* installing *source* package ‘deSolve’ ...
** this is package ‘deSolve’ version ‘1.41’
** package ‘deSolve’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)’
using Fortran compiler: ‘flang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/deSolve/src'
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c DLLutil.c -o DLLutil.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c R_init_deSolve.c -o R_init_deSolve.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c brent.c -o brent.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_daspk.c -o call_daspk.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_euler.c -o call_euler.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_iteration.c -o call_iteration.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_lsoda.c -o call_lsoda.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_radau.c -o call_radau.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_rk4.c -o call_rk4.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_rkAuto.c -o call_rkAuto.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_rkFixed.c -o call_rkFixed.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_rkImplicit.c -o call_rkImplicit.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c call_zvode.c -o call_zvode.o
flang-22 -fpic -O2 -pedantic -c daux.f -o daux.o
flang-22 -fpic -O2 -pedantic -c ddaspk.f -o ddaspk.o
./ddaspk.f:2567:12: warning: Value of uninitialized local variable 'rhcut' is used but never defined [-Wused-undefined-variable]
SAVE RHCUT, RATEMX
^^^^^
./ddaspk.f:3237:12: warning: Value of uninitialized local variable 'fac' is used but never defined [-Wused-undefined-variable]
SAVE FAC, FAC2, ZERO
^^^
./ddaspk.f:3237:17: warning: Value of uninitialized local variable 'fac2' is used but never defined [-Wused-undefined-variable]
SAVE FAC, FAC2, ZERO
^^^^
./ddaspk.f:3237:23: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
SAVE FAC, FAC2, ZERO
^^^^
./ddaspk.f:3344:12: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
SAVE ZERO
^^^^
./ddaspk.f:3953:12: warning: Value of uninitialized local variable 'alpha' is used but never defined [-Wused-undefined-variable]
SAVE ALPHA, ONE, TWO
^^^^^
./ddaspk.f:3953:19: warning: Value of uninitialized local variable 'one' is used but never defined [-Wused-undefined-variable]
SAVE ALPHA, ONE, TWO
^^^
./ddaspk.f:3953:24: warning: Value of uninitialized local variable 'two' is used but never defined [-Wused-undefined-variable]
SAVE ALPHA, ONE, TWO
^^^
./ddaspk.f:4259:27: warning: Value of uninitialized local variable 'xrate' is used but never defined [-Wused-undefined-variable]
SAVE MULDEL, MAXIT, XRATE
^^^^^
./ddaspk.f:5279:12: warning: Value of uninitialized local variable 'alpha' is used but never defined [-Wused-undefined-variable]
SAVE ALPHA, ONE, TWO
^^^^^
./ddaspk.f:5279:19: warning: Value of uninitialized local variable 'one' is used but never defined [-Wused-undefined-variable]
SAVE ALPHA, ONE, TWO
^^^
./ddaspk.f:5279:24: warning: Value of uninitialized local variable 'two' is used but never defined [-Wused-undefined-variable]
SAVE ALPHA, ONE, TWO
^^^
./ddaspk.f:5596:27: warning: Value of uninitialized local variable 'xrate' is used but never defined [-Wused-undefined-variable]
SAVE MULDEL, MAXIT, XRATE
^^^^^
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c deSolve_utils.c -o deSolve_utils.o
flang-22 -fpic -O2 -pedantic -c dintdy2.f -o dintdy2.o
flang-22 -fpic -O2 -pedantic -c dlinpk.f -o dlinpk.o
flang-22 -fpic -O2 -pedantic -c dlsoder.f -o dlsoder.o
./dlsoder.f:64:35: warning: Value of uninitialized local variable 'mord' is used but never defined [-Wused-undefined-variable]
1 LENIW, LENRW, LENWM, ML, MORD, MU, MXHNL0, MXSTP0
^^^^
