• using R Under development (unstable) (2026-03-30 r89743)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 22.1.2 (https://github.com/llvm/llvm-project 1ab49a973e210e97d61e5db6557180dcb92c3e98)     flang version 22.1.2 (https://github.com/llvm/llvm-project 1ab49a973e210e97d61e5db6557180dcb92c3e98)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8 * current time: 2026-03-30 19:03:38 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘duckspatial/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘duckspatial’ version ‘1.0.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘duckspatial’ can be installed ... [20s/50s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s/11s] OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... [3s/11s] OK
• checking loading without being on the library search path ... [3s/14s] OK
• checking whether startup messages can be suppressed ... [3s/13s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [39s/174s] OK
• checking Rd files ... [2s/10s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [5s/19s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [8s/24s] ERROR   Running ‘testthat.R’ [7s/23s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(duckspatial)   duckspatial 1.0.0 attached   * Compatible with DuckDB v1.5.1   * This release introduces breaking changes   * See full release notes for migration guidance      Default output has changed:     duckspatial now returns lazy `duckspatial_df` (dbplyr) objects     instead of `sf` objects.      To restore the previous behaviour:     ddbs_options(duckspatial.mode = 'sf')   > library(duckdb)   Loading required package: DBI   >   > test_check("duckspatial")   Reading layer `countries' from data source     `/data/gannet/ripley/R/packages/tests-clang/duckspatial.Rcheck/duckspatial/spatial/countries.geojson'     using driver `GeoJSON'   Simple feature collection with 257 features and 6 fields   Geometry type: POLYGON   Dimension: XY   Bounding box: xmin: -178.9125 ymin: -89.9 xmax: 180 ymax: 83.65187   Geodetic CRS: WGS 84   Reading layer `argentina' from data source     `/data/gannet/ripley/R/packages/tests-clang/duckspatial.Rcheck/duckspatial/spatial/argentina.geojson'     using driver `GeoJSON'   Simple feature collection with 1 feature and 6 fields   Geometry type: POLYGON   Dimension: XY   Bounding box: xmin: -73.52455 ymin: -52.39755 xmax: -53.62409 ymax: -21.81793   Geodetic CRS: WGS 84   Error in `source_dir()`:   ! Failed to evaluate './setup.R'.   Caused by error in `duckdb_result()`:   ! Invalid Error: Invalid Input Error: Initialization function "spatial_duckdb_cpp_init" from file "/data/gannet/ripley/.local/share/R/duckdb/extensions/v1.5.1/linux_amd64/spatial.duckdb_extension" threw an exception: "Missing DB manager"   ℹ Context: rapi_execute   ℹ Error type: INVALID   Backtrace:        ▆     1. ├─testthat::test_check("duckspatial")     2. │ └─testthat::test_dir(...)     3. │ └─testthat:::test_files(...)     4. │ └─testthat:::test_files_serial(...)     5. │ └─testthat:::test_files_setup_state(...)     6. │ └─testthat::source_test_setup(".", env)     7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)     8. │ └─base::lapply(...)     9. │ └─testthat (local) FUN(X[[i]], ...)    10. │ └─testthat::source_file(...)    11. │ ├─base::withCallingHandlers(...)    12. │ └─base::eval(exprs, env)    13. │ └─base::eval(exprs, env)    14. │ ├─duckspatial::as_duckspatial_df(argentina_sf) at ./setup.R:15:1    15. │ └─duckspatial:::as_duckspatial_df.sf(argentina_sf)    16. │ └─duckspatial:::ddbs_default_conn()    17. │ └─duckspatial::ddbs_create_conn(dbdir = "memory", ...)    18. │ └─duckspatial::ddbs_load(conn, quiet = TRUE)    19. │ ├─base::suppressMessages(DBI::dbExecute(conn, glue::glue("LOAD {extension};")))    20. │ │ └─base::withCallingHandlers(...)    21. │ ├─DBI::dbExecute(conn, glue::glue("LOAD {extension};"))    22. │ └─DBI::dbExecute(conn, glue::glue("LOAD {extension};"))    23. │ ├─DBI::dbSendStatement(conn, statement, ...)    