• using R Under development (unstable) (2026-07-24 r90297)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 22.1.8 (https://github.com/llvm/llvm-project ca7933e47d3a3451d81e72ac174dcb5aa28b59d1)     flang version 22.1.8 (https://github.com/llvm/llvm-project ca7933e47d3a3451d81e72ac174dcb5aa28b59d1)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8 * current time: 2026-07-25 07:07:18 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘duckh3/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘duckh3’ version ‘0.1.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘duckh3’ can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/17s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [5s/14s] ERROR Running examples in ‘duckh3-Ex.R’ failed The error most likely occurred in: > ### Name: ddbh3_get_child_pos > ### Title: Get the position of an H3 cell within its parent > ### Aliases: ddbh3_get_child_pos > > ### ** Examples > > ## Load needed packages > library(duckh3) > library(dplyr) Attaching package: ‘dplyr’ The following objects are masked from ‘package:stats’:     filter, lag The following objects are masked from ‘package:base’:     intersect, setdiff, setequal, union > > ## Setup the default connection with h3 and spatial extensions > ## This is a mandatory step to use duckh3 functions > ddbh3_default_conn(threads = 1) duckdb keeps downloaded extensions and secrets in a temporary directory: ℹ /tmp/Rtmp7oBkLw/working_dir/RtmpRhFcH1/duckdb This is removed when the R session ends. • Extensions are re-downloaded each session. • Secrets are lost. ℹ Run duckdb(shared_home = TRUE) (or create ~/.duckdb) to keep them (suitable for most users). ℹ Run duckdb(shared_home = FALSE) to accept the temporary directory (and silence this message). ℹ See ?duckdb_storage for details and alternatives. duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled: • Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107). • INSTALL/LOAD of an extension will error, and automatic extension loading is off. ℹ Pass duckdb(allow_extensions = FALSE) to accept this and silence this message. ℹ Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R). ℹ See ?duckdb for details. Error in `ddbs_install()`: ! Failed to install the spatial extension. ✖ core: DuckDB extension loading (INSTALL / LOAD) is disabled for this driver.   ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this   may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension ✖ community: DuckDB extension loading (INSTALL / LOAD) is disabled for this   driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable   it (this may crash R on a Linux build not compiled with libstdc++; see   https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ   Context: load_extension ℹ It might not be available for this version of DuckDB, or the install location   may not be writable. ℹ Check that the extension name is correct:   <https://duckdb.org/docs/extensions/overview> Backtrace:     ▆  1. └─duckh3::ddbh3_default_conn(threads = 1)  2. └─duckspatial::ddbs_create_conn(...)  3. └─duckspatial::ddbs_install(conn, upgrade = upgrade, quiet = TRUE)  4. └─cli::cli_abort(...)  5. └─rlang::abort(...) Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [6s/11s] ERROR   Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(duckh3)   >   > test_check("duckh3")   duckdb keeps downloaded extensions and secrets in a temporary directory:   ℹ /tmp/Rtmp7oBkLw/working_dir/Rtmp0mxuyq/duckdb   This is removed when the R session ends.   • Extensions are re-downloaded each session.   • Secrets are lost.   ℹ Run duckdb(shared_home = TRUE) (or create ~/.duckdb) to keep them (suitable for most users).   ℹ Run duckdb(shared_home = FALSE) to accept the temporary directory (and silence this message).   ℹ See ?duckdb_storage for details and alternatives.   duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled:   • Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107).   • INSTALL/LOAD of an extension will error, and automatic extension loading is off.   ℹ Pass duckdb(allow_extensions = FALSE) to accept this and silence this message.   ℹ Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R).   ℹ See ?duckdb for details.   Error in `source_dir()`:   ! Failed to evaluate './setup.R'.   Caused by error in `ddbs_install()`:   ! Failed to install the spatial extension.   ✖ core: DuckDB extension loading (INSTALL / LOAD) is disabled for this driver.     ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this     may crash R on a Linux build not compiled with libstdc++; see     https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ     Context: load_extension   ✖ community: DuckDB extension loading (INSTALL / LOAD) is disabled for this     driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable     it (this may crash R on a Linux build not compiled with libstdc++; see     https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ     Context: load_extension   ℹ It might not be available for this version of DuckDB, or the install location     may not be writable.   ℹ Check that the extension name is correct:     <https://duckdb.org/docs/extensions/overview>   Backtrace:        ▆     1. └─testthat::test_check("duckh3")     2. └─testthat::test_dir(...)     3. └─testthat:::test_files(...)     4. └─testthat:::test_files_serial(...)     5. └─testthat:::test_files_setup_state(...)     6. └─testthat::source_test_setup(".", env)     7. └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)     8. └─base::lapply(...)     9. └─testthat (local) FUN(X[[i]], ...)    10. └─testthat::source_file(...)    11. ├─base::withCallingHandlers(...)    12. └─base::eval(exprs, env)    13. └─base::eval(exprs, env)    14. └─duckh3::ddbh3_default_conn() at ./setup.R:12:1    15. └─duckspatial::ddbs_create_conn(...)    16. └─duckspatial::ddbs_install(conn, upgrade = upgrade, quiet = TRUE)    17. └─cli::cli_abort(...)    18. └─rlang::abort(...)   Execution halted
• checking PDF version of manual ... [8s/16s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 2 ERRORs