./dlsoder.f:64:45: warning: Value of uninitialized local variable 'mxhnl0' is used but never defined [-Wused-undefined-variable]
1 LENIW, LENRW, LENWM, ML, MORD, MU, MXHNL0, MXSTP0
^^^^^^
./dlsoder.f:64:53: warning: Value of uninitialized local variable 'mxstp0' is used but never defined [-Wused-undefined-variable]
1 LENIW, LENRW, LENWM, ML, MORD, MU, MXHNL0, MXSTP0
^^^^^^
./dlsoder.f:797:18: warning: Value of uninitialized local variable 'lenrat' is used but never defined [-Wused-undefined-variable]
1 J, KGO, LENRAT, LENYHT, LENIW, LENRW, LF0, LIA, LJA,
^^^^^^
./dlsoder.f:798:41: warning: Value of uninitialized local variable 'mord' is used but never defined [-Wused-undefined-variable]
2 LRTEM, LWTEM, LYHD, LYHN, MF1, MORD, MXHNL0, MXSTP0, NCOLM
^^^^
./dlsoder.f:798:47: warning: Value of uninitialized local variable 'mxhnl0' is used but never defined [-Wused-undefined-variable]
2 LRTEM, LWTEM, LYHD, LYHN, MF1, MORD, MXHNL0, MXSTP0, NCOLM
^^^^^^
./dlsoder.f:798:55: warning: Value of uninitialized local variable 'mxstp0' is used but never defined [-Wused-undefined-variable]
2 LRTEM, LWTEM, LYHD, LYHN, MF1, MORD, MXHNL0, MXSTP0, NCOLM
^^^^^^
flang-22 -fpic -O2 -pedantic -c dsparsk.f -o dsparsk.o
flang-22 -fpic -O2 -pedantic -c dvode.f -o dvode.o
./dvode.f:245:42: warning: Value of uninitialized local variable 'four' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION ATOLI, BIG, EWTI, FOUR, H0, HMAX, HMX, HUN, ONE, &
^^^^
./dvode.f:245:63: warning: Value of uninitialized local variable 'hun' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION ATOLI, BIG, EWTI, FOUR, H0, HMAX, HMX, HUN, ONE, &
^^^
./dvode.f:245:68: warning: Value of uninitialized local variable 'one' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION ATOLI, BIG, EWTI, FOUR, H0, HMAX, HMX, HUN, ONE, &
^^^
./dvode.f:246:10: warning: Value of uninitialized local variable 'pt2' is used but never defined [-Wused-undefined-variable]
& PT2, RH, RTOLI, SIZE, TCRIT, TNEXT, TOLSF, TP, TWO, ZERO
^^^
./dvode.f:246:57: warning: Value of uninitialized local variable 'two' is used but never defined [-Wused-undefined-variable]
& PT2, RH, RTOLI, SIZE, TCRIT, TNEXT, TOLSF, TP, TWO, ZERO
^^^
./dvode.f:246:62: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
& PT2, RH, RTOLI, SIZE, TCRIT, TNEXT, TOLSF, TP, TWO, ZERO
^^^^
./dvode.f:248:38: warning: Value of uninitialized local variable 'mord' is used but never defined [-Wused-undefined-variable]
& LENWM, LF0, MBAND, MFA, ML, MORD, MU, MXHNL0, MXSTP0, NITER, &
^^^^
./dvode.f:248:48: warning: Value of uninitialized local variable 'mxhnl0' is used but never defined [-Wused-undefined-variable]
& LENWM, LF0, MBAND, MFA, ML, MORD, MU, MXHNL0, MXSTP0, NITER, &
^^^^^^
./dvode.f:248:56: warning: Value of uninitialized local variable 'mxstp0' is used but never defined [-Wused-undefined-variable]
& LENWM, LF0, MBAND, MFA, ML, MORD, MU, MXHNL0, MXSTP0, NITER, &
^^^^^^
./dvode.f:891:43: warning: Value of uninitialized local variable 'half' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION AFI, ATOLI, DELYI, HALF, HG, HLB, HNEW, HRAT, &
^^^^
./dvode.f:892:17: warning: Value of uninitialized local variable 'hun' is used but never defined [-Wused-undefined-variable]
& HUB, HUN, PT1, T1, TDIST, TROUND, TWO, YDDNRM,H
^^^
./dvode.f:892:22: warning: Value of uninitialized local variable 'pt1' is used but never defined [-Wused-undefined-variable]
& HUB, HUN, PT1, T1, TDIST, TROUND, TWO, YDDNRM,H
^^^
./dvode.f:892:46: warning: Value of uninitialized local variable 'two' is used but never defined [-Wused-undefined-variable]
& HUB, HUN, PT1, T1, TDIST, TROUND, TWO, YDDNRM,H
^^^
./dvode.f:1038:27: warning: Value of uninitialized local variable 'hun' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION C, HUN, R, S, TFUZZ, TN1, TP, ZERO
