* installing *source* package ‘divest’ ...
** this is package ‘divest’ version ‘1.2.0’
** package ‘divest’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether /usr/local/clang21/bin/clang++ -std=gnu++17 accepts -g... yes
checking for /usr/local/clang21/bin/clang++ -std=gnu++17 option to enable C++11 features... none needed
checking for pkg-config... /usr/bin/pkg-config
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for fmemopen... yes
configure: Using OpenJPEG for JPEG2000 support
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘clang version 21.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/divest/src'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -DmyDisableMiniZ -I/usr/include/openjpeg-2.5 -DHAVE_FMEMOPEN -I. -Idcm2niix -Iujpeg -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RNifti/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c main.cpp -o main.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -DmyDisableMiniZ -I/usr/include/openjpeg-2.5 -DHAVE_FMEMOPEN -I. -Idcm2niix -Iujpeg -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RNifti/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c dcm2niix/jpg_0XC3.cpp -o dcm2niix/jpg_0XC3.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -DmyDisableMiniZ -I/usr/include/openjpeg-2.5 -DHAVE_FMEMOPEN -I. -Idcm2niix -Iujpeg -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RNifti/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c dcm2niix/nifti1_io_core.cpp -o dcm2niix/nifti1_io_core.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -DmyDisableMiniZ -I/usr/include/openjpeg-2.5 -DHAVE_FMEMOPEN -I. -Idcm2niix -Iujpeg -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RNifti/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c dcm2niix/nii_dicom.cpp -o dcm2niix/nii_dicom.o
dcm2niix/nii_dicom.cpp:1922:6: warning: variable 'patientPositionNumPhilips' set but not used [-Wunused-but-set-variable]
 1922 |         int patientPositionNumPhilips = 0;
      |             ^
dcm2niix/nii_dicom.cpp:4876:12: warning: unused variable 'realGroupElement' [-Wunused-variable]
 4876 |                 uint32_t realGroupElement = groupElement;
      |                          ^~~~~~~~~~~~~~~~
2 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -DmyDisableMiniZ -I/usr/include/openjpeg-2.5 -DHAVE_FMEMOPEN -I. -Idcm2niix -Iujpeg -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RNifti/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c dcm2niix/nii_dicom_batch.cpp -o dcm2niix/nii_dicom_batch.o
dcm2niix/nii_dicom_batch.cpp:2727:7: warning: variable 'isIsotropic' set but not used [-Wunused-but-set-variable]
 2727 |         bool isIsotropic = false;
      |              ^
dcm2niix/nii_dicom_batch.cpp:3485:13: warning: unused variable 'kTempPathSeparator' [-Wunused-variable]
 3485 |         const char kTempPathSeparator = '\a';
      |                    ^~~~~~~~~~~~~~~~~~
dcm2niix/nii_dicom_batch.cpp:3486:7: warning: unused variable 'hasCaret' [-Wunused-variable]
 3486 |         bool hasCaret = false;
      |              ^~~~~~~~
dcm2niix/nii_dicom_batch.cpp:6833:9: warning: unused variable 'pf' [-Wunused-variable]
 6833 |                 float pf = 1.0f; // partial fourier
      |                       ^~
dcm2niix/nii_dicom_batch.cpp:7118:7: warning: variable 'isDirLabel' set but not used [-Wunused-but-set-variable]
 7118 |         bool isDirLabel = false;           // report phase encoding direction
      |              ^
dcm2niix/nii_dicom_batch.cpp:7296:6: warning: variable 'nVol' set but not used [-Wunused-but-set-variable]
 7296 |         int nVol = 1;
      |             ^
dcm2niix/nii_dicom_batch.cpp:8267:11: warning: variable 'slicePositionRepeats' set but not used [-Wunused-but-set-variable]
 8267 |                                                 int slicePositionRepeats = 1; // how many times is first position repeated
      |                                                     ^
dcm2niix/nii_dicom_batch.cpp:8566:10: warning: unused variable 'shearMat' [-Wunused-variable]
 8566 |                         mat33 shearMat;
      |                               ^~~~~~~~
8 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -DmyDisableMiniZ -I/usr/include/openjpeg-2.5 -DHAVE_FMEMOPEN -I. -Idcm2niix -Iujpeg -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RNifti/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c dcm2niix/nii_ortho.cpp -o dcm2niix/nii_ortho.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -DmyDisableMiniZ -I/usr/include/openjpeg-2.5 -DHAVE_FMEMOPEN -I. -Idcm2niix -Iujpeg -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RNifti/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c ujpeg/ujpeg.cpp -o ujpeg/ujpeg.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o divest.so main.o dcm2niix/jpg_0XC3.o dcm2niix/nifti1_io_core.o dcm2niix/nii_dicom.o dcm2niix/nii_dicom_batch.o dcm2niix/nii_ortho.o ujpeg/ujpeg.o -lopenjp2
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/divest/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/divest/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/divest/src'
installing to /data/gannet/ripley/R/packages/tests-clang/divest.Rcheck/00LOCK-divest/00new/divest/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (divest)