24. │ └─DBI::dbSendStatement(conn, statement, ...)    25. │ ├─DBI::dbSendQuery(conn, statement, ...)    26. │ └─duckdb::dbSendQuery(conn, statement, ...)    27. │ └─duckdb (local) .local(conn, statement, ...)    28. │ └─duckdb:::duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)    29. │ └─duckdb:::duckdb_execute(res)    30. │ └─duckdb:::rethrow_rapi_execute(...)    31. │ ├─rlang::try_fetch(...)    32. │ │ ├─base::tryCatch(...)    33. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)    34. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])    35. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)    36. │ │ └─base::withCallingHandlers(...)    37. │ └─duckdb:::rapi_execute(stmt, convert_opts)    38. ├─duckdb (local) `<fn>`(...)    39. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)    40. │ └─rlang:::signal_abort(cnd, .file)    41. │ └─base::signalCondition(cnd)    42. └─rlang (local) `<fn>`(`<dckdb_rr>`)    43. └─handlers[[1L]](cnd)    44. └─duckdb:::rethrow_error_from_rapi(e, call)    45. └─rlang::abort(msg, call = call)   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [62s/183s] ERROR Error(s) in re-building vignettes: --- re-building ‘aw_interpolation.qmd’ using html  [31m processing file: aw_interpolation.qmd  [39m [31mError in `duckdb_result()`: ! Invalid Error: Invalid Input Error: Initialization function "spatial_duckdb_cpp_init" from file "/data/gannet/ripley/.local/share/R/duckdb/extensions/v1.5.1/linux_amd64/spatial.duckdb_extension" threw an exception: "Missing DB manager" ℹ Context: rapi_execute ℹ Error type: INVALID Backtrace:      ▆   1. ├─duckspatial::ddbs_interpolate_aw(...)   2. │ └─duckspatial:::resolve_spatial_connections(...)   3. │ └─duckspatial:::ddbs_default_conn()   4. │ └─duckspatial::ddbs_create_conn(dbdir = "memory", ...)   5. │ └─duckspatial::ddbs_load(conn, quiet = TRUE)   6. │ ├─base::suppressMessages(DBI::dbExecute(conn, glue::glue("LOAD {extension};")))   7. │ │ └─base::withCallingHandlers(...)   8. │ ├─DBI::dbExecute(conn, glue::glue("LOAD {extension};"))   9. │ └─DBI::dbExecute(conn, glue::glue("LOAD {extension};"))  10. │ ├─DBI::dbSendStatement(conn, statement, ...)  11. │ └─DBI::dbSendStatement(conn, statement, ...)  12. │ ├─DBI::dbSendQuery(conn, statement, ...)  13. │ └─duckdb::dbSendQuery(conn, statement, ...)  14. │ └─duckdb (local) .local(conn, statement, ...)  15. │ └─duckdb:::duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)  16. │ └─duckdb:::duckdb_execute(res)  17. │ └─duckdb:::rethrow_rapi_execute(...)  18. │ ├─rlang::try_fetch(...)  19. │ │ ├─base::tryCatch(...)  20. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)  21. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])  22. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)  23. │ │ └─base::withCallingHandlers(...)  24. │ └─duckdb:::rapi_execute(stmt, convert_opts)  25. ├─duckdb (local) `<fn>`(...)  26. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)  27. │ └─rlang:::signal_abort(cnd, .file)  28. │ └─base::signalCondition(cnd)  29. └─rlang (local) `<fn>`(`<dckdb_rr>`)  30. └─handlers[[1L]](cnd)  31. └─duckdb:::rethrow_error_from_rapi(e, call)  32. └─rlang::abort(msg, call = call)  [39m [31m Quitting from aw_interpolation.qmd:68-79 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `duckdb_result()`: ! Invalid Error: Invalid Input Error: Initialization function "spatial_duckdb_cpp_init" from file "/data/gannet/ripley/.local/share/R/duckdb/extensions/v1.5.1/linux_amd64/spatial.duckdb_extension" threw an exception: "Missing DB manager" ℹ Context: rapi_execute ℹ Error type: INVALID --- Backtrace:      ▆   1. └─duckspatial::ddbs_interpolate_aw(...)   2. └─duckspatial:::resolve_spatial_connections(...)   3. └─duckspatial:::ddbs_default_conn()   4. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...)   