^^^
./dvode.f:1038:54: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION C, HUN, R, S, TFUZZ, TN1, TP, ZERO
^^^^
./dvode.f:1195:24: warning: Value of uninitialized local variable 'addon' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION ADDON, BIAS1,BIAS2,BIAS3, CNQUOT, DDN, DSM, DUP, &
^^^^^
./dvode.f:1195:31: warning: Value of uninitialized local variable 'bias1' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION ADDON, BIAS1,BIAS2,BIAS3, CNQUOT, DDN, DSM, DUP, &
^^^^^
./dvode.f:1195:37: warning: Value of uninitialized local variable 'bias2' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION ADDON, BIAS1,BIAS2,BIAS3, CNQUOT, DDN, DSM, DUP, &
^^^^^
./dvode.f:1195:43: warning: Value of uninitialized local variable 'bias3' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION ADDON, BIAS1,BIAS2,BIAS3, CNQUOT, DDN, DSM, DUP, &
^^^^^
./dvode.f:1196:12: warning: Value of uninitialized local variable 'etacf' is used but never defined [-Wused-undefined-variable]
& ETACF, ETAMIN, ETAMX1, ETAMX2, ETAMX3, ETAMXF, &
^^^^^
./dvode.f:1196:19: warning: Value of uninitialized local variable 'etamin' is used but never defined [-Wused-undefined-variable]
& ETACF, ETAMIN, ETAMX1, ETAMX2, ETAMX3, ETAMXF, &
^^^^^^
./dvode.f:1196:27: warning: Value of uninitialized local variable 'etamx1' is used but never defined [-Wused-undefined-variable]
& ETACF, ETAMIN, ETAMX1, ETAMX2, ETAMX3, ETAMXF, &
^^^^^^
./dvode.f:1196:35: warning: Value of uninitialized local variable 'etamx2' is used but never defined [-Wused-undefined-variable]
& ETACF, ETAMIN, ETAMX1, ETAMX2, ETAMX3, ETAMXF, &
^^^^^^
./dvode.f:1196:43: warning: Value of uninitialized local variable 'etamx3' is used but never defined [-Wused-undefined-variable]
& ETACF, ETAMIN, ETAMX1, ETAMX2, ETAMX3, ETAMXF, &
^^^^^^
./dvode.f:1196:51: warning: Value of uninitialized local variable 'etamxf' is used but never defined [-Wused-undefined-variable]
& ETACF, ETAMIN, ETAMX1, ETAMX2, ETAMX3, ETAMXF, &
^^^^^^
./dvode.f:1197:41: warning: Value of uninitialized local variable 'one' is used but never defined [-Wused-undefined-variable]
& ETAQ, ETAQM1, ETAQP1, FLOTL, ONE, ONEPSM, &
^^^
./dvode.f:1197:46: warning: Value of uninitialized local variable 'onepsm' is used but never defined [-Wused-undefined-variable]
& ETAQ, ETAQM1, ETAQP1, FLOTL, ONE, ONEPSM, &
^^^^^^
./dvode.f:1198:15: warning: Value of uninitialized local variable 'thresh' is used but never defined [-Wused-undefined-variable]
& R, THRESH, TOLD, ZERO
^^^^^^
./dvode.f:1198:29: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
& R, THRESH, TOLD, ZERO
^^^^
./dvode.f:1199:40: warning: Value of uninitialized local variable 'kfc' is used but never defined [-Wused-undefined-variable]
INTEGER I, I1, I2, IBACK, J, JB, KFC, KFH, MXNCF, NCF, NFLAG
^^^
./dvode.f:1199:45: warning: Value of uninitialized local variable 'kfh' is used but never defined [-Wused-undefined-variable]
INTEGER I, I1, I2, IBACK, J, JB, KFC, KFH, MXNCF, NCF, NFLAG
^^^
./dvode.f:1199:50: warning: Value of uninitialized local variable 'mxncf' is used but never defined [-Wused-undefined-variable]
INTEGER I, I1, I2, IBACK, J, JB, KFC, KFH, MXNCF, NCF, NFLAG
^^^^^
./dvode.f:1618:46: warning: Value of uninitialized local variable 'cortes' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION AHATN0, ALPH0, CNQM1, CORTES, CSUM, ELP, EM, &
^^^^^^
./dvode.f:1619:45: warning: Value of uninitialized local variable 'one' is used but never defined [-Wused-undefined-variable]
& EM0, FLOTI, FLOTL, FLOTNQ, HSUM, ONE, RXI, RXIS, S, SIX, &
^^^
./dvode.f:1619:64: warning: Value of uninitialized local variable 'six' is used but never defined [-Wused-undefined-variable]
& EM0, FLOTI, FLOTL, FLOTNQ, HSUM, ONE, RXI, RXIS, S, SIX, &
^^^
./dvode.f:1620:36: warning: Value of uninitialized local variable 'two' is used but never defined [-Wused-undefined-variable]
& T1, T2, T3, T4, T5, T6, TWO, XI, ZERO
^^^
./dvode.f:1620:45: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
& T1, T2, T3, T4, T5, T6, TWO, XI, ZERO
^^^^
./dvode.f:1811:44: warning: Value of uninitialized local variable 'one' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION ALPH0, ALPH1, HSUM, ONE, PROD, T1, XI,XIOLD, ZERO
^^^
./dvode.f:1811:69: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION ALPH0, ALPH1, HSUM, ONE, PROD, T1, XI,XIOLD, ZERO
^^^^
./dvode.f:2035:24: warning: Value of uninitialized local variable 'ccmax' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION CCMAX, CRDOWN, CSCALE, DCON, DEL, DELP, ONE, &
^^^^^
./dvode.f:2035:31: warning: Value of uninitialized local variable 'crdown' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION CCMAX, CRDOWN, CSCALE, DCON, DEL, DELP, ONE, &
^^^^^^
./dvode.f:2036:12: warning: Value of uninitialized local variable 'rdiv' is used but never defined [-Wused-undefined-variable]
& RDIV, TWO, ZERO
^^^^
./dvode.f:2036:18: warning: Value of uninitialized local variable 'two' is used but never defined [-Wused-undefined-variable]
& RDIV, TWO, ZERO
^^^
./dvode.f:2036:23: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
& RDIV, TWO, ZERO
^^^^
./dvode.f:2037:35: warning: Value of uninitialized local variable 'maxcor' is used but never defined [-Wused-undefined-variable]
INTEGER I, IERPJ, IERSL, M, MAXCOR, MSBP
^^^^^^
./dvode.f:2037:43: warning: Value of uninitialized local variable 'msbp' is used but never defined [-Wused-undefined-variable]
INTEGER I, IERPJ, IERSL, M, MAXCOR, MSBP
^^^^
./dvode.f:2270:44: warning: Value of uninitialized local variable 'one' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION CON, DI, FAC, HRL1, ONE, PT1, R, R0, SRUR, THOU, &
^^^
./dvode.f:2270:49: warning: Value of uninitialized local variable 'pt1' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION CON, DI, FAC, HRL1, ONE, PT1, R, R0, SRUR, THOU, &
^^^
./dvode.f:2270:67: warning: Value of uninitialized local variable 'thou' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION CON, DI, FAC, HRL1, ONE, PT1, R, R0, SRUR, THOU, &
^^^^
./dvode.f:2271:25: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
& YI, YJ, YJJ, ZERO
^^^^
./dvode.f:2551:34: warning: Value of uninitialized local variable 'one' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION DI, HRL1, ONE, PHRL1, R, ZERO
^^^
./dvode.f:2551:49: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION DI, HRL1, ONE, PHRL1, R, ZERO
^^^^
flang-22 -fpic -O2 -pedantic -c errmsg.f -o errmsg.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c ex_Aquaphy.c -o ex_Aquaphy.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c ex_CCL4model.c -o ex_CCL4model.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c ex_ChemicalDAE.c -o ex_ChemicalDAE.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c ex_SCOC.c -o ex_SCOC.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c forcings.c -o forcings.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c lags.c -o lags.o
flang-22 -fpic -O2 -pedantic -c opkda1.f -o opkda1.o
./opkda1.f:2979:12: warning: Value of uninitialized local variable 'lratio' is used but never defined [-Wused-undefined-variable]
data lratio/2/
^^^^^^
./opkda1.f:3960:49: warning: Value of uninitialized local variable 'sm1' is used but never defined [-Wused-undefined-variable]
1 PDH, PNORM, RATE, RH1, RH1IT, RH2, RM, SM1(12)
^^^
./opkda1.f:5137:52: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION T2, TMAX, FRACINT, FRACSUB, ZERO,HALF,TENTH,FIVE
