Install log for 'dodgr'

* installing *source* package ‘dodgr’ ...
** this is package ‘dodgr’ version ‘0.4.3’
** package ‘dodgr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 23.1.0’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/dodgr/src'
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c heaps/bheap.cpp -o heaps/bheap.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c heaps/fheap.cpp -o heaps/fheap.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c heaps/heap23.cpp -o heaps/heap23.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c heaps/triheap_ext.cpp -o heaps/triheap_ext.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c heaps/triheap.cpp -o heaps/triheap.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c centrality.cpp -o centrality.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c concaveman.cpp -o concaveman.o
In file included from concaveman.cpp:1:
./concaveman.h:694:38: warning: unused typedef 'circ_elem_type' [-Wunused-local-typedef]
  694 |     typedef CircularElement<Node<T>> circ_elem_type;
      |                                      ^
1 warning generated.
In file included from centrality.cpp:1:
In file included from ./run_sp.h:13:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:23:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/detail/_task.h:89:13: warning: unused function template 'suspend_callback' [-Wunused-template]
   89 | static void suspend_callback(void* user_callback, suspend_point sp) {
      |             ^~~~~~~~~~~~~~~~
In file included from centrality.cpp:1:
In file included from ./run_sp.h:13:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:27:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/partitioner.h:47:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/task_group.h:130:15: warning: unused function template 'task_ptr_or_nullptr' [-Wunused-template]
  130 |     d1::task* task_ptr_or_nullptr(F&& f){
      |               ^~~~~~~~~~~~~~~~~~~
2 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c deduplicate.cpp -o deduplicate.o
In file included from deduplicate.cpp:2:
In file included from ./deduplicate.h:11:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:23:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/detail/_task.h:89:13: warning: unused function template 'suspend_callback' [-Wunused-template]
   89 | static void suspend_callback(void* user_callback, suspend_point sp) {
      |             ^~~~~~~~~~~~~~~~
In file included from deduplicate.cpp:2:
In file included from ./deduplicate.h:11:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:27:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/partitioner.h:47:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/task_group.h:130:15: warning: unused function template 'task_ptr_or_nullptr' [-Wunused-template]
  130 |     d1::task* task_ptr_or_nullptr(F&& f){
      |               ^~~~~~~~~~~~~~~~~~~
2 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c dgraph.cpp -o dgraph.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c pathfinders.cpp -o pathfinders.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c dodgr-to-sf.cpp -o dodgr-to-sf.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c flows.cpp -o flows.o
In file included from flows.cpp:2:
In file included from ./run_sp.h:13:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:23:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/detail/_task.h:89:13: warning: unused function template 'suspend_callback' [-Wunused-template]
   89 | static void suspend_callback(void* user_callback, suspend_point sp) {
      |             ^~~~~~~~~~~~~~~~
In file included from flows.cpp:2:
In file included from ./run_sp.h:13:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:27:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/partitioner.h:47:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/task_group.h:130:15: warning: unused function template 'task_ptr_or_nullptr' [-Wunused-template]
  130 |     d1::task* task_ptr_or_nullptr(F&& f){
      |               ^~~~~~~~~~~~~~~~~~~
2 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c fund-cycles.cpp -o fund-cycles.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c graph-contract.cpp -o graph-contract.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c graph.cpp -o graph.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c graph-sample.cpp -o graph-sample.o
graph.cpp:198:10: warning: variable 'has_times' set but not used [-Wunused-but-set-variable]
  198 |     bool has_times = graph::graph_from_df (graph, vertices, edge_map, vert2edge_map);
      |          ^
graph.cpp:202:12: warning: variable 'largest_component' set but not used [-Wunused-but-set-variable]
  202 |     size_t largest_component =
      |            ^
graph-sample.cpp:109:10: warning: variable 'has_times' set but not used [-Wunused-but-set-variable]
  109 |     bool has_times = graph::graph_from_df (graph, vertices, edge_map, vert2edge_map);
      |          ^
2 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c match-points.cpp -o match-points.o
1 warning generated.
