* installing *source* package ‘drmTMB’ ...
** this is package ‘drmTMB’ version ‘0.7.0’
** package ‘drmTMB’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 23.1.1’
using C++ compiler: ‘clang version 23.1.1’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/drmTMB/src'
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/TMB/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c drmTMB.cpp -o drmTMB.o
In file included from drmTMB.cpp:14:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from drmTMB.cpp:14:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
/usr/local/clang23/bin/clang-23 -std=gnu23 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/TMB/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o
drmTMB.cpp:1254:16: warning: unused variable 'sigma_i' [-Wunused-variable]
1254 | Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
| ^~~~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tmb_core.hpp:2045:34: note: in instantiation of member function 'objective_function<double>::operator()' requested here
2045 | PROTECT( res = asSEXP( pf->operator()() ) );
| ^
/data/localhost/ripley/R/R-clang/include/Rinternals.h:357:31: note: expanded from macro 'PROTECT'
357 | #define PROTECT(s) Rf_protect(s)
| ^
drmTMB.cpp:1337:18: warning: unused variable 'sigma_i' [-Wunused-variable]
1337 | Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
| ^~~~~~~
drmTMB.cpp:1417:18: warning: unused variable 'sigma_i' [-Wunused-variable]
1417 | Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
| ^~~~~~~
drmTMB.cpp:1502:18: warning: unused variable 'sigma_i' [-Wunused-variable]
1502 | Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
| ^~~~~~~
drmTMB.cpp:1640:18: warning: unused variable 'sigma_i' [-Wunused-variable]
1640 | Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
| ^~~~~~~
drmTMB.cpp:1771:18: warning: unused variable 'sigma_i' [-Wunused-variable]
1771 | Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
| ^~~~~~~
drmTMB.cpp:1833:18: warning: unused variable 'sigma_i' [-Wunused-variable]
1833 | Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
| ^~~~~~~
drmTMB.cpp:1915:18: warning: unused variable 'sigma_i' [-Wunused-variable]
1915 | Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
| ^~~~~~~
drmTMB.cpp:2019:18: warning: unused variable 'sigma_i' [-Wunused-variable]
2019 | Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
| ^~~~~~~
drmTMB.cpp:2100:18: warning: unused variable 'sigma_i' [-Wunused-variable]
2100 | Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
| ^~~~~~~
drmTMB.cpp:2184:18: warning: unused variable 'sigma_i' [-Wunused-variable]
2184 | Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
| ^~~~~~~
drmTMB.cpp:2277:18: warning: unused variable 'sigma_i' [-Wunused-variable]
2277 | Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
| ^~~~~~~
15 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang23/lib -L/usr/local/clang23/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o drmTMB.so drmTMB.o init.o
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/drmTMB/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/drmTMB/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/drmTMB/src'
installing to /data/localhost/ripley/R/packages/tests-clang/drmTMB.Rcheck/00LOCK-drmTMB/00new/drmTMB/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (drmTMB)