^^^^
./opkda1.f:5137:57: warning: Value of uninitialized local variable 'half' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION T2, TMAX, FRACINT, FRACSUB, ZERO,HALF,TENTH,FIVE
^^^^
./opkda1.f:5137:62: warning: Value of uninitialized local variable 'tenth' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION T2, TMAX, FRACINT, FRACSUB, ZERO,HALF,TENTH,FIVE
^^^^^
./opkda1.f:5137:68: warning: Value of uninitialized local variable 'five' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION T2, TMAX, FRACINT, FRACSUB, ZERO,HALF,TENTH,FIVE
^^^^
./opkda1.f:7742:43: warning: Value of uninitialized local variable 'half' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION AFI, ATOLI, DELYI, HALF, HG, HLB, HNEW, HRAT,
^^^^
./opkda1.f:7743:17: warning: Value of uninitialized local variable 'hun' is used but never defined [-Wused-undefined-variable]
1 HUB, HUN, PT1, T1, TDIST, TROUND, TWO, DVNORM, YDDNRM
^^^
./opkda1.f:7743:22: warning: Value of uninitialized local variable 'pt1' is used but never defined [-Wused-undefined-variable]
1 HUB, HUN, PT1, T1, TDIST, TROUND, TWO, DVNORM, YDDNRM
^^^
./opkda1.f:7743:46: warning: Value of uninitialized local variable 'two' is used but never defined [-Wused-undefined-variable]
1 HUB, HUN, PT1, T1, TDIST, TROUND, TWO, DVNORM, YDDNRM
^^^
flang-22 -fpic -O2 -pedantic -c opkdmain.f -o opkdmain.o
./opkdmain.f:1235:35: warning: Value of uninitialized local variable 'mord' is used but never defined [-Wused-undefined-variable]
1 LENIW, LENRW, LENWM, ML, MORD, MU, MXHNL0, MXSTP0
^^^^
./opkdmain.f:1235:45: warning: Value of uninitialized local variable 'mxhnl0' is used but never defined [-Wused-undefined-variable]
1 LENIW, LENRW, LENWM, ML, MORD, MU, MXHNL0, MXSTP0
^^^^^^
./opkdmain.f:1235:53: warning: Value of uninitialized local variable 'mxstp0' is used but never defined [-Wused-undefined-variable]
1 LENIW, LENRW, LENWM, ML, MORD, MU, MXHNL0, MXSTP0
^^^^^^
./opkdmain.f:3088:18: warning: Value of uninitialized local variable 'lenrat' is used but never defined [-Wused-undefined-variable]
1 J, KGO, LENRAT, LENYHT, LENIW, LENRW, LF0, LIA, LJA,
^^^^^^
./opkdmain.f:3089:41: warning: Value of uninitialized local variable 'mord' is used but never defined [-Wused-undefined-variable]
2 LRTEM, LWTEM, LYHD, LYHN, MF1, MORD, MXHNL0, MXSTP0, NCOLM
^^^^
./opkdmain.f:3089:47: warning: Value of uninitialized local variable 'mxhnl0' is used but never defined [-Wused-undefined-variable]
2 LRTEM, LWTEM, LYHD, LYHN, MF1, MORD, MXHNL0, MXSTP0, NCOLM
^^^^^^
./opkdmain.f:3089:55: warning: Value of uninitialized local variable 'mxstp0' is used but never defined [-Wused-undefined-variable]
2 LRTEM, LWTEM, LYHD, LYHN, MF1, MORD, MXHNL0, MXSTP0, NCOLM
^^^^^^
./opkdmain.f:4888:35: warning: Value of uninitialized local variable 'mord' is used but never defined [-Wused-undefined-variable]
1 LENIW, LENRW, LENWM, ML, MORD, MU, MXHNL0, MXSTP0
^^^^
./opkdmain.f:4888:45: warning: Value of uninitialized local variable 'mxhnl0' is used but never defined [-Wused-undefined-variable]
1 LENIW, LENRW, LENWM, ML, MORD, MU, MXHNL0, MXSTP0
^^^^^^
./opkdmain.f:4888:53: warning: Value of uninitialized local variable 'mxstp0' is used but never defined [-Wused-undefined-variable]
1 LENIW, LENRW, LENWM, ML, MORD, MU, MXHNL0, MXSTP0
^^^^^^
./opkdmain.f:6704:33: warning: Value of uninitialized local variable 'mord' is used but never defined [-Wused-undefined-variable]
1 LENRW, LENWM, LF0, ML, MORD, MU, MXHNL0, MXSTP0
^^^^
./opkdmain.f:6704:43: warning: Value of uninitialized local variable 'mxhnl0' is used but never defined [-Wused-undefined-variable]
1 LENRW, LENWM, LF0, ML, MORD, MU, MXHNL0, MXSTP0
^^^^^^
