Install log for 'defm'

* installing *source* package ‘defm’ ...
** this is package ‘defm’ version ‘0.2.1.0’
** package ‘defm’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether clang++-22 -stdlib=libc++ -std=gnu++20 accepts -g... yes
checking for clang++-22 -stdlib=libc++ -std=gnu++20 option to enable C++11 features... none needed
checking how to run the C++ preprocessor... clang++-22 -stdlib=libc++ -std=gnu++20 -E
checking whether the compiler supports GNU C++... (cached) yes
checking whether clang++-22 -stdlib=libc++ -std=gnu++20 accepts -g... (cached) yes
checking for clang++-22 -stdlib=libc++ -std=gnu++20 option to enable C++11 features... (cached) none needed
checking whether we have a suitable tempdir... /tmp/RtmpCv50oQ/working_dir
checking whether R CMD SHLIB can already compile programs using OpenMP... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘clang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/defm/src'
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/barry/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -fopenmp -I../inst/include/  -Dprintf_barry=Rprintf -DBARRY_USER_INTERRUPT="Rcpp::checkUserInterrupt();" -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RcppExports.cpp -o RcppExports.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/barry/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -fopenmp -I../inst/include/  -Dprintf_barry=Rprintf -DBARRY_USER_INTERRUPT="Rcpp::checkUserInterrupt();" -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c counters.cpp -o counters.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/barry/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -fopenmp -I../inst/include/  -Dprintf_barry=Rprintf -DBARRY_USER_INTERRUPT="Rcpp::checkUserInterrupt();" -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c defm-object.cpp -o defm-object.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/barry/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -fopenmp -I../inst/include/  -Dprintf_barry=Rprintf -DBARRY_USER_INTERRUPT="Rcpp::checkUserInterrupt();" -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c terms.cpp -o terms.o
In file included from defm-object.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/barry/include/barry/barry.hpp:83:
/data/gannet/ripley/R/test-clang/barry/include/barry/model-meat.hpp:1079:88: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
 1079 | inline double Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::likelihood_total(
      |                                                                                        ^
/data/gannet/ripley/R/test-clang/barry/include/barry/model-meat.hpp:1079:88: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
/data/gannet/ripley/R/test-clang/barry/include/barry/model-meat.hpp:941:88: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
  941 | inline double Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::likelihood(
      |                                                                                        ^
6 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/22/lib/x86_64-unknown-linux-gnu -o defm.so RcppExports.o counters.o defm-object.o terms.o -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/defm/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/defm/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/defm/src'
installing to /data/gannet/ripley/R/packages/tests-clang/defm.Rcheck/00LOCK-defm/00new/defm/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (defm)