Install log for 'disaggregation'

* installing *source* package ‘disaggregation’ ...
** this is package ‘disaggregation’ version ‘0.4.1’
** package ‘disaggregation’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 23.1.0’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/disaggregation/src'
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/TMB/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c disaggregation.cpp -o disaggregation.o
In file included from disaggregation.cpp:9:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from disaggregation.cpp:9:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from disaggregation.cpp:9:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/TMB.hpp:92:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:32:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template]
  240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
      |              ^~~~~~~~~~~~~~~~~~~~~
In file included from disaggregation.cpp:9:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:55:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template]
  270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from disaggregation.cpp:9:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:56:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template]
   20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from disaggregation.cpp:9:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:67:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template]
  501 | static IndexType init_rows_cols  /* returns true if OK, or false otherwise */
      |                  ^~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template]
  717 | static void init_scoring
      |             ^~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template]
  954 | static IndexType find_ordering /* return the number of garbage collections */
      |                  ^~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template]
 1566 | static void detect_super_cols
      |             ^~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template]
 1717 | static IndexType garbage_collection  /* returns the new value of pfree */
      |                  ^~~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template]
  342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats])
      |             ^~~~~~~~~~~~~~~~
In file included from disaggregation.cpp:9:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/TMB.hpp:226:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/atomic.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/pbeta.hpp:99:
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:720:14: warning: unused function template 'bfrac' [-Wunused-template]
  720 | static Float bfrac(Float a, Float b, Float x, Float y, Float lambda,
      |              ^~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:1083:35: warning: unused function template 'bgrat' [-Wunused-template]
 1083 | template<class Float> static void bgrat(Float a, Float b, Float x, Float y, Float *w,
      |                                   ^~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:1195:36: warning: unused function template 'grat_r' [-Wunused-template]
 1195 | template<class Float> static Float grat_r(Float a, Float x, Float log_r, Float eps)
      |                                    ^~~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:478:36: warning: unused function template 'apser' [-Wunused-template]
  478 | template<class Float> static Float apser(Float a, Float b, Float x, Float eps)
      |                                    ^~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:510:36: warning: unused function template 'bpser' [-Wunused-template]
  510 | template<class Float> static Float bpser(Float a, Float b, Float x, Float eps, int log_p)
      |                                    ^~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:1288:36: warning: unused function template 'basym' [-Wunused-template]
 1288 | template<class Float> static Float basym(Float a, Float b, Float lambda, Float eps, int log_p)
      |                                    ^~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:428:29: warning: unused function template 'fpser' [-Wunused-template]
  428 | template<class Float> Float fpser(Float a, Float b, Float x, Float eps, int log_p)
      |                             ^~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:641:36: warning: unused function template 'bup' [-Wunused-template]
  641 | template<class Float> static Float bup(Float a, Float b, Float x, Float y, int n, Float eps,
      |                                    ^~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:1791:36: warning: unused function template 'psi' [-Wunused-template]
 1791 | template<class Float> static Float psi(Float x)
      |                                    ^~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:1692:36: warning: unused function template 'gam1' [-Wunused-template]
 1692 | template<class Float> static Float gam1(Float a)
      |                                    ^~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:1747:36: warning: unused function template 'gamln1' [-Wunused-template]
 1747 | template<class Float> static Float gamln1(Float a)
      |                                    ^~~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:1987:36: warning: unused function template 'betaln' [-Wunused-template]
 1987 | template<class Float> static Float betaln(Float a0, Float b0)
      |                                    ^~~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:2160:36: warning: unused function template 'algdiv' [-Wunused-template]
 2160 | template<class Float> static Float algdiv(Float a, Float b)
      |                                    ^~~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:936:36: warning: unused function template 'brcmp1' [-Wunused-template]
  936 | template<class Float> static Float brcmp1(int mu, Float a, Float b, Float x, Float y, int give_log)
      |                                    ^~~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:799:36: warning: unused function template 'brcomp' [-Wunused-template]
  799 | template<class Float> static Float brcomp(Float a, Float b, Float x, Float y, int log_p)
      |                                    ^~~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:1496:36: warning: unused function template 'rlog1' [-Wunused-template]
 1496 | template<class Float> static Float rlog1(Float x)
      |                                    ^~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:2101:36: warning: unused function template 'bcorr' [-Wunused-template]
 2101 | template<class Float> static Float bcorr(Float a0, Float b0)
      |                                    ^~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:2224:36: warning: unused function template 'gamln' [-Wunused-template]
 2224 | template<class Float> static Float gamln(Float a)
      |                                    ^~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:1471:36: warning: unused function template 'alnrel' [-Wunused-template]
 1471 | template<class Float> static Float alnrel(Float a)
      |                                    ^~~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:1419:36: warning: unused function template 'esum' [-Wunused-template]
 1419 | template<class Float> static Float esum(int mu, Float x, int give_log)
      |                                    ^~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:1539:36: warning: unused function template 'erf__' [-Wunused-template]
 1539 | template<class Float> static Float erf__(Float x)
      |                                    ^~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:1444:29: warning: unused function template 'rexpm1' [-Wunused-template]
 1444 | template<class Float> Float rexpm1(Float x)
      |                             ^~~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:1602:36: warning: unused function template 'erfc1' [-Wunused-template]
 1602 | template<class Float> static Float erfc1(int ind, Float x)
      |                                    ^~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/beta/toms708.cpp:2081:36: warning: unused function template 'gsumln' [-Wunused-template]
 2081 | template<class Float> static Float gsumln(Float a, Float b)
      |                                    ^~~~~~
In file included from disaggregation.cpp:9:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/TMB.hpp:226:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/atomic.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/bessel/bessel.hpp:64:
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/bessel/bessel_k.cpp:122:13: warning: unused function template 'K_bessel' [-Wunused-template]
  122 | static void K_bessel(Float *x, Float *alpha, int *nb,
      |             ^~~~~~~~
In file included from disaggregation.cpp:9:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/TMB.hpp:226:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/atomic.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/bessel/bessel.hpp:73:
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/bessel/bessel_j.cpp:141:13: warning: unused function template 'J_bessel' [-Wunused-template]
  141 | static void J_bessel(Float *x, Float *alpha, int *nb,
      |             ^~~~~~~~
In file included from disaggregation.cpp:9:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/TMB.hpp:226:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/atomic.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/bessel/bessel.hpp:74:
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/bessel/bessel_y.cpp:150:13: warning: unused function template 'Y_bessel' [-Wunused-template]
  150 | static void Y_bessel(Float *x, Float *alpha, int *nb,
      |             ^~~~~~~~
In file included from disaggregation.cpp:9:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/TMB.hpp:226:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/atomic.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/bessel/bessel.hpp:100:
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/bessel/bessel_i.cpp:136:13: warning: unused function template 'I_bessel' [-Wunused-template]
  136 | static void I_bessel(Float *x, Float *alpha, int *nb,
      |             ^~~~~~~~
In file included from disaggregation.cpp:9:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/TMB.hpp:227:
In file included from /data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/integrate/integrate.hpp:40:
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/integrate/integrate.cpp:248:6: warning: unused function template 'rdqagie' [-Wunused-template]
  248 | void rdqagie(integr_fn f, void *ex, Float *bound, int *inf, Float *
      |      ^~~~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/integrate/integrate.cpp:1482:52: warning: unused function template 'rdqk15i' [-Wunused-template]
 1482 | template<class Float, class integr_fn> static void rdqk15i(integr_fn f, void *ex,
      |                                                    ^~~~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/integrate/integrate.cpp:976:6: warning: unused function template 'rdqagse' [-Wunused-template]
  976 | void rdqagse(integr_fn f, void *ex, Float *a, Float *b, Float *
      |      ^~~~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/integrate/integrate.cpp:1913:53: warning: unused function template 'rdqk21' [-Wunused-template]
 1913 | template<class Float, class integr_fn> static void  rdqk21(integr_fn f, void *ex, Float *a, Float *b, Float *result,
      |                                                     ^~~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/integrate/integrate.cpp:2122:35: warning: unused function template 'rdqpsrt' [-Wunused-template]
 2122 | template<class Float> static void rdqpsrt(int *limit, int *last, int *maxerr,
      |                                   ^~~~~~~
/data/localhost/ripley/R/test-clang/TMB/include/tiny_ad/integrate/integrate.cpp:1712:35: warning: unused function template 'rdqelg' [-Wunused-template]
 1712 | template<class Float> static void rdqelg(int *n, Float *epstab, Float *
      |                                   ^~~~~~
46 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang23/lib -L/usr/local/clang23/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o disaggregation.so disaggregation.o
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/disaggregation/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/disaggregation/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/disaggregation/src'
installing to /data/localhost/ripley/R/packages/tests-clang/disaggregation.Rcheck/00LOCK-disaggregation/00new/disaggregation/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (disaggregation)