./opkdmain.f:6704:51: warning: Value of uninitialized local variable 'mxstp0' is used but never defined [-Wused-undefined-variable]
1 LENRW, LENWM, LF0, ML, MORD, MU, MXHNL0, MXSTP0
^^^^^^
flang-22 -fpic -O2 -pedantic -c radau5.f -o radau5.o
flang-22 -fpic -O2 -pedantic -c radau5a.f -o radau5a.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rk_auto.c -o rk_auto.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rk_fixed.c -o rk_fixed.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rk_implicit.c -o rk_implicit.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rk_util.c -o rk_util.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rprintf.c -o rprintf.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c twoDmap.c -o twoDmap.o
flang-22 -fpic -O2 -pedantic -c zvode.f -o zvode.o
./zvode.f:1074:42: warning: Value of uninitialized local variable 'four' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION ATOLI, BIG, EWTI, FOUR, H0, HMAX, HMX, HUN, ONE,
^^^^
./zvode.f:1074:63: warning: Value of uninitialized local variable 'hun' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION ATOLI, BIG, EWTI, FOUR, H0, HMAX, HMX, HUN, ONE,
^^^
./zvode.f:1074:68: warning: Value of uninitialized local variable 'one' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION ATOLI, BIG, EWTI, FOUR, H0, HMAX, HMX, HUN, ONE,
^^^
./zvode.f:1075:10: warning: Value of uninitialized local variable 'pt2' is used but never defined [-Wused-undefined-variable]
1 PT2, RH, RTOLI, SIZE, TCRIT, TNEXT, TOLSF, TP, TWO, ZERO
^^^
./zvode.f:1075:57: warning: Value of uninitialized local variable 'two' is used but never defined [-Wused-undefined-variable]
1 PT2, RH, RTOLI, SIZE, TCRIT, TNEXT, TOLSF, TP, TWO, ZERO
^^^
./zvode.f:1077:45: warning: Value of uninitialized local variable 'mord' is used but never defined [-Wused-undefined-variable]
1 LENRW, LENWM, LF0, MBAND, MFA, ML, MORD, MU, MXHNL0, MXSTP0,
^^^^
./zvode.f:1077:55: warning: Value of uninitialized local variable 'mxhnl0' is used but never defined [-Wused-undefined-variable]
1 LENRW, LENWM, LF0, MBAND, MFA, ML, MORD, MU, MXHNL0, MXSTP0,
^^^^^^
./zvode.f:1077:63: warning: Value of uninitialized local variable 'mxstp0' is used but never defined [-Wused-undefined-variable]
1 LENRW, LENWM, LF0, MBAND, MFA, ML, MORD, MU, MXHNL0, MXSTP0,
^^^^^^
./zvode.f:1793:46: warning: Value of uninitialized local variable 'half' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION AFI, ATOLI, DELYI, H, HALF, HG, HLB, HNEW, HRAT,
^^^^
./zvode.f:1794:17: warning: Value of uninitialized local variable 'hun' is used but never defined [-Wused-undefined-variable]
1 HUB, HUN, PT1, T1, TDIST, TROUND, TWO, YDDNRM
^^^
./zvode.f:1794:22: warning: Value of uninitialized local variable 'pt1' is used but never defined [-Wused-undefined-variable]
1 HUB, HUN, PT1, T1, TDIST, TROUND, TWO, YDDNRM
^^^
./zvode.f:1794:46: warning: Value of uninitialized local variable 'two' is used but never defined [-Wused-undefined-variable]
1 HUB, HUN, PT1, T1, TDIST, TROUND, TWO, YDDNRM
^^^
./zvode.f:1939:27: warning: Value of uninitialized local variable 'hun' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION C, HUN, R, S, TFUZZ, TN1, TP, ZERO
^^^
./zvode.f:2096:24: warning: Value of uninitialized local variable 'addon' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION ADDON, BIAS1,BIAS2,BIAS3, CNQUOT, DDN, DSM, DUP,
^^^^^
./zvode.f:2096:31: warning: Value of uninitialized local variable 'bias1' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION ADDON, BIAS1,BIAS2,BIAS3, CNQUOT, DDN, DSM, DUP,
^^^^^
./zvode.f:2096:37: warning: Value of uninitialized local variable 'bias2' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION ADDON, BIAS1,BIAS2,BIAS3, CNQUOT, DDN, DSM, DUP,