5. └─duckspatial::ddbs_load(conn, quiet = TRUE)   6. ├─base::suppressMessages(DBI::dbExecute(conn, glue::glue("LOAD {extension};")))   7. │ └─base::withCallingHandlers(...)   8. ├─DBI::dbExecute(conn, glue::glue("LOAD {extension};"))   9. └─DBI::dbExecute(conn, glue::glue("LOAD {extension};"))  10. ├─DBI::dbSendStatement(conn, statement, ...)  11. └─DBI::dbSendStatement(conn, statement, ...)  12. ├─DBI::dbSendQuery(conn, statement, ...)  13. └─duckdb::dbSendQuery(conn, statement, ...)  14. └─duckdb (local) .local(conn, statement, ...)  15. └─duckdb:::duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Execution halted  [39m [33mWARN: Error encountered when rendering files [39m Error: processing vignette 'aw_interpolation.qmd' failed with diagnostics: ! Error running quarto CLI from R. Caused by error: ! Could not evaluate cli `{}` expression: `extension`. Caused by error: ! object 'extension' not found --- failed re-building ‘aw_interpolation.qmd’ --- re-building ‘benchmark.qmd’ using html  [31m processing file: benchmark.qmd  [39m [31moutput file: benchmark.knit.md  [39m [1mpandoc [22m   to: html   output-file: benchmark.html   standalone: true   embed-resources: true   wrap: none   default-image-extension: png   css:     - >-       /data/gannet/ripley/R/test-clang/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css   variables: {}     [1mmetadata [22m   document-css: false   lang: en   engines:     - path: /data/gannet/ripley/Sources/quarto-1.9.36/share/extension-subtrees/julia-engine/_extensions/julia-engine/julia-engine.js   minimal: true   theme: none   title: Benchmark   date: '`r Sys.Date()`'   code-annotations: hover   urlcolor: blue   vignette: |     %\VignetteIndexEntry{Benchmark} %\VignetteEngine{quarto::html} %\VignetteEncoding{UTF-8}   knitr:     opts_chunk:       collapse: true       comment: '#>'       out.width: 100%    Output created: benchmark.html --- finished re-building ‘benchmark.qmd’ --- re-building ‘duckspatial.qmd’ using html  [31m processing file: duckspatial.qmd  [39m [31mError in `duckdb_result()`: ! Invalid Error: Invalid Input Error: Initialization function "spatial_duckdb_cpp_init" from file "/data/gannet/ripley/.local/share/R/duckdb/extensions/v1.5.1/linux_amd64/spatial.duckdb_extension" threw an exception: "Missing DB manager" ℹ Context: rapi_execute ℹ Error type: INVALID Backtrace:      ▆   1. ├─duckspatial::ddbs_open_dataset(...)   2. │ └─duckspatial:::ddbs_default_conn()   3. │ └─duckspatial::ddbs_create_conn(dbdir = "memory", ...)   4. │ └─duckspatial::ddbs_load(conn, quiet = TRUE)   5. │ ├─base::suppressMessages(DBI::dbExecute(conn, glue::glue("LOAD {extension};")))   6. │ │ └─base::withCallingHandlers(...)   7. │ ├─DBI::dbExecute(conn, glue::glue("LOAD {extension};"))   8. │ └─DBI::dbExecute(conn, glue::glue("LOAD {extension};"))   9. │ ├─DBI::dbSendStatement(conn, statement, ...)  10. │ └─DBI::dbSendStatement(conn, statement, ...)  11. │ ├─DBI::dbSendQuery(conn, statement, ...)  12. │ └─duckdb::dbSendQuery(conn, statement, ...)  13. │ └─duckdb (local) .local(conn, statement, ...)  14. │ └─duckdb:::duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)  15. │ └─duckdb:::duckdb_execute(res)  16. │ └─duckdb:::rethrow_rapi_execute(...)  17. │ ├─rlang::try_fetch(...)  18. │ │ ├─base::tryCatch(...)  19. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)  20. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])  21. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)  22. │ │ └─base::withCallingHandlers(...)  23. │ └─duckdb:::rapi_execute(stmt, convert_opts)  24. ├─duckdb (local) `<fn>`(...)  25. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)  26. │ └─rlang:::signal_abort(cnd, .file)  27. │ └─base::signalCondition(cnd)  28. └─rlang (local) `<fn>`(`<dckdb_rr>`)  29. └─handlers[[1L]](cnd)  30. └─duckdb:::rethrow_error_from_rapi(e, call)  31. └─rlang::abort(msg, call = call)  [39m [31m Quitting from duckspatial.qmd:68-77 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `duckdb_result()`: ! Invalid Error: Invalid Input Error: Initialization function "spatial_duckdb_cpp_init" from file "/data/gannet/ripley/.local/share/R/duckdb/extensions/v1.5.1/linux_amd64/spatial.duckdb_extension" threw an exception: "Missing DB manager" ℹ Context: rapi_execute ℹ Error type: INVALID --- Backtrace:      ▆   1. └─duckspatial::ddbs_open_dataset(...)   2. └─duckspatial:::ddbs_default_conn()   3. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...)   4. └─duckspatial::ddbs_load(conn, quiet = TRUE)   5. ├─base::suppressMessages(DBI::dbExecute(conn, glue::glue("LOAD {extension};")))   6. │ └─base::withCallingHandlers(...)   7. ├─DBI::dbExecute(conn, glue::glue("LOAD {extension};"))   8. └─DBI::dbExecute(conn, glue::glue("LOAD {extension};"))   9. ├─DBI::dbSendStatement(conn, statement, ...)  10. └─DBI::dbSendStatement(conn, statement, ...)  11. ├─DBI::dbSendQuery(conn, statement, ...)  12. └─duckdb::dbSendQuery(conn, statement, ...)  13. └─duckdb (local) .local(conn, statement, ...)  14. └─duckdb:::duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Execution halted  [39m [33mWARN: Error encountered when rendering files [39m Error: processing vignette 'duckspatial.qmd' failed with diagnostics: ! Error running quarto CLI from R. Caused by error: ! Could not evaluate cli `{}` expression: `extension`. Caused by error: ! object 'extension' not found --- failed re-building ‘duckspatial.qmd’ --- re-building ‘spatial_joins.qmd’ using html  [31m processing file: spatial_joins.qmd  [39m [31m[gannet:4105154:0:4106529] Caught signal 11 (Segmentation fault: address not mapped to object at address 0x100000002)  [39m [31m==== backtrace (tid:4106529) ====  0 /lib64/libucs.so.0(ucs_handle_error+0x2e4) [0x7ffb6e3b7df4]  1 /lib64/libucs.so.0(+0x17aed) [0x7ffb6e3b9aed]  2 /lib64/libucs.so.0(+0x17cbd) [0x7ffb6e3b9cbd]  3 /lib64/libc.so.6(+0x1a040) [0x7ffb84928040]  4 /data/gannet/ripley/.local/share/R/duckdb/extensions/v1.5.1/linux_amd64/spatial.duckdb_extension(+0xc17cc8) [0x7ffa44817cc8]  5 /data/gannet/ripley/.local/share/R/duckdb/extensions/v1.5.1/linux_amd64/spatial.duckdb_extension(+0xc1b387) [0x7ffa4481b387]  6 /data/gannet/ripley/.local/share/R/duckdb/extensions/v1.5.1/linux_amd64/spatial.duckdb_extension(+0xc1b504) [0x7ffa4481b504]  7 /data/gannet/ripley/.local/share/R/duckdb/extensions/v1.5.1/linux_amd64/spatial.duckdb_extension(+0x11442ea) [0x7ffa44d442ea]  8 /data/gannet/ripley/.local/share/R/duckdb/extensions/v1.5.1/linux_amd64/spatial.duckdb_extension(+0x758844) [0x7ffa44358844]  9 /data/gannet/ripley/.local/share/R/duckdb/extensions/v1.5.1/linux_amd64/spatial.duckdb_extension(+0x756bd9) [0x7ffa44356bd9] 10 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb15ExtensionHelper29LoadExternalExtensionInternalERNS_16DatabaseInstanceERNS_10FileSystemERKNSt3__112basic_stringIcNS5_11char_traitsIcEENS5_9allocatorIcEEEERNS_19ExtensionActiveLoadE+0x195) [0x7ffaa7079825] 11 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb15ExtensionHelper21LoadExternalExtensionERNS_16DatabaseInstanceERNS_10FileSystemERKNSt3__112basic_stringIcNS5_11char_traitsIcEENS5_9allocatorIcEEEE+0x4a) [0x7ffaa70795ca] 12 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZNK6duckdb12PhysicalLoad15GetDataInternalERNS_16ExecutionContextERNS_9DataChunkERNS_19OperatorSourceInputE+0x151) [0x7ffaa7e6c831] 13 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb16PipelineExecutor15FetchFromSourceERNS_9DataChunkE+0x9b) [0x7ffaa8693fdb] 14 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb16PipelineExecutor7ExecuteEm+0x146) [0x7ffaa8690bb6] 15 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb12PipelineTask11ExecuteTaskENS_17TaskExecutionModeE+0x154) [0x7ffaa8690824] 16 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb12ExecutorTask7ExecuteENS_17TaskExecutionModeE+0xa0) [0x7ffaa868a5a0] 17 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb13TaskScheduler14ExecuteForeverEPNSt3__16atomicIbEE+0x39a) [0x7ffaa869720a] 