* installing *source* package ‘deSolve’ ...
** this is package ‘deSolve’ version ‘1.40’
** package ‘deSolve’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 21.1.1’
using Fortran compiler: ‘flang version 21.1.1’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/deSolve/src'
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c DLLutil.c -o DLLutil.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c R_init_deSolve.c -o R_init_deSolve.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c brent.c -o brent.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_daspk.c -o call_daspk.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_euler.c -o call_euler.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_iteration.c -o call_iteration.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_lsoda.c -o call_lsoda.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_radau.c -o call_radau.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_rk4.c -o call_rk4.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_rkAuto.c -o call_rkAuto.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_rkFixed.c -o call_rkFixed.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_rkImplicit.c -o call_rkImplicit.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_zvode.c -o call_zvode.o
/usr/local/clang21/bin/flang -fpic -O2 -pedantic -c daux.f -o daux.o
/usr/local/clang21/bin/flang -fpic -O2 -pedantic -c ddaspk.f -o ddaspk.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c deSolve_utils.c -o deSolve_utils.o
/usr/local/clang21/bin/flang -fpic -O2 -pedantic -c dintdy2.f -o dintdy2.o
/usr/local/clang21/bin/flang -fpic -O2 -pedantic -c dlinpk.f -o dlinpk.o
/usr/local/clang21/bin/flang -fpic -O2 -pedantic -c dlsoder.f -o dlsoder.o
/usr/local/clang21/bin/flang -fpic -O2 -pedantic -c dsparsk.f -o dsparsk.o
/usr/local/clang21/bin/flang -fpic -O2 -pedantic -c dvode.f -o dvode.o
/usr/local/clang21/bin/flang -fpic -O2 -pedantic -c errmsg.f -o errmsg.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c ex_Aquaphy.c -o ex_Aquaphy.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c ex_CCL4model.c -o ex_CCL4model.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c ex_ChemicalDAE.c -o ex_ChemicalDAE.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c ex_SCOC.c -o ex_SCOC.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c forcings.c -o forcings.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c lags.c -o lags.o
/usr/local/clang21/bin/flang -fpic -O2 -pedantic -c opkda1.f -o opkda1.o
./opkda1.f:887:7: warning: Unrecognized compiler directive was ignored [-Wignored-directive]
Cdir$ ivdep
^^^^^^
./opkda1.f:986:7: warning: Unrecognized compiler directive was ignored [-Wignored-directive]
Cdir$ ivdep
^^^^^^
./opkda1.f:1048:7: warning: Unrecognized compiler directive was ignored [-Wignored-directive]
Cdir$ ivdep
^^^^^^
./opkda1.f:4183:7: warning: Unrecognized compiler directive was ignored [-Wignored-directive]
CDIR$ IVDEP
^^^^^^
./opkda1.f:4304:7: warning: Unrecognized compiler directive was ignored [-Wignored-directive]
CDIR$ IVDEP
^^^^^^
./opkda1.f:4472:7: warning: Unrecognized compiler directive was ignored [-Wignored-directive]
CDIR$ IVDEP
^^^^^^
./opkda1.f:5540:7: warning: Unrecognized compiler directive was ignored [-Wignored-directive]
CDIR$ IVDEP
^^^^^^
./opkda1.f:5641:7: warning: Unrecognized compiler directive was ignored [-Wignored-directive]
CDIR$ IVDEP
^^^^^^
./opkda1.f:5703:7: warning: Unrecognized compiler directive was ignored [-Wignored-directive]
CDIR$ IVDEP
^^^^^^
/usr/local/clang21/bin/flang -fpic -O2 -pedantic -c opkdmain.f -o opkdmain.o
/usr/local/clang21/bin/flang -fpic -O2 -pedantic -c radau5.f -o radau5.o
/usr/local/clang21/bin/flang -fpic -O2 -pedantic -c radau5a.f -o radau5a.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rk_auto.c -o rk_auto.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rk_fixed.c -o rk_fixed.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rk_implicit.c -o rk_implicit.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rk_util.c -o rk_util.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rprintf.c -o rprintf.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c twoDmap.c -o twoDmap.o
/usr/local/clang21/bin/flang -fpic -O2 -pedantic -c zvode.f -o zvode.o
/usr/local/clang21/bin/clang -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o deSolve.so DLLutil.o R_init_deSolve.o brent.o call_daspk.o call_euler.o call_iteration.o call_lsoda.o call_radau.o call_rk4.o call_rkAuto.o call_rkFixed.o call_rkImplicit.o call_zvode.o daux.o ddaspk.o deSolve_utils.o dintdy2.o dlinpk.o dlsoder.o dsparsk.o dvode.o errmsg.o ex_Aquaphy.o ex_CCL4model.o ex_ChemicalDAE.o ex_SCOC.o forcings.o lags.o opkda1.o opkdmain.o radau5.o radau5a.o rk_auto.o rk_fixed.o rk_implicit.o rk_util.o rprintf.o twoDmap.o zvode.o -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/deSolve/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/deSolve/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/deSolve/src'
installing to /data/gannet/ripley/R/packages/tests-clang/deSolve.Rcheck/00LOCK-deSolve/00new/deSolve/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘matplot’ in package ‘deSolve’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (deSolve)