^^^^^
./zvode.f:2096:43: warning: Value of uninitialized local variable 'bias3' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION ADDON, BIAS1,BIAS2,BIAS3, CNQUOT, DDN, DSM, DUP,
^^^^^
./zvode.f:2097:12: warning: Value of uninitialized local variable 'etacf' is used but never defined [-Wused-undefined-variable]
1 ETACF, ETAMIN, ETAMX1, ETAMX2, ETAMX3, ETAMXF,
^^^^^
./zvode.f:2097:19: warning: Value of uninitialized local variable 'etamin' is used but never defined [-Wused-undefined-variable]
1 ETACF, ETAMIN, ETAMX1, ETAMX2, ETAMX3, ETAMXF,
^^^^^^
./zvode.f:2097:27: warning: Value of uninitialized local variable 'etamx1' is used but never defined [-Wused-undefined-variable]
1 ETACF, ETAMIN, ETAMX1, ETAMX2, ETAMX3, ETAMXF,
^^^^^^
./zvode.f:2097:35: warning: Value of uninitialized local variable 'etamx2' is used but never defined [-Wused-undefined-variable]
1 ETACF, ETAMIN, ETAMX1, ETAMX2, ETAMX3, ETAMXF,
^^^^^^
./zvode.f:2097:43: warning: Value of uninitialized local variable 'etamx3' is used but never defined [-Wused-undefined-variable]
1 ETACF, ETAMIN, ETAMX1, ETAMX2, ETAMX3, ETAMXF,
^^^^^^
./zvode.f:2097:51: warning: Value of uninitialized local variable 'etamxf' is used but never defined [-Wused-undefined-variable]
1 ETACF, ETAMIN, ETAMX1, ETAMX2, ETAMX3, ETAMXF,
^^^^^^
./zvode.f:2098:41: warning: Value of uninitialized local variable 'one' is used but never defined [-Wused-undefined-variable]
2 ETAQ, ETAQM1, ETAQP1, FLOTL, ONE, ONEPSM,
^^^
./zvode.f:2098:46: warning: Value of uninitialized local variable 'onepsm' is used but never defined [-Wused-undefined-variable]
2 ETAQ, ETAQM1, ETAQP1, FLOTL, ONE, ONEPSM,
^^^^^^
./zvode.f:2099:15: warning: Value of uninitialized local variable 'thresh' is used but never defined [-Wused-undefined-variable]
3 R, THRESH, TOLD, ZERO
^^^^^^
./zvode.f:2099:29: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
3 R, THRESH, TOLD, ZERO
^^^^
./zvode.f:2100:40: warning: Value of uninitialized local variable 'kfc' is used but never defined [-Wused-undefined-variable]
INTEGER I, I1, I2, IBACK, J, JB, KFC, KFH, MXNCF, NCF, NFLAG
^^^
./zvode.f:2100:45: warning: Value of uninitialized local variable 'kfh' is used but never defined [-Wused-undefined-variable]
INTEGER I, I1, I2, IBACK, J, JB, KFC, KFH, MXNCF, NCF, NFLAG
^^^
./zvode.f:2100:50: warning: Value of uninitialized local variable 'mxncf' is used but never defined [-Wused-undefined-variable]
INTEGER I, I1, I2, IBACK, J, JB, KFC, KFH, MXNCF, NCF, NFLAG
^^^^^
./zvode.f:2515:46: warning: Value of uninitialized local variable 'cortes' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION AHATN0, ALPH0, CNQM1, CORTES, CSUM, ELP, EM,
^^^^^^
./zvode.f:2516:45: warning: Value of uninitialized local variable 'one' is used but never defined [-Wused-undefined-variable]
1 EM0, FLOTI, FLOTL, FLOTNQ, HSUM, ONE, RXI, RXIS, S, SIX,
^^^
./zvode.f:2516:64: warning: Value of uninitialized local variable 'six' is used but never defined [-Wused-undefined-variable]
1 EM0, FLOTI, FLOTL, FLOTNQ, HSUM, ONE, RXI, RXIS, S, SIX,
^^^
./zvode.f:2517:36: warning: Value of uninitialized local variable 'two' is used but never defined [-Wused-undefined-variable]
2 T1, T2, T3, T4, T5, T6, TWO, XI, ZERO
^^^
./zvode.f:2517:45: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
2 T1, T2, T3, T4, T5, T6, TWO, XI, ZERO
^^^^
./zvode.f:2706:44: warning: Value of uninitialized local variable 'one' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION ALPH0, ALPH1, HSUM, ONE, PROD, T1, XI,XIOLD, ZERO
^^^
./zvode.f:2706:69: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION ALPH0, ALPH1, HSUM, ONE, PROD, T1, XI,XIOLD, ZERO
^^^^