18 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(+0x1aa2ccc) [0x7ffaa86a2ccc] 19 /lib64/libc.so.6(+0x71f14) [0x7ffb8497ff14] 20 /lib64/libc.so.6(+0xf532c) [0x7ffb84a0332c] =================================  *** caught segfault *** address 0x4d2003ea3c2, cause 'unknown' Traceback:  1: rapi_execute(stmt, convert_opts)  2: withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }})  3: doTryCatch(return(expr), name, parentenv, handler)  4: tryCatchOne(expr, names, parentenv, handlers[[1L]])  5: tryCatchList(expr, classes, parentenv, handlers)  6: tryCatch(withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }}), stackOverflowError = handlers[[1L]])  7: rlang::try_fetch(rapi_execute(stmt, convert_opts), error = function(e) { rethrow_error_from_rapi(e, call)})  8: rethrow_rapi_execute(res@stmt_lst$ref, duckdb_convert_opts_impl(res@connection@convert_opts, arrow = res@arrow))  9: duckdb_execute(res) 10: duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow) 11: .local(conn, statement, ...) 12: dbSendQuery(conn, statement, ...) 13: dbSendQuery(conn, statement, ...) 14: dbSendStatement(conn, statement, ...) 15: dbSendStatement(conn, statement, ...) 16: DBI::dbExecute(conn, glue::glue("LOAD {extension};")) 17: DBI::dbExecute(conn, glue::glue("LOAD {extension};")) 18: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage")) 19: suppressMessages(DBI::dbExecute(conn, glue::glue("LOAD {extension};"))) 20: ddbs_load(conn, quiet = TRUE) 21: ddbs_create_conn(dbdir = "memory", ...) 22: ddbs_default_conn() 23: resolve_spatial_connections(x, y, conn, conn_x, conn_y, quiet = quiet) 24: ddbs_join(x = points_sf, y = countries_sf, join = "within") 25: eval(expr, envir) 26: eval(expr, envir) 27: withVisible(eval(expr, envir)) 28: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)}) 29: eval(call) 30: eval(call) 31: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers) 32: doWithOneRestart(return(expr), restart) 33: withOneRestart(expr, restarts[[1L]]) 34: withRestartList(expr, restarts[-nr]) 35: doWithOneRestart(return(expr), restart) 36: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) 37: withRestartList(expr, restarts) 38: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE) 39: evaluate::evaluate(...) 40: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)) 41: in_dir(input_dir(), expr) 42: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))) 43: eng_r(options) 44: block_exec(params) 45: call_block(x) 46: process_group(group) 47: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }) 48: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())) 49: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc) 50: process_file(text, output) 51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 52: rmarkdown::render(input = input, output_format = output_format, knit_root_dir = knit_root_dir, params = params, run_pandoc = FALSE, envir = env) 53: execute(params$input, params$format, params$tempDir, params$libDir, params$dependencies, params$cwd, params$params, params$resourceDir, params$handledLanguages, params$markdown) 54: .main() An irrecoverable exception occurred. R is aborting now ...  [39m [33mWARN: Error encountered when rendering files [39m Error: processing vignette 'spatial_joins.qmd' failed with diagnostics: ! Error running quarto CLI from R. Caused by error: ! Could not parse cli `{}` expression: ` { .__han…`. Caused by error: ! <text>:1:49: unexpected symbol 1: { .__handler_frame__. <- TRUE .__setup_frame__.                                                     ^ --- failed re-building ‘spatial_joins.qmd’ SUMMARY: processing the following files failed:   ‘aw_interpolation.qmd’ ‘duckspatial.qmd’ ‘spatial_joins.qmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [16s/60s] OK
• checking HTML version of manual ... [17s/51s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 2 ERRORs