match-points.cpp:99:17: warning: variable 'which_side' set but not used [-Wunused-but-set-variable]
   99 |             int which_side = INFINITE_INT;
      |                 ^
In file included from match-points.cpp:1:
In file included from ./match-points.h:6:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:23:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/detail/_task.h:89:13: warning: unused function template 'suspend_callback' [-Wunused-template]
   89 | static void suspend_callback(void* user_callback, suspend_point sp) {
      |             ^~~~~~~~~~~~~~~~
In file included from match-points.cpp:1:
In file included from ./match-points.h:6:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:27:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/partitioner.h:47:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/task_group.h:130:15: warning: unused function template 'task_ptr_or_nullptr' [-Wunused-template]
  130 |     d1::task* task_ptr_or_nullptr(F&& f){
      |               ^~~~~~~~~~~~~~~~~~~
3 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:5:
In file included from /data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/localhost/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
2 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c run_sp.cpp -o run_sp.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c run_sp_categorical.cpp -o run_sp_categorical.o
run_sp.cpp:350:28: warning: unused variable 'st_prev' [-Wunused-variable]
  350 |                     size_t st_prev = static_cast <size_t> (prev [j]);
      |                            ^~~~~~~
In file included from run_sp.cpp:2:
In file included from ./run_sp.h:13:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:23:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/detail/_task.h:89:13: warning: unused function template 'suspend_callback' [-Wunused-template]
   89 | static void suspend_callback(void* user_callback, suspend_point sp) {
      |             ^~~~~~~~~~~~~~~~
In file included from run_sp.cpp:2:
In file included from ./run_sp.h:13:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:27:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/partitioner.h:47:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/task_group.h:130:15: warning: unused function template 'task_ptr_or_nullptr' [-Wunused-template]
  130 |     d1::task* task_ptr_or_nullptr(F&& f){
      |               ^~~~~~~~~~~~~~~~~~~
In file included from run_sp_categorical.cpp:4:
In file included from ./run_sp.h:13:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:23:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/detail/_task.h:89:13: warning: unused function template 'suspend_callback' [-Wunused-template]
   89 | static void suspend_callback(void* user_callback, suspend_point sp) {
      |             ^~~~~~~~~~~~~~~~
In file included from run_sp_categorical.cpp:4:
In file included from ./run_sp.h:13:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:27:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/partitioner.h:47:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/task_group.h:130:15: warning: unused function template 'task_ptr_or_nullptr' [-Wunused-template]
  130 |     d1::task* task_ptr_or_nullptr(F&& f){
      |               ^~~~~~~~~~~~~~~~~~~
2 warnings generated.
3 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c sc-as-network.cpp -o sc-as-network.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c sf-as-network.cpp -o sf-as-network.o
In file included from sf-as-network.cpp:1:
In file included from ./sf-as-network.h:6:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:23:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/detail/_task.h:89:13: warning: unused function template 'suspend_callback' [-Wunused-template]
   89 | static void suspend_callback(void* user_callback, suspend_point sp) {
      |             ^~~~~~~~~~~~~~~~
In file included from sf-as-network.cpp:1:
In file included from ./sf-as-network.h:6:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:27:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/partitioner.h:47:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/task_group.h:130:15: warning: unused function template 'task_ptr_or_nullptr' [-Wunused-template]
  130 |     d1::task* task_ptr_or_nullptr(F&& f){
      |               ^~~~~~~~~~~~~~~~~~~
2 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I. -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c turn_penalty.cpp -o turn_penalty.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang23/lib -L/usr/local/clang23/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o dodgr.so heaps/bheap.o heaps/fheap.o heaps/heap23.o heaps/triheap_ext.o heaps/triheap.o centrality.o concaveman.o deduplicate.o dgraph.o pathfinders.o dodgr-to-sf.o flows.o fund-cycles.o graph-contract.o graph.o graph-sample.o match-points.o RcppExports.o run_sp.o run_sp_categorical.o sc-as-network.o sf-as-network.o turn_penalty.o -L/data/localhost/ripley/R/R-clang/lib -lRlapack -L/data/localhost/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/dodgr/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/dodgr/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/dodgr/src'
installing to /data/localhost/ripley/R/packages/tests-clang/dodgr.Rcheck/00LOCK-dodgr/00new/dodgr/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dodgr)