   driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable   it (this may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension ℹ It might not be available for this version of DuckDB, or the install location   may not be writable. ℹ Check that the extension name is correct:   <https://duckdb.org/docs/extensions/overview> Backtrace:     ▆  1. └─duckspatial::ddbs_interpolate_aw(...)  2. └─duckspatial:::resolve_spatial_connections(...)  3. └─duckspatial:::ddbs_default_conn()  4. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...)  5. └─duckspatial::ddbs_install(conn, upgrade = upgrade, quiet = TRUE)  6. └─cli::cli_abort(...)  7. └─rlang::abort(...)  [39m [31m Quitting from aw_interpolation.qmd:78-89 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `ddbs_install()`: ! Failed to install the spatial extension. ✖ core: DuckDB extension loading (INSTALL / LOAD) is disabled for this driver.   ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this   may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension ✖ community: DuckDB extension loading (INSTALL / LOAD) is disabled for this   driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable   it (this may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension ℹ It might not be available for this version of DuckDB, or the install location   may not be writable. ℹ Check that the extension name is correct:   <https://duckdb.org/docs/extensions/overview> --- Backtrace:     ▆  1. └─duckspatial::ddbs_interpolate_aw(...)  2. └─duckspatial:::resolve_spatial_connections(...)  3. └─duckspatial:::ddbs_default_conn()  4. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...)  5. └─duckspatial::ddbs_install(conn, upgrade = upgrade, quiet = TRUE) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  [39m [31mExecution halted  [39m [33mWARN: Error encountered when rendering files [39m Error: processing vignette 'aw_interpolation.qmd' failed with diagnostics: ! Error running quarto CLI from R. Caused by error in `quarto_render()`: ✖ Error returned by quarto CLI.   -----------------------------         processing file: aw_interpolation.qmd    [31mError in `ddbs_install()`: [39m   ! Failed to install the spatial extension.   ✖ core: DuckDB extension loading (INSTALL / LOAD) is disabled for this   driver.   ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this   may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension   ✖ community: DuckDB extension loading (INSTALL / LOAD) is disabled for this   driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable   it (this may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension   ℹ It might not be available for this version of DuckDB, or the install   location   may not be writable.   ℹ Check that the extension name is correct:   <https://duckdb.org/docs/extensions/overview>   Backtrace:   ▆   1. └─duckspatial::ddbs_interpolate_aw(...)   2. └─duckspatial:::resolve_spatial_connections(...)   3. └─duckspatial:::ddbs_default_conn()   4. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...)   5. └─duckspatial::ddbs_install(conn, upgrade = upgrade, quiet = TRUE)   6. └─cli::cli_abort(...)   7. └─rlang::abort(...)      Quitting from aw_interpolation.qmd:78-89 [unnamed-chunk-2]   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   <error/rlang_error>   Error in `ddbs_install()`:   ! Failed to install the spatial extension.   ✖ core: DuckDB extension loading (INSTALL / LOAD) is disabled for this   driver.   ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this   may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension   ✖ community: DuckDB extension loading (INSTALL / LOAD) is disabled for this   driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable   it (this may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension   ℹ It might not be available for this version of DuckDB, or the install   location   may not be writable.   ℹ Check that the extension name is correct:   <https://duckdb.org/docs/extensions/overview>   ---   Backtrace:   ▆   1. └─duckspatial::ddbs_interpolate_aw(...)   2. └─duckspatial:::resolve_spatial_connections(...)   3. └─duckspatial:::ddbs_default_conn()   4. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...)   5. └─duckspatial::ddbs_install(conn, upgrade = upgrade, quiet = TRUE)   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~       [31mExecution halted [39m    [33mWARN: Error encountered when rendering files [39m    Caused by error in `processx::run()`: ! System command 'quarto' failed --- failed re-building ‘aw_interpolation.qmd’ --- re-building ‘benchmark.qmd’ using html  [31m processing file: benchmark.qmd  [39m [31moutput file: benchmark.knit.md  [39m [1mpandoc [22m   to: html   output-file: benchmark.html   standalone: true   embed-resources: true   wrap: none   default-image-extension: png   css:     - >-       /data/gannet/ripley/R/test-clang/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css   variables: {}     [1mmetadata [22m   document-css: false   lang: en   engines:     - path: /data/gannet/ripley/Sources/quarto-1.9.36/share/extension-subtrees/julia-engine/_extensions/julia-engine/julia-engine.js   minimal: true   theme: none   title: Benchmark   date: '`r Sys.Date()`'   code-annotations: hover   urlcolor: blue   vignette: |     %\VignetteIndexEntry{Benchmark} %\VignetteEngine{quarto::html} %\VignetteEncoding{UTF-8}   knitr:     opts_chunk:       collapse: true       comment: '#>'       out.width: 100%    Output created: benchmark.html --- finished re-building ‘benchmark.qmd’ --- re-building ‘duckspatial.qmd’ using html  [31m processing file: duckspatial.qmd  [39m [31mError in `ddbs_install()`: ! Failed to install the spatial extension. ✖ core: DuckDB extension loading (INSTALL / LOAD) is disabled for this driver.   ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this   may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension ✖ community: DuckDB extension loading (INSTALL / LOAD) is disabled for this   driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable   it (this may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension ℹ It might not be available for this version of DuckDB, or the install location   may not be writable. ℹ Check that the extension name is correct:   <https://duckdb.org/docs/extensions/overview> Backtrace:     ▆  1. └─duckspatial::ddbs_open_dataset(...)  2. └─duckspatial:::ddbs_default_conn()  3. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...)  4. └─duckspatial::ddbs_install(conn, upgrade = upgrade, quiet = TRUE)  5. └─cli::cli_abort(...)  6. └─rlang::abort(...)  [39m [31m Quitting from duckspatial.qmd:78-87 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `ddbs_install()`: ! Failed to install the spatial extension. ✖ core: DuckDB extension loading (INSTALL / LOAD) is disabled for this driver.   ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this   may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension ✖ community: DuckDB extension loading (INSTALL / LOAD) is disabled for this   driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable   it (this may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension ℹ It might not be available for this version of DuckDB, or the install location   may not be writable. ℹ Check that the extension name is correct:   <https://duckdb.org/docs/extensions/overview> --- Backtrace:     ▆  1. └─duckspatial::ddbs_open_dataset(...)  2. └─duckspatial:::ddbs_default_conn()  3. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...)  4. └─duckspatial::ddbs_install(conn, upgrade = upgrade, quiet = TRUE) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  [39m [31mExecution halted  [39m [33mWARN: Error encountered when rendering files [39m Error: processing vignette 'duckspatial.qmd' failed with diagnostics: ! Error running quarto CLI from R. Caused by error in `quarto_render()`: ✖ Error returned by quarto CLI.   -----------------------------         processing file: duckspatial.qmd    [31mError in `ddbs_install()`: [39m   ! Failed to install the spatial extension.   ✖ core: DuckDB extension loading (INSTALL / LOAD) is disabled for this   driver.   ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this   may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension   ✖ community: DuckDB extension loading (INSTALL / LOAD) is disabled for this   driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable   it (this may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension   ℹ It might not be available for this version of DuckDB, or the install   location   may not be writable.   ℹ Check that the extension name is correct:   <https://duckdb.org/docs/extensions/overview>   Backtrace:   ▆   1. └─duckspatial::ddbs_open_dataset(...)   2. └─duckspatial:::ddbs_default_conn()   3. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...)   4. └─duckspatial::ddbs_install(conn, upgrade = upgrade, quiet = TRUE)   5. └─cli::cli_abort(...)   6. └─rlang::abort(...)      Quitting from duckspatial.qmd:78-87 [unnamed-chunk-2]   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   <error/rlang_error>   Error in `ddbs_install()`:   ! Failed to install the spatial extension.   ✖ core: DuckDB extension loading (INSTALL / LOAD) is disabled for this   driver.   ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this   may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension   ✖ community: DuckDB extension loading (INSTALL / LOAD) is disabled for this   driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable   it (this may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension   ℹ It might not be available for this version of DuckDB, or the install   location   may not be writable.   ℹ Check that the extension name is correct:   <https://duckdb.org/docs/extensions/overview>   ---   Backtrace:   ▆   1. └─duckspatial::ddbs_open_dataset(...)   2. └─duckspatial:::ddbs_default_conn()   3. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...)   4. └─duckspatial::ddbs_install(conn, upgrade = upgrade, quiet = TRUE)   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~       [31mExecution halted [39m    [33mWARN: Error encountered when rendering files [39m    Caused by error in `processx::run()`: ! System command 'quarto' failed --- failed re-building ‘duckspatial.qmd’ --- re-building ‘spatial_joins.qmd’ using html  [31m processing file: spatial_joins.qmd  [39m [31mError in `ddbs_install()`: ! Failed to install the spatial extension. ✖ core: DuckDB extension loading (INSTALL / LOAD) is dis [39m [31mabled for this driver.   ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this   may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension ✖ community: DuckDB extension loading (INSTALL / LOAD) is disabled for this   driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable   it (this may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension ℹ It might not be available for this version of DuckDB, or the install location   may not be writable. ℹ Check that the extension name is correct:   <https://duckdb.org/docs/extensions/overview> Backtrace:     ▆  1. └─duckspatial::ddbs_join(x = points_sf, y = countries_sf, join = "within")  2. └─duckspatial:::resolve_spatial_connections(...)  3. └─duckspatial:::ddbs_default_conn()  4. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...)  5. └─duckspatial::ddbs_install(conn, upgrade = upgrade, quiet = TRUE)  6. └─cli::cli_abort(...)  7. └─rlang::abort(...)  [39m [31m Quitting from spatial_joins.qmd:77-87 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [39m [31m~~~~~~~~~~~~~~~ <error/rlang_error> Error in `ddbs_install()`: ! Failed to install the spatial extension. ✖ core: DuckDB extension loading (INSTALL / LOAD) is disabled for this driver.   ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this   may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension ✖ community: DuckDB extension loading (INSTALL / LOAD) is disabled for this   driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable   it (this may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension ℹ It might not be available for this version of DuckDB, or the install location   may not be writable. ℹ Check that the extension name is correct:   <https://duckdb.org/docs/extensions/overview> --- Backtrace:     ▆  1. └─duckspatial::ddbs_join(x = points_sf, y = countries_sf, join = "within")  2. └─duckspatial:::resolve_spatial_connections(...)  3. └─duckspatial:::ddbs_default_conn()  4. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...)  5. └─duckspatial::ddbs_install(conn, upgrade = upgrade, quiet = TRUE) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Execution halted  [39m [33mWARN: Error encountered when rendering files [39m Error: processing vignette 'spatial_joins.qmd' failed with diagnostics: ! Error running quarto CLI from R. Caused by error in `quarto_render()`: ✖ Error returned by quarto CLI.   -----------------------------         processing file: spatial_joins.qmd    [31mError in `ddbs_install()`: [39m   ! Failed to install the spatial extension.   ✖ core: DuckDB extension loading (INSTALL / LOAD) is dis [31mabled for this [39m    [31mdriver. [39m   ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this   may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension   ✖ community: DuckDB extension loading (INSTALL / LOAD) is disabled for this   driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable   it (this may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension   ℹ It might not be available for this version of DuckDB, or the install   location   may not be writable.   ℹ Check that the extension name is correct:   <https://duckdb.org/docs/extensions/overview>   Backtrace:   ▆   1. └─duckspatial::ddbs_join(x = points_sf, y = countries_sf, join = "within")   2. └─duckspatial:::resolve_spatial_connections(...)   3. └─duckspatial:::ddbs_default_conn()   4. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...)   5. └─duckspatial::ddbs_install(conn, upgrade = upgrade, quiet = TRUE)   6. └─cli::cli_abort(...)   7. └─rlang::abort(...)      Quitting from spatial_joins.qmd:77-87 [unnamed-chunk-3]   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [31m~~~~~~~~~~~~~~~ [39m   <error/rlang_error>   Error in `ddbs_install()`:   ! Failed to install the spatial extension.   ✖ core: DuckDB extension loading (INSTALL / LOAD) is disabled for this   driver.   ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this   may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension   ✖ community: DuckDB extension loading (INSTALL / LOAD) is disabled for this   driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable   it (this may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension   ℹ It might not be available for this version of DuckDB, or the install   location   may not be writable.   ℹ Check that the extension name is correct:   <https://duckdb.org/docs/extensions/overview>   ---   Backtrace:   ▆   1. └─duckspatial::ddbs_join(x = points_sf, y = countries_sf, join = "within")   2. └─duckspatial:::resolve_spatial_connections(...)   3. └─duckspatial:::ddbs_default_conn()   4. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...)   5. └─duckspatial::ddbs_install(conn, upgrade = upgrade, quiet = TRUE)   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      Execution halted    [33mWARN: Error encountered when rendering files [39m    Caused by error in `processx::run()`: ! System command 'quarto' failed --- failed re-building ‘spatial_joins.qmd’ SUMMARY: processing the following files failed:   ‘aw_interpolation.qmd’ ‘duckspatial.qmd’ ‘spatial_joins.qmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [18s/23s] OK
• checking HTML version of manual ... [11s/13s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 2 ERRORs