- using R Under development (unstable) (2026-05-06 r90009)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 22.1.4 (https://github.com/llvm/llvm-project 35990504507d79e0b9deb809c8ee5e1b34ceef20)
flang version 22.1.4 (https://github.com/llvm/llvm-project 35990504507d79e0b9deb809c8ee5e1b34ceef20)
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
* current time: 2026-05-07 03:11:54 UTC
- using option ‘--no-stop-on-test-error’
- checking for file ‘divvy/DESCRIPTION’ ... OK
- this is package ‘divvy’ version ‘1.0.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘divvy’ can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... INFO
Undeclared package ‘palaeoverse’ in Rd xrefs
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [13s/15s] ERROR
Running examples in ‘divvy-Ex.R’ failed
The error most likely occurred in:
> ### Name: bandit
> ### Title: Rarefy localities within latitudinal bands
> ### Aliases: bandit
>
> ### ** Examples
>
> # load bivalve occurrences to rasterise
> library(terra)
terra 1.9.25
> data(bivalves)
>
> # initialise Equal Earth projected coordinates
> rWorld <- rast()
> prj <- 'EPSG:8857'
> rPrj <- project(rWorld, prj, res = 200000) # 200,000m is approximately 2 degrees
Error: [write] unknown option(s): xscale,yscale
Execution halted
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [102s/107s] ERROR
Running ‘testthat.R’ [101s/106s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(divvy)
>
> test_check("divvy")
Saving _problems/test_calc_eco_variables-32.R
Saving _problems/test_subsample-50.R
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 28 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_calc_eco_variables.R:32:1'): (code run outside of `test_that()`) ──
Error: [write] unknown option(s): xscale,yscale
Backtrace:
▆
1. ├─terra::project(rWorld, prj, res = 2e+05) at test_calc_eco_variables.R:32:1
2. └─terra::project(rWorld, prj, res = 2e+05)
3. └─terra (local) .local(x, ...)
4. ├─terra::project(...)
5. └─terra::project(...)
6. └─terra (local) .local(x, ...)
7. └─terra:::spatOptions(filename, threads = threads, ...)
8. └─terra:::.setOptions(opt, wopt)
9. └─terra:::error("write", "unknown option(s): ", bad)
── Error ('test_subsample.R:50:1'): (code run outside of `test_that()`) ────────
Error: [write] unknown option(s): xscale,yscale
Backtrace:
▆
1. ├─terra::project(rWorld, prj, res = 2e+05) at test_subsample.R:50:1
2. └─terra::project(rWorld, prj, res = 2e+05)
3. └─terra (local) .local(x, ...)
4. ├─terra::project(...)
5. └─terra::project(...)
6. └─terra (local) .local(x, ...)
7. └─terra:::spatOptions(filename, threads = threads, ...)
8. └─terra:::.setOptions(opt, wopt)
9. └─terra:::error("write", "unknown option(s): ", bad)
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 28 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [25s/26s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘habitat-rangesize-case-study.Rmd’ using rmarkdown
--- finished re-building ‘habitat-rangesize-case-study.Rmd’
--- re-building ‘subsampling-vignette.Rmd’ using rmarkdown
Quitting from subsampling-vignette.Rmd:84-100 [rasterise]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! [write] unknown option(s): xscale,yscale
---
Backtrace:
▆
1. ├─terra::project(rWorld, prj, res = 2e+05)
2. └─terra::project(rWorld, prj, res = 2e+05)
3. └─terra (local) .local(x, ...)
4. ├─terra::project(...)
5. └─terra::project(...)
6. └─terra (local) .local(x, ...)
7. └─terra:::spatOptions(filename, threads = threads, ...)
8. └─terra:::.setOptions(opt, wopt)
9. └─terra:::error("write", "unknown option(s): ", bad)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'subsampling-vignette.Rmd' failed with diagnostics:
[write] unknown option(s): xscale,yscale
--- failed re-building ‘subsampling-vignette.Rmd’
SUMMARY: processing the following file failed:
‘subsampling-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 3 ERRORs