./zvode.f:2929:24: warning: Value of uninitialized local variable 'ccmax' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION CCMAX, CRDOWN, CSCALE, DCON, DEL, DELP, ONE,
^^^^^
./zvode.f:2929:31: warning: Value of uninitialized local variable 'crdown' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION CCMAX, CRDOWN, CSCALE, DCON, DEL, DELP, ONE,
^^^^^^
./zvode.f:2930:12: warning: Value of uninitialized local variable 'rdiv' is used but never defined [-Wused-undefined-variable]
1 RDIV, TWO, ZERO
^^^^
./zvode.f:2930:18: warning: Value of uninitialized local variable 'two' is used but never defined [-Wused-undefined-variable]
1 RDIV, TWO, ZERO
^^^
./zvode.f:2930:23: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
1 RDIV, TWO, ZERO
^^^^
./zvode.f:2931:35: warning: Value of uninitialized local variable 'maxcor' is used but never defined [-Wused-undefined-variable]
INTEGER I, IERPJ, IERSL, M, MAXCOR, MSBP
^^^^^^
./zvode.f:2931:43: warning: Value of uninitialized local variable 'msbp' is used but never defined [-Wused-undefined-variable]
INTEGER I, IERPJ, IERSL, M, MAXCOR, MSBP
^^^^
./zvode.f:3161:34: warning: Value of uninitialized local variable 'one' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION CON, FAC, ONE, PT1, R, R0, THOU, ZERO
^^^
./zvode.f:3161:39: warning: Value of uninitialized local variable 'pt1' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION CON, FAC, ONE, PT1, R, R0, THOU, ZERO
^^^
./zvode.f:3161:51: warning: Value of uninitialized local variable 'thou' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION CON, FAC, ONE, PT1, R, R0, THOU, ZERO
^^^^
./zvode.f:3161:57: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION CON, FAC, ONE, PT1, R, R0, THOU, ZERO
^^^^
./zvode.f:3432:24: warning: Value of uninitialized local variable 'one' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION ONE, PHRL1, R, ZERO
^^^
./zvode.f:3432:39: warning: Value of uninitialized local variable 'zero' is used but never defined [-Wused-undefined-variable]
DOUBLE PRECISION ONE, PHRL1, R, ZERO
^^^^
./zvode.f:3512:18: warning: Value of uninitialized local variable 'leniv1' is used but never defined [-Wused-undefined-variable]
INTEGER I, LENIV1, LENIV2, LENRV1, LENRV2
^^^^^^
./zvode.f:3512:26: warning: Value of uninitialized local variable 'leniv2' is used but never defined [-Wused-undefined-variable]
INTEGER I, LENIV1, LENIV2, LENRV1, LENRV2
^^^^^^
./zvode.f:3512:34: warning: Value of uninitialized local variable 'lenrv1' is used but never defined [-Wused-undefined-variable]
INTEGER I, LENIV1, LENIV2, LENRV1, LENRV2
^^^^^^
./zvode.f:3512:42: warning: Value of uninitialized local variable 'lenrv2' is used but never defined [-Wused-undefined-variable]
INTEGER I, LENIV1, LENIV2, LENRV1, LENRV2
^^^^^^
clang-22 -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/22/lib/x86_64-unknown-linux-gnu -o deSolve.so DLLutil.o R_init_deSolve.o brent.o call_daspk.o call_euler.o call_iteration.o call_lsoda.o call_radau.o call_rk4.o call_rkAuto.o call_rkFixed.o call_rkImplicit.o call_zvode.o daux.o ddaspk.o deSolve_utils.o dintdy2.o dlinpk.o dlsoder.o dsparsk.o dvode.o errmsg.o ex_Aquaphy.o ex_CCL4model.o ex_ChemicalDAE.o ex_SCOC.o forcings.o lags.o opkda1.o opkdmain.o radau5.o radau5a.o rk_auto.o rk_fixed.o rk_implicit.o rk_util.o rprintf.o twoDmap.o zvode.o -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/deSolve/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/deSolve/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/deSolve/src'
installing to /data/gannet/ripley/R/packages/tests-clang/deSolve.Rcheck/00LOCK-deSolve/00new/deSolve/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘matplot’ in package ‘deSolve’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (deSolve)