- using R Under development (unstable) (2026-07-10 r90234)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 22.1.8 (https://github.com/llvm/llvm-project ca7933e47d3a3451d81e72ac174dcb5aa28b59d1)
flang version 22.1.8 (https://github.com/llvm/llvm-project ca7933e47d3a3451d81e72ac174dcb5aa28b59d1)
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
* current time: 2026-07-11 05:58:33 UTC
- using option ‘--no-stop-on-test-error’
- checking for file ‘diffobj/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘diffobj’ version ‘0.3.6’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘diffobj’ can be installed ... [29s/73s] OK
See the install log for details.
- used C compiler: ‘clang version 22.1.8 (https://github.com/llvm/llvm-project ca7933e47d3a3451d81e72ac174dcb5aa28b59d1)’
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking whether startup messages can be suppressed ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [31s/42s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [4s/11s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [75s/117s] ERROR
Running ‘test-atomic.R’ [6s/11s]
Comparing ‘test-atomic.Rout’ to ‘test-atomic.Rout.save’ ... OK
Running ‘test-banner.R’
Comparing ‘test-banner.Rout’ to ‘test-banner.Rout.save’ ... OK
Running ‘test-capture.R’
Comparing ‘test-capture.Rout’ to ‘test-capture.Rout.save’ ... OK
Running ‘test-check.R’
Comparing ‘test-check.Rout’ to ‘test-check.Rout.save’ ... OK
Running ‘test-context.R’
Comparing ‘test-context.Rout’ to ‘test-context.Rout.save’ ... OK
Running ‘test-core.R’
Comparing ‘test-core.Rout’ to ‘test-core.Rout.save’ ...
157,159d156
< Warning message:
< In structure(c(3L, 1L, 3L, 1L, 2L, 1L, 2L), .Label = c("Match", :
< Replacing special names '.Label' is deprecated; use 'levels' instead.
171,175d167
< Warning messages:
< 1: In structure(c(3L, 1L, 3L, 1L, 2L, 1L, 2L), .Label = c("Match", :
< Replacing special names '.Label' is deprecated; use 'levels' instead.
< 2: In structure(list(type = structure(c(3L, 1L, 3L, 1L, 2L, 1L, 2L), :
< Replacing special names '.Names' is deprecated; use 'names' instead.
Running ‘test-diffChr.R’
Comparing ‘test-diffChr.Rout’ to ‘test-diffChr.Rout.save’ ...
230,232d229
< Warning message:
< In structure(c("0x0000, 0x001F", "0x008F, 0x009F", "0x0300, 0x036F"), :
< Replacing special names '.Dim' is deprecated; use 'dim' instead.
Running ‘test-diffDeparse.R’
Comparing ‘test-diffDeparse.Rout’ to ‘test-diffDeparse.Rout.save’ ... OK
Running ‘test-diffObj.R’
Comparing ‘test-diffObj.Rout’ to ‘test-diffObj.Rout.save’ ... OK
Running ‘test-diffPrint.R’ [9s/16s]
Comparing ‘test-diffPrint.Rout’ to ‘test-diffPrint.Rout.save’ ...
187,189d186
< Warning message:
< In structure(c(-1717, 101, 0.938678984853783), .Names = c("intercept", :
< Replacing special names '.Names' is deprecated; use 'names' instead.
194,196d190
< Warning message:
< In structure(c(-3.541306e+13, 701248600000, 0.938679), .Names = c("intercept", :
< Replacing special names '.Names' is deprecated; use 'names' instead.
Running ‘test-diffStr.R’
Comparing ‘test-diffStr.Rout’ to ‘test-diffStr.Rout.save’ ... OK
Running ‘test-file.R’
Comparing ‘test-file.Rout’ to ‘test-file.Rout.save’ ... OK
Running ‘test-guide.R’
Comparing ‘test-guide.Rout’ to ‘test-guide.Rout.save’ ... OK
Running ‘test-html.R’
Comparing ‘test-html.Rout’ to ‘test-html.Rout.save’ ... OK
Running ‘test-limit.R’
Comparing ‘test-limit.Rout’ to ‘test-limit.Rout.save’ ... OK
Running ‘test-methods.R’
Comparing ‘test-methods.Rout’ to ‘test-methods.Rout.save’ ... OK
Running ‘test-misc.R’
Comparing ‘test-misc.Rout’ to ‘test-misc.Rout.save’ ... OK
Running ‘test-pager.R’
Comparing ‘test-pager.Rout’ to ‘test-pager.Rout.save’ ... OK
Running ‘test-rdiff.R’
Comparing ‘test-rdiff.Rout’ to ‘test-rdiff.Rout.save’ ... OK
Running ‘test-s4.R’
Comparing ‘test-s4.Rout’ to ‘test-s4.Rout.save’ ... OK
Running ‘test-scaling.R’
Running ‘test-ses.R’
Comparing ‘test-ses.Rout’ to ‘test-ses.Rout.save’ ... OK
Running ‘test-style.R’
Comparing ‘test-style.Rout’ to ‘test-style.Rout.save’ ... OK
Running ‘test-subset.R’
Comparing ‘test-subset.Rout’ to ‘test-subset.Rout.save’ ... OK
Running ‘test-summary.R’
Comparing ‘test-summary.Rout’ to ‘test-summary.Rout.save’ ... OK
Running ‘test-text.R’
Comparing ‘test-text.Rout’ to ‘test-text.Rout.save’ ... OK
Running ‘test-trim.R’
Comparing ‘test-trim.Rout’ to ‘test-trim.Rout.save’ ... OK
Running ‘test-warnings.R’
Comparing ‘test-warnings.Rout’ to ‘test-warnings.Rout.save’ ... OK
Running ‘zz-test-check.R’
Running the tests in ‘tests/zz-test-check.R’ failed.
Complete output:
> source('_helper/check.R')
Error: Test output differences:
'test-core.Rout', 'test-diffChr.Rout', 'test-diffPrint.Rout'
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [11s/16s] OK
- checking PDF version of manual ... [13s/21s] OK
- checking HTML version of manual ... [13